Evolutionary histories of highly repeated DNA families among the Artiodactyla (mammalia)

Journal of Molecular Evolution

Volumn 42, Issue 3, 1996, Pages 337-349

  Modi, William S ^a   Gallagher, Daniel S ^b   Womack, James E ^b  

^a SAIC FREDERICK INC   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Artiodactyla; Evolutionary history; Mammalia

Indexed keywords

REPETITIVE DNA;

ARTICLE; ARTIODACTYLA; BOVIDS; BUFFALO; CENTROMERE; CONTROLLED STUDY; DNA SEQUENCE; EVOLUTION; KARYOTYPE; MULTIGENE FAMILY; NONHUMAN; TELOMERE;

EID: 0029969579     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02337544     Document Type: Article

References (49)

1. Allard MW, Miyamoto MM, Jarecki L, Kraus F. Tennant MR (1992) DNA systematics and evolution of the artiodactyl family Bovidae. Proc Natl Acad Sci USA 89:3972-3976
2. Benirschke K, Ruedi D, Muller H, Kumamoto AT, Wagner KL, Downes HS (1980) Karyotype of the lesser kudu, Tragelaphus imberbis. Cytogenet Cell Genet 26:85-92
3. Bogenberger JM, Neitzel H, Fittler F (1987) A highly repetitive DNA component common to all Cervidae: its organization and chromosomal distribution during evolution. Chromosoma 95:154-161
4. Bogenberger JM, Neumaier PS, Fittler F (1985) Characterization of X-chromosome specific satellite DNA of Muntiacus muntjak vaginalis. Chromosoma 87:9-20
5. Buckland RA, Evans HJ (1978a) Cytogenetic aspects of phylogeny in the Bovidae 1. G-banding. Cytogenet Cell Genet 21:42-63
6. Buckland RA, Evans HJ (1978b) Cytogenetic aspects of phylogeny in the Bovidae II. C-banding. Cytogenet Cell Genet 21:64-71
7. Deininger PL, Batzer MA (1993) Evolution of retroposons. In: Hecht MK et al. (eds) Plenum Press. NYC 27:157-196
8. Duncan CH (1987) Novel Alu-type repeat in artiodactyls. Nucleic Acids Res 15:1340
9. Effron M, Bogart MH, Kumamoto AT, Benirschke K (1976) Chromosome studies in the mammalian subfamily Antilopinae. Genetica 46:419-444
10. Gaillard C, Doly J, Cortadas J. Bernardi G (1981) The primary structure of bovine satellite 1.715. Nucleic Acids Res 10:6069-6082
11. Gallagher DS Jr, Derr JN, Womack JE (1994) Chromosome conservation among the advanced pecorans and determination of the primitive bovid karyotype. J Hered 85:204-210
12. Gallagher DS, Womack JE (1992) Chromosome conservation in the Bovidae. J Hered 82:287-298
13. Gatesy J, Yelon D, DeSalle R, Vrba ES (1992) Phylogeny of the Bovidae (Artiodactyla. Mammalia) based on mitochondrial ribosomal DNA sequences. Mol Biol Evol 9:433-446
14. Gentry AW (1978) Bovidae. In: Maglioi VJ, Cooke HBS (eds) Evolution of African mammals. Harvard University Press, Cambridge, MA pp 540-572
15. Gentry AW (1992) The subfamilies and tribes of the family Bovidae. Mammal Rev 22:1-320
16. Georgiadis NJ, Kat PW, Oketch H (1990) Allozyme divergence within the Bovidae. Evolution 44:2135-2149
17. Groves CP (1981) Systematic relationships in the Bovini (Artiodactyla, Bovidae). Zeitschrift für Zoologische Systematik und Evolutionsforschung
18. Grubb P (1972) Variation and incipient speciation in the African buffalo. Z. Säugetierkunde 37:121-144
19. Hansen KM (1973) Heterochromatin (C-bands) in bovine chromosomes. Hereditas 73:65-70
20. Iannuzzi L, Di Berardino D, Gustavsson I, Ferrara L, Di Meo GP (1987) Centromeric loss in translocations of centric fusion type in cattle and river buffalo. Hereditas 106:73-81
21. Janis CM, Scott KM (1987) The interrelationships of higher ruminant families with special emphasis on the members of the Cervoidea. Novitates 2893:1-85
22. Jobse C, Buntjer JB, Haagsma N, Breukelman HJ, Beintma JJ, Lenstra JA Evolution and recombination of bovine DNA repeats. J Mol Evol (in press)
23. Kido Y, Aono M, Yamaki T, Matsumoto K, Murata S, Saneyoshi M, Okada N (1991) Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc Natl Acad Sci USA 88:2326
24. Korenberg JR, Rykowski MC (1988) Human genome organization Alu, LINES, and the molecular structure of metaphase chromosome bands. Cell 53:391-400
25. Koishi R, Okada N (1991) Distribution of the salmonid Hpa I family in the salmonid species demonstrated by in vitro runoff transcription assay of total genomic DNA. A procedure to estimate repetitive frequency and sequence divergence of a certain repetitive family with a few known sequences. J Mol Evol 32:43
26. Lenstra JA, van Boxtel JAF, Zwaagstra KA, Schwerin M (1993) SINE sequence of domestic artiodactyls. Anim Genet 24:33-40
27. Macaya G, Cortadas J, Bernardi G (1978) An analysis of the bovine genome density-gradient centrifugation: preparation of the dG+dC-rich DNA components. Eur J Biochem 84:179-188
28. Majewska K, Szemraj J, Plucienniczak G, Jaworski J, Plucienniczak A (1988) A new family of dispersed, highly repetitive sequences in bovine genome. Biochim Biophys Acta 949:119-124
29. Meyne J, Baker RJ, Hobart HH, Hsu TC, Ryder OA, Ward OG, Wiley JE, Wurster-Hill DH, Yates TL, Moyzis RK (1990) Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma 99:3-10
30. Miyamoto MM, Tanhauser SM, Laipis PJ (1989) Systematic relationships in the artiodactyl tribe (family Bovidae), as determined from mitochondrial DNA sequences. Syst Zool 38:342-349
31. Modi WS (1993) Heterogeneity in the concerted evolution process of a tandem satellite array in meadow mice (Microtus). J Mol Evol 37:48-56
32. Modi WS, Gallagher DS, Womack JE (1993) Molecular organization and chromosomal localization of six highly repeated DNA families in the bovine genome. Anim Biotechnol 4:143-161
33. Moyzis RK, Buckinghamn JM, Cram LS, Dani M, Deaven LL, Jones MD, Meyne J, Ratliff RL, Wu JR (1988) A highly conserved repetitive DNA sequence, (TTAGG)n, present at the telomeres of human chromosomes. Proc Natl Acad Sci USA 85:662-666
34. Niebuhr E (1972) Dicentric and monocentric Robertsonian Translocations in man. Humangenetik 16:217-226
35. Pech M, Streeck RE, Zachau HG (1979) Patchwork structure of a bovine satellite DNA. Cell 18:883-893
36. Plucienniczak A, Skowronski J, Jaworski J (1982) Nucleotide sequence of bovine 1.715 satellite DNA and its relation to other bovine satellite sequences. J Mol Biol 158:293-304
37. Poschl E, Streeck RE (1980) Prototype sequence of bovine 1.720 satellite DNA. J Mol Biol 143:147-153
38. Reading Conference (1980) Proceedings of the first international conference for the standardization of banded karyotypes of domestic animals. Hereditas 92:145-162
39. Simpson GG (1945) The principles of classification and a classification of mammals. Bull Am Mus Nat Hist 85:1-350
40. Skowronski J, Plucienniczak A, Bednarek A, Jaworski J (1984) Bovine 1.709 satellite recombination hotspots and dispersed repeated sequences. J Mol Biol 177:399-416
41. Streeck RE (1981) Inserted sequences in bovine satellite DNA's. Science 213:443-445
42. Streeck RE (1982) A multicopy insertion sequence in the bovine genome with structural homology to the long terminal repeats of retroviruses. Nature 298:767-769
43. 3). Nucleic Acids Res 10:1271-1281
44. Van Gelder R (1977) Mammalian hybrids and generic limits. Am Mus Noviates 2635:1-25
45. Vrba ES (1985) African Bovidae Evolutionary events since the Miocene. S Afr J Sci 81:263-266
46. Wall AD, Davis SK, Read BM (1992) Phylogenetic relationships in the subfamily bovinae (Mammalia-Artiodactyla) based on ribosomal DNA. J Mamm 73:262-275
47. Watanabe Y, Tsukuda T, Notake M, Nakanishi S. Numa S (1982) Structural analysis of repetitive DNA sequences in the bovine corticotropin-β-lipotropin precursor gene region. Nucleic Acids Res 10:1459-1469
48. Webb SD, Taylor BE (1980) The phylogeny of hornless ruminants and a description of the cranium of Archaeomeryx. Bull Am Mus Nat Hist 167:117-158
49. Wurster DH, Benirschke K (1968) Chromosome studies in the superfamily Bovidae. Chromosoma 25:152-171