Development of microsphere-based multiplex branched DNA assay for detection and differentiation of avian influenza virus strains

Journal of Clinical Microbiology

Volumn 48, Issue 7, 2010, Pages 2575-2577

  Cha, Wonhee ^a,b,d   Ma, Yunqing ^c   Saif, Yehia Mo ^a,b   Lee, Chang Won ^a,b  

^a OHIO STATE UNIVERSITY   (United States)

^b THE OHIO STATE UNIVERSITY COLLEGE OF MEDICINE   (United States)

^c Thermo Fisher Scientific   (United States)

^d Department of Molecular Biology and Genetics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS HEMAGGLUTININ; ALLANTOIC ACID; INFLUENZA VIRUS HEMAGGLUTININ; MICROSPHERE; UREA; VIRUS RNA;

ARTICLE; AVIAN INFLUENZA; DNA DETERMINATION; GENETIC VARIABILITY; MICROSPHERE BASED MULTIPLEX BRANCHED DNA ASSAY; NONHUMAN; PRIORITY JOURNAL; STRAIN DIFFERENCE; VIRUS DETECTION; VIRUS STRAIN; VIRUS TYPING; ANALOGS AND DERIVATIVES; ANIMAL; BRANCHED DNA SIGNAL AMPLIFICATION ASSAY; CHICKEN; CLASSIFICATION; EGG; GENETICS; INFLUENZA VIRUS A; ISOLATION AND PURIFICATION; PROCEDURES; SENSITIVITY AND SPECIFICITY; VIRUS CULTURE;

AVIAN INFLUENZA VIRUS;

ANIMALS; BRANCHED DNA SIGNAL AMPLIFICATION ASSAY; CHICKENS; EGGS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS; MICROSPHERES; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; UREA; VIRUS CULTIVATION;

EID: 77954450042     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01979-09     Document Type: Article

References (16)

1. Bushnell, S., J. Budde, T. Catino, J. Cole, A. Derti, R. Kelso, M. L. Collins, G. Molino, P. Sheridan, J. Monahan, and M. Urdea. 1999. ProbeDesigner: for the design of probe sets for branched DNA (bDNA) signal amplification assays. Bioinformatics 15:348-355.
2. Chua, T. H., T. M. Ellis, C. W. Wong, Y. Guan, S. X. Ge, G. Peng, C. Lamichhane, C. Maliadis, S. W. Tan, P. Selleck, and J. Parkinson. 2007. Performance evaluation of five detection tests for avian influenza antigen with various avian samples. Avian Dis. 51:96-105.
3. Collins, M. L., B. Irvine, D. Tyner, E. Fine, C. Zayati, C. Chang, T. Horn, D. Ahle, J. Detmer, L. Shen, J. Kolberg, S. Bushnell, M. S. Urdea, and D. D. Ho. 1997. A branched DNA signal amplification assay for quantification of nucleic acid targets below 100 molecules/ml. Nucleic Acids Res. 25:2979-2984.
4. Elvinger, F., B. L. Akey, D. A. Senne, F. W. Pierson, B. A. Porter-Spalding, E. Spackman, and D. L. Suarez. 2007. Characteristics of diagnostic tests used in the 2002 low-pathogenicity avian influenza H7N2 outbreak in Virginia. J. Vet. Diagn. Invest. 19:341-348.
5. Flagella, M., S. Bui, Z. Zheng, C. T. Nguyen, A. Zhang, L. Poster, Y. Ma, W. Yang, K. L. Crawford, G. K. McMaster, F. Witney, and Y. Luo. 2006. A multiplex branched DNA assay for parallel quantitative gene expression profiling. Anal. Biochem. 352:50-60.
6. Lau, J. Y. N., G. L. Davis, J. Kniffen, K. P. Qian, M. S. Urdea, C. S. Chan, P. D. Neuwald, J. C. Wilber, and M. Mizokami. 1993. Significance of serum hepatitis C virus RNA levels in chronic hepatitis C. Lancet 341:1501-1504.
7. Lee, C. W., and D. L. Suarez. 2004. Application of real-time RT-PCR for the quantitation and competitive replication study of H5 and H7 subtype avian influenza virus. J. Virol. Methods 119:151-158.
8. Shortridge, K. F. 1992. Pandemic influenza: a zoonosis? Semin. Respir. Infect. 7:11-25.
9. Spackman, E., D. A. Senne, T. J. Myers, L. L. Bulaga, L. P. Garber, M. L. Perdue, K. Lohman, L. T. Daum, and D. L. Suarez. 2002. Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J. Clin. Microbiol. 40:3256-3560.
10. Spackman, E., and D. L. Suarez. 2008. Type A influenza virus detection and quantitation by real-time RT-PCR, p. 19-26. In E. Spackman (ed.), Methods in molecular biology 436 avian influenza virus. Humana Press Inc., Totowa, NJ.
11. Urdea, M. S. 1993. Synthesis and characterization of branched DNA (bDNA) for the direct and quantitative detection of CMV, HBV, HCV, and HIV. Clin. Chem. 39:725-726.
12. Urdea, M. S. 1994. Branched DNA signal amplification. Nat. Biotechnol. 12:926-928.
13. Vignali, D. A. 2000. Multiplexed particle-based flow cytometric assays. J. Immunol. Methods 243:243-255.
14. World Organization for Animal Health. 2004. Avian influenza in manual of diagnostic tests and vaccines for terrestrial animals, chapter 2.7.12. World Organization for Animal Health, Paris, France.
15. Wright, P. F., G. Neumann, and Y. Kawaoka. 2007. Orthomyxoviruses, p. 1629-1740. In D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology. Wolters Kluwer Health/Lippincott Williams & Wilkins, Philadelphia, PA.
16. Zhang, A., L. Pastor, Q. Nguyen, Y. Luo, W. Yang, M. Flagella, R. Chavli, S. Bui, C. T. Nguyen, Z. Zheng, W. He, G. McMaster, and F. Witney. 2005. Small interfering RNA and gene expression analysis using a multiplex branched DNA assay without RNA purification. J. Biomol. Screen. 10:549-556.