Structure of Rv1848 (UreA), the Mycobacterium tuberculosis urease γ subunit

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 66, Issue 7, 2010, Pages 781-786

  Habel, Jeff E ^a   Bursey, Evan H ^a,d   Rho, Beom Seop ^b,e   Kim, Chang Yub ^b   Segelke, Brent W ^c   Rupp, Bernhard ^c,f   Park, Min S ^b   Terwilliger, Thomas C ^b   Hung, Li Wei ^a,b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

^c LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^d BIO RAD LABORATORIES   (United States)

^e Biotechnology Department   (South Korea)

^f qed Life Science Discoveries   (United States)

Author keywords

Mycobacterium tuberculosis; structural genomics; urease

Indexed keywords

PROTEIN SUBUNIT; UREASE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; MOLECULAR GENETICS; MYCOBACTERIUM TUBERCULOSIS; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; UREASE;

BACTERIA (MICROORGANISMS); KLEBSIELLA AEROGENES; MYCOBACTERIUM TUBERCULOSIS;

EID: 77954441529     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309110019536     Document Type: Article

References (36)

1. Bahadur, R. P., Chakrabarti, P., Rodier, F. & Janin, J. (2004). J. Mol. Biol. 336, 943-955.
2. Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. (2001). Proc. Natl Acad. Sci. USA, 98, 10037-10041.
3. Benini, S., Rypniewski,W. R.,Wilson, K. S.,Miletti, S., Ciurli, S. &Mangani, S. (1999). Structure, 7, 205-216.
4. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
5. Clemens, D. L., Lee, B. Y. & Horwitz, M. A. (1995). J. Bacteriol. 177, 5644-5652.
6. Corpet, F. (1988). Nucleic Acids Res. 16, 10881-10890.
7. Cox, G. M., Mukherjee, J., Cole, G. T., Casadevall, A. & Perfect, J. R. (2000). Infect. Immun. 68, 443-448.
8. DeLano, W. L. (2002). The PYMOL Molecular Viewer. http://www.pymol.org.
9. Dolinsky, T. J., Czodrowski, P., Li, H., Nielsen, J. E., Jensen, J. H., Klebe, G. & Baker, N. A. (2007). Nucleic Acids Res. 35, W522-W525.
10. Dolinsky, T. J., Nielsen, J. E., McCammon, J. A. & Baker, N. A. (2004). Nucleic Acids Res. 32, W665-W667.
11. Eaton, K. A., Brooks, C. L., Morgan, D. R. & Krakowka, S. (1991). Infect. Immun. 59, 2470-2475.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Evans, P. (2006). Acta Cryst. D62, 72-82.
14. Gordon, A. H., Hart, P. D. & Young, M. R. (1980). Nature (London), 286, 79-80.
15. Ha, N.-C., Oh, S.-T., Sung, J. Y., Cha, K. A., Lee, M. H. & Oh, B.-H. (2001). Nature Struct. Biol. 8, 505-509.
16. Jabri, E., Carr, M. B., Hausinger, R. P. & Karplus, P. A. (1995). Science, 268, 998-1004.
17. Jones, B. D., Lockatell, C. V., Johnson, D. E., Warren, J. W. & Mobley, H. L. (1990). Infect. Immun. 58, 1120-1123.
18. Jones, B. D. & Mobley, H. L. (1989). J. Bacteriol. 171, 6414-6422.
19. Konarev, P. V., Volkov, V. V., Sokolova, A. V., Koch, M. H. J. & Svergun, D. I. (2003). J. Appl. Cryst. 36, 1277-1282.
20. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
21. Mobley, H. L. & Hausinger, R. P. (1989). Microbiol. Rev. 53, 85-108.
22. Mobley, H. L., Island, M. D. & Hausinger, R. P. (1995). Microbiol. Rev. 59, 451-480.
23. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
24. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
25. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C. & Ferrin, T. E. (2004). J. Comput. Chem. 25, 1605-1612.
26. Ponstingl, H., Henrick, K. & Thornton, J. M. (2000). Proteins, 41, 47-57.
27. Quiroz-Valenzuela, S., Sukuru, S. C., Hausinger, R. P., Kuhn, L. A. & Heller, W. T. (2008). Arch. Biochem. Biophys. 480, 51-57.
28. Svergun, D. I. (1992). J. Appl. Cryst. 25, 495-503.
29. Svergun, D. I., Petoukhov, M. V. & Koch, M. H. (2001). Biophys. J. 80, 2946-2953.
30. Takishima, K., Suga, T. & Mamiya, G. (1988). Eur. J. Biochem. 175, 151-165.
31. Tina, K. G., Bhadra, R. & Srinivasan, N. (2007). Nucleic Acids. Res. 35, W473-W476.
32. Todd, M. J. & Hausinger, R. P. (1987). J. Biol. Chem. 262, 5963-5967.
33. Tsuda, M., Karita, M., Morshed, M. G., Okita, K. & Nakazawa, T. (1994). Infect. Immun. 62, 3586-3589.
34. Volkov, V. V. & Svergun, D. I. (2003). J. Appl. Cryst. 36, 860-864.
35. Weiss, M. S. (2001). J. Appl. Cryst. 34, 130-135.
36. World Health Organization (2009). Global Tuberculosis Control - Epidemiology, Strategy, Financing. WHO/HTM/TB/2009.411. Geneva: World Health Organization.