The origin and dissemination of the cultivated almond as determined by nuclear and chloroplast SSR marker analysis

Scientia Horticulturae

Volumn 125, Issue 4, 2010, Pages 593-601

  Zeinalabedini, M ^a   Khayam Nekoui, M ^a   Grigorian, V ^b   Gradziel, T M ^c   Martinez Gomez P ^d  

^a AGRICULTURAL BIOTECHNOLOGY RESEARCH INSTITUTE OF IRAN ABRII   (Iran)

^b UNIVERSITY OF TABRIZ   (Iran)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d RESEARCH GROUP ON QUALITY   (Spain)

Author keywords

Breeding; Chloroplast DNA; Domestication; Gene flow; Genetic diversity; Interspecific hybridization; Microsatellites; Molecular markers; Nuclear DNA; Prunus dulcis; SSR

Indexed keywords

CHLOROPLAST; CULTIVAR; DECIDUOUS TREE; DOMESTICATION; GENE FLOW; GENETIC MARKER; GENETIC VARIATION; HYBRIDIZATION; INTERSPECIFIC INTERACTION; MOLECULAR ANALYSIS;

ASIA; MEDITERRANEAN SEA; MEDITERRANEAN SEA (EAST); MEDITERRANEAN SEA (WEST);

PRUNUS; PRUNUS DULCIS; PRUNUS FENZLIANA;

EID: 77954386031     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2010.05.007     Document Type: Article

References (61)

1. Aranzana M.J., García-Mas J., Carbó J., Arús P. Development and variability analysis of microsatellite markers in peach. Plant Breed. 2002, 121:87-92.
2. Aranzana M.J., Cosson P., Dirlewanger E., Ascasibar J., Cipriani G., Arús P., Testolin R., Abbott A., King G.J., Iezzoni A.F. A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor. Appl. Genet. 2003, 106:819-825.
3. Badenes M.L., Parfitt D.E. Phylogenetic relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. Theor. Appl. Genet. 1995, 90:1035-1041.
4. Bouhadida M., Martin J.P., Eremin G., Pinochet J., Moreno M.A., Gorgocena Y. Chloroplast DNA diversity in Prunus and its implication on genetic relationships. J. Am. Soc. Hort. Sci. 2007, 132:670-679.
5. Browicz K., Zohary D. The genus Amygdalus L. (Rosaceae): species relationships, distribution and evolution under domestication. Gen. Res. Crop Evol. 1996, 43:229-247.
6. Cantini C., Iezzoni A.F., Lamboy W.F., Boritzki M., Struss D. DNA fingerprinting of tetraploid cherry germplasm using SSRs. J. Am. Soc. Hort. Sci. 2001, 126:205-209.
7. Cerdá D. Economía antigua de Mallorca. Historia de Mallorca, vol. I 1973, 417-448. Pasarius, Palma de Mallorca, Spain. J. Mascaró Pasarius (Ed.).
8. Cipriani G., Lot G., Huang H.G., Marrazzo M.T., Peterlunger E., Testolin R. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica (L) Basch): isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 1999, 99:65-72.
9. Decroocq V., Favé M.G., Hagen L., Bordenave L., Decroocq S. Development and transferability of apricot and grape EST markers across taxa. Theor. Appl. Genet. 2003, 106:912-922.
10. Denisov V.P. Almond genetic resources in the USSR and their use in production and breeding. Acta Hort. 1988, 224:299-306.
11. Dicenta F., Ortega E., Martínez-Gómez P. Use of recessive homozygous genotypes to assess the genetic control of kernel bitterness in almond. Euphytica 2007, 153:221-225.
12. Dirlewanger E., Crosson A., Tavaud P., Aranzana M.J., Poizat C., Zanetto A., Arús P., Laigret L. Development of microsatellite markers in peach and their use in genetic diversity analysis in peach and sweet cherry. Theor. Appl. Genet. 2002, 105:127-138.
13. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1989, 19:11-15.
14. Evreinoff V.A. Contribution a l'etude de l'amandier. Fruits et primeurs Afrique 1958, 28:99-104.
15. García J.E., Egea L., Egea J., Berenguer T. Etude et selection de varieties d'amandier dans le sud-est de l'Espagne. 7 Coll GREMPA groupe de recherche et d'etude mediterraneen pour le pistachiere l'amandier 1988, 33-46. CIHEAM, Luxembourg. C. Grasselly (Ed.).
16. Gerald S., Dangl J.Y., Golino D.A., Gradizel T.M. A practical method for almond cultivar identification and parental analysis SSR markers. Euphytica 2009, 168:41-48.
17. Godini A. Contributo alla conoscenza delle cultivar di mandorlo (P. amygdalus Batsch) della puglia. 3rd Coll GREMPA 1977, 150-159.
18. Gradziel, T.M., in press. Origin and dissemination of almond. In: Janick, J. (Ed.), Horticultural Reviews, vol. 38.
19. Gradziel, T.M., Martínez-Gómez, P., in press. Almond. In: C.R. Kole, K. Woeste (Eds.), Orphan Crops of the World. Springer, Heidelberg, Berlin, New York, Tokyo.
20. Gradziel T.M., Martínez-Gómez P., Dicenta F., Kester D.E. The utilization of Prunus species for almond variety improvement. J. Am. Pomol. Soc. 2001, 55:100-108.
21. Grasselly C. Origine et évolution de l'amandier cultivé. Options Méditerr. 1976, 32:45-49.
22. Grasselly C. Les espèces sauvages de l'amandier cultivé. Options Méditerr. 1976, 32:28-43.
23. Gupta P.K., Balyan H.S., Sharma P.C., Ramesh B. Microsatellites in plants: a new class of molecular markers. Curr. Sci. 1996, 70:45-54.
24. Halasz J., Fodor A., Hegedus A., Pedryc A. Identification of a new self-incompatibility allele (S-31) in a Hungarian almond cultivar and its reliable detection. Sci. Hort. 2008, 116:448-451.
25. Jackson J.F., Clarke G.R. Gene flow in almond orchard. Theor. Appl. Genet. 1991, 82:169-173.
26. Kester D.E., Gradziel T.M., Grasselly C. Almonds (Prunus). Genetic Resources of Temperate Fruit and Nut Crops 1991, 701-758. International Society for Horticultural Science, The Netherlands. J.N. Moore, H.J. Ballington (Eds.).
27. Kester D.E., Gradziel T.M. Almonds (Prunus). Fruit Breeding 1996, 1-97. Wiley & Sons, New York, USA. J.N. Moore, J. Janick (Eds.).
28. Kloosterman A.D., Budowle B., Daselaar M. PCR-amplification and detection of the human DIS80 VNTR locus. Amplification conditions, population genetics and application in forensic analysis. Int. J. Legal Med. 1993, 105:257-264.
29. Katayama H., Uematsu C. Structural analysis of chloroplast NDA in Prunus (Rosaceae), evolution, genetic diversity and unequal mutations. Theor. Appl. Genet. 2005, 111:1430-1439.
30. Ladizinsky G. On the origin of almond. Gen. Res. Crop Evol. 1999, 46:143-147.
31. Martínez-Gómez P., Arulsekar S., Potter D., Gradziel T.M. An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers. Euphytica 2003, 131:313-322.
32. Martínez-Gómez P., Arulsekar S., Potter D., Gradziel T.M. Relationships among peach and almond and related species as detected by SSRs. J. Am. Soc. Hort. Sci. 2003, 128:667-671.
33. Martínez-Gómez P., Sánchez-Pérez R., Dicenta F., Howad W., Arus P., Gradziel T.M. Almonds. Fruits & Nuts 2007, vol. 4:229-242. Springer, Heidelberg, Berlin, New York, Tokyo. C.R. Kole (Ed.).
34. Messina R., Lain O., Marrazzo M.T., Cipriani G., Testolin R. New set of microsatellite loci isolated in apricot. Mol. Ecol. Notes 2004, 4:432-434.
35. Mousavi, A., Fatahi, R., Zamani, Z., Imani, A., Dicenta, F., Ortega, E., in press. Identification of self-incompatibility genotypes of Iranian almond cultivars. In: 5th International Symposium on Pistachios and Almonds, Sanliurfa, Turkey. Acta Hort.
36. Negri P., Bassi D., Magnanini E., Rizzo M., Bartolozzi F. Bittereness inheritance in apricot (P. armeniaca L.) seeds. Tree Genet. Gen. 2008, 4:767-776.
37. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 1973, 70:3321-3323.
38. Nei M., Li W.H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:5269-5273.
39. Ohta S., Nishitani C., Yamamoto T. Chloroplast microsatellites in Prunus, Rosaceae. Mol. Ecol. Notes 2005, 5:837-840.
40. Sánchez-Pérez R., Dicenta F., Martínez-Gómez P. Application SSR markers in apricot breeding, molecular characterization and genetic relationships. Sci. Hort. 2005, 103:305-315.
41. Sánchez-Pérez R., Ballester J., Dicenta F., Arús P., Martínez-Gómez P. Comparison of SSR polymorphisms using automated capillary sequencers, and polyacrylamide and agarose gel electrophoresis, implications for the assessment of genetic diversity and relatedness in almond. Sci. Hort. 2006, 108:310-316.
42. Sánchez-Pérez R., Martínez-Gómez P., Dicenta F., Egea J., Ruiz D. Level and transmission of genetic heterozygosity in apricot explored by SSR markers. Gen. Res. Crop. Evol. 2006, 53:763-770.
43. Sánchez-Pérez R., Howad W., Dicenta F., Arús P., Martínez-Gómez P. Mapping major genes and quantitative trait loci controlling agronomic traits in almond. Plant Breed. 2007, 126:310-318.
44. Sánchez-Pérez R., Jørgensen K., Olsen C.E., Dicenta F., Møller B.L. Bitterness in almonds. Plant. Physiol. 2008, 146:1040-1052.
45. Socias i Company R. The relationship of Prunus webbii and almond revisited. Nucis-Newsletter 2002, 11:17-19.
46. Socias i Company R., Felipe A.J. Almond: a diverse germplasm. HortScience 1992, 27. 718, 863.
47. Sorkheh K., Shiran B., Gradziel T.M., Epperson B.K., Martínez-Gómez P., Asadi E. Amplified Fragment Length Polymorphism as a tool for molecular characterization of almond germplasm, genetic diversity among cultivated genotypes and related wild species of almond, and its relationships with agronomic traits. Euphytica 2007, 156:327-344.
48. Sorkheh K., Shiran B., Rouhi V., Asadi E., Jahanbazi H., Moradi H., Gradziel T.M., Martínez-Gómez P. Phenotypic diversity within native Iranian almond (Prunus spp.) species and their breeding potential. Gen. Resour. Crop Evol. 2009, 56:947-961.
49. Stylianides D.C. La culture de l'amandier en Grece. Options Mediterran. 1976, 32:72-74.
50. Testolin R., Marrazo T., Cipriani G., Quarta R., Verde I., Dettori T., Pancaldi M., Sansavini S. Microsatellite DNA in peach (Prunus persica L. Batsch), it use in fingerprinting and testing the genetic origin of cultivars. Genome 2000, 43:512-520.
51. Testolin R., Messina R., Marrazo T., Huang G., Cipriani G. Microsatellites isolated in almond from an AC-repeat enriched library. Mol. Ecol. Notes 2004, 4:459-461.
52. Valizadeh B., Ershadi A. Identification of self-incompatibility alleles in Iranian almond cultivars by PCR using consensus and allele-specific primers. J. Hort. Sci. Biotechnol. 2009, 84:285-290.
53. Vanwaynsberghe, L., 2006. Description of, and possibilities to increase genetic diversity in modern apple. Ph.D. Thesis. Katholieke Universiteit Leuven, Belgium.
54. Vavilov N.I. Wild progenitors of the fruit trees of Turkistan and Caucasus and the problem of the origin of fruit trees. IX International Horticultural Congress Report and Proceedings 1930, 271-286.
55. Watkins R. Chery, plum, peach, apricot and almond. Evolution of Crop Plants 1976, 342-347. Longman, London. N.W. Simmonds (Ed.).
56. Wood M.N. Almond varieties in the United States. USDA Bull. 1925, 1282.
57. Xie H., Sui Y., Chang F.Q., Xu Y., Ma R.C. SSR allelic variation in almond (Prunus dulcis Mill.). Theor. Appl. Genet. 2006, 112:366-372.
58. Zeinalabedini M., Majourhat K., Khayam-Nekoui M., Grigorian V., Torchi M., Dicenta F., Martínez-Gómez P. Molecular characterization of almond cultivars and related wild species using nuclear and chloroplast DNA markers. J. Food Agric. Environ. 2007, 5:239-244.
59. Zeinalabedini M., Majourhat K., Khayam-Nekoui M., Grigorian V., Torchi M., Dicenta F., Martínez-Gómez P. Comparison of the use of morphological, protein and DNA markers in the genetic characterization of Iranian wild Prunus species. Sci. Hort. 2008, 116:80-88.
60. Zohary D., Hopf M. Domestication of Plants in Old World 1993, Clarendon Press, Oxford, UK.
61. Zohary M., Spiegel-Roy P. Beginnings of fruit growing in old world. Science 1975, 187:319-327.