Cloning and characterization of a xylanase, KRICT PX1 from the strain Paenibacillus sp. HPL-001

Biotechnology Advances

Volumn 28, Issue 5, 2010, Pages 594-601

  Hwang, In Taek ^a   Lim, Hee Kyung ^a   Song, Ha Young ^a   Cho, Soo Jin ^a   Chang, Jong San ^a   Park, No Joong ^a  

^a Korea Research Institute of Chemical Technology   (South Korea)

Author keywords

Characterization; Paenibacillus sp. HPL 001; Recombinant KRICT PX1; Xylanase

Indexed keywords

2-MERCAPTOETHANOL; CATALYTIC SITES; CONSERVED REGIONS; GEOBACILLUS STEAROTHERMOPHILUS; GLYCOSYL; HIGH ACTIVITY; PAENIBACILLUS SP. HPL-001; PH RANGE; SIMILARITY ANALYSIS; TLC ANALYSIS; XYLANASE ACTIVITY; XYLANASES; XYLOBIOSES;

AMINO ACIDS; CALCIUM CHLORIDE; ESCHERICHIA COLI; GENE ENCODING; ORGANIC ACIDS; SODIUM CHLORIDE;

CLONING;

ENDO 1,4 BETA XYLANASE; INORGANIC SALT; METAL; RECOMBINANT PROTEIN;

CLONE; COLIFORM BACTERIUM; ENZYME ACTIVITY; EXPERIMENTAL STUDY; GENE; PH; TEMPERATURE EFFECT;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; ENZYME STABILITY; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; KINETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PAENIBACILLUS; PH; POLYACRYLAMIDE GEL ELECTROPHORESIS; SEQUENCE ALIGNMENT; STATISTICAL MODEL; TEMPERATURE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENDO-1,4-BETA XYLANASES; ENZYME STABILITY; ESCHERICHIA COLI; HYDROGEN-ION CONCENTRATION; KINETICS; LINEAR MODELS; METALS; MOLECULAR SEQUENCE DATA; PAENIBACILLUS; RECOMBINANT PROTEINS; SALTS; SEQUENCE ALIGNMENT; TEMPERATURE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; GEOBACILLUS STEAROTHERMOPHILUS; PAENIBACILLUS; PAENIBACILLUS SP.;

EID: 77954382503     PISSN: 07349750     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biotechadv.2010.05.007     Document Type: Article

References (48)

1. Ash C., Priest F.G., Collins M.D. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe. Proposal for the creation of a new genus Paenibacillus. Antonie Leeuwenhoek 1993, 64:253-260.
2. Beg Q.K., Kapoor M., Mahajan L., Hoondal G.S. Microbial xylanases and their industrial applications: a review. Appl Microbiol Biotechnol 2001, 56:326-338.
3. Berrin J.G., Juge N. Factors affecting xylanase functionality in the degradation of arabinoxylans. Biotechnol Lett 2008, 30:1139-1150.
4. Biely P. Microbial xylanolytic systems. Trends Biotechnol 1985, 3:286-290.
5. Biely P., Vrsanska M., Tenkanen M., Kluepfel D. Endo-Β-xylanases families: differences in catalytic properties. J Biotechnol 1997, 57:151-166.
6. Blanco A., Diaz P., Zueco J., Parascandola P., Pastor F.I.J. A multidomain xylanase from a Bacillus sp. with a region homologous to thermostabilizing domains of thermophilic enzymes. Microbiol 1999, 145:2163-2170.
7. Bradford M.M. A rapid sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
8. Brennan Y., Callen W.N., Christoffersen L., Dupree P., Goubet F., Healey S., et al. Unusual microbial xylanases from insect guts. Appl Environ Microbiol 2004, 70:3609-3617.
9. Chang P., Tsai W.-S., Tsai C.-L., Tseng M.-J. Cloning and characterization of two thermostable xylanases from an alkaliphilic Bacillus firmus. Biochem Biophys Res Commun 2004, 319:1017-1025.
10. Chow V., Nong G., Preston J.F. Structure, function, and regulation of the aldouronate utilization gene cluster from Paenibacillus sp. Strain JDR-2. J Bacteriol 2007, 189:8863-8870.
11. Collins T., Gerday C., Feller G. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol Rev 2005, 29:3-23.
12. Gallardo O., Diaz P., Pastor F.I.J. Characterization of a Paenibacillus cell-associated xylanase with high activity on aryl-xylosides: a new subclass of family 10 xylanases. Appl Microbiol Biotechnol 2003, 61:226-233.
13. Gupta V.K., Gaur R., Yadava K.S., Darmwal N.S. Optimization of xylanase production from free and immobilized cells of Fusarium solani F7. Bioresour 2009, 4:932-945.
14. Howard R.L., Abotsi E., Jansen van Rensburg E.L., Howard S. Lignocellulose biotechnology: issues of bioconversion and enzyme production. Afr J Biotechnol 2003, 2:602-619.
15. Hu Y., Zhang G., Li A., Chen J., Ma L. Cloning and enzymatic characterization of a xylanase gene from a soil-derived metagenomic library with an efficient approach. Appl Microbiol Biotechnol 2008, 80:823-830.
16. Ito Y., Tomita T., Roy N., Nakano A., Sugawara-Tomita N., Watanabe S., et al. Cloning, expression, and cell surface localization of Paenibacillus sp. strain W-61 xylanase 5, a multidomain xylanase. Appl Environ Microbiol 2003, 69:6969-6978.
17. Jeffries T.W. Biochemistry and genetics of microbial xylanases. Curr Opin Biotech 1996, 7:337-342.
18. Jorge I., De la Rosa O., Navas-Cortes J.A., Jimenez-Diaz R.M., Tena M. Extracellular xylanases from two pathogenic races of Fusarium oxysporum f. sp. ciceris: enzyme production in culture and purification and characterization of a major isoform as an alkaline endo-Β-(1, 4)-xylanase of low molecular weight. Antonie Leeuwenhoek 2005, 88:49-59.
19. Kenealy W.R., Jeffries T.W. Rapid 2, 2'-bicinchoninic-based xylanase assay compatible with high throughput screening. Biotechnol Lett 2003, 25:1619-1623.
20. Kulkarni N., Shendye A., Rao M. Molecular and biotechnological aspects of xylanases. FEMS Microbiol Rev 1999, 23:411-456.
21. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685. (London).
22. Lane D.J. 16S/23S rRNA sequencing. Nucleic acid techniques in bacterial systematics 1991, 115-175. Wiley, New York. E. Stackebrandt, M. Goodfellow (Eds.).
23. Lee C.C., Kibblewhite-Accinelli R.E., Wagschal K., Robertson G.H., Wong D.W. Cloning and characterization of a cold-active xylanase enzyme from an environmental DNA library. Extremophiles 2006, 10:295-300.
24. Lee-Chiang L., Chi-Yuang C., Yen-Ru P., Yaw-Kuen L., Jing-Jer L. Rapid and selective isolation of b-xylosidase through an activity based chemical approach. Biotechnol J 2006, 1:197-202.
25. Lineweaver H., Burk D. The determination of enzyme dissociation constants. J Amer Chem Soc 1934, 56:658-666.
26. Liu L., Tian H., Cheng Y., Jiang Z., Yang S. Purification and characterization of a thermosatble cellulase-free xylanase from the newly isolated Paecilomyces themophila. Enzyme Microbiol Technol 2006, 38:780-787.
27. Ly H.D., Withers S.G. Mutagenesis of glycosidases. Annu Rev Biochem 1999, 68:487-522.
28. Miller G.L. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 1959, 31:426-428.
29. Miyazaki K., Takenouchi M., Kondo H., Noro N., Suzuki M., Tsuda S. Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution. J Biol Chem 2006, 281:10236-10242.
30. Muthezhilan R., Ashok R., Jayalakshmi S. Production and optimization of thermostable alkaline xylanase by Penicillium oxalicum in solid state fermentation. Afr J Microbiol Res 2007, 6:20-28.
31. Nakamura S., Wakabayashi K., Nakai R., Aono R., Horikoshi K. Purification and some properties of an alkaline xylanase from alkaliphilic Bacillus sp. Strain 41M-1. Appl Environ Microbiol 1993, 59:2311-2316.
32. Natesh R., Bhanumoorthy P., Vithayathil P.J., Sekar K., Ramakumar S., Viswamitra M.A. Crystal structure at 1.8A resolution and proposed amino acid sequence of a thermostable xylanase from Thermoascus aurantiacus. J Mol Biol 1999, 288:999-1012.
33. Palmqvist E., Hahn-Hagerdal B. Fermentation of lignocellulosic hydrolyzates. II. Inhibitors and mechanism of inhibition. Bioresour Technol 2000, 74:25-33.
34. Palackal N., Brennan Y., Callen W.N., Dupree P., Frey G., Goubet F., et al. An evolutionary route to xylanase process fitness. Protein Sci 2004, 13:494-503.
35. Ragauskas A.J., Williams C.K., Davison B.H., Britovsek G., Cairney J., Eckert C.A., et al. The path forward for biofuels and biomaterials. Science 2006, 311:484-489.
36. Ratankhanokchai K., Kyu K.L., Tanticharoen M. Purification and properties of a xylan-binding endoxylanase from alkaliphilic Bacillus sp. Strain K-1. Appl Environ Microbiol 1999, 65:694-697.
37. Saha B.C. Hemicellulose bioconversion. J Ind Microbiol Biotechnol 2003, 30:279-291.
38. St.John F., Rice J.D., Preston J.F. Paenibacillus sp. Strain JDR-2 and xynA1: a novel system for methylglucuronoxylan utilization. Appl Environ Microbiol 2006, 72:1496-1506.
39. Subramaniyan S., Prema P. Cellulase-free xylanases from Bacillus and other microorganisms. FEMS Microbiol Lett 2000, 183:1-7.
40. Taneja K., Gupta S., Kuhad R.C. Properties and application of a partially purified alkaline xylanase from an alkalophilic fungus Aspergillus nidulans KK-99. Bioresour Technol 2002, 85:39-42.
41. Teather R.M., Wood P.J. Use of congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 1982, 43:777-780.
42. Watanabe S., Viet D.N., Kaneko J., Kamio Y., Yoshida S. Cloning, expression, and transglycosylation reaction of Paenibacillus sp. Strain W-61 Xylanase 1. Biosci Biotechnol Biochem 2008, 72:951-958.
43. Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991, 173:697-703.
44. Whistler R.L., Richards E.L. Hemicelluloses. The carbohydrates 1970, 447-469. Academic Press, New York. W. Pigman, D. Horton (Eds.).
45. Wong K.K.Y., Tan L.U.L., Saddler J.N. Multiplicity of beta-1, 4-xylanases in microorganisms: functions and applications. Microbiol Rev 1988, 52:305-317.
46. Wu S., Liu B., Zhang X. Characterization of a recombinant thermostable xylanase from deep-sea thermophilic Geobacillus sp. MT-1 in East Pacific. Appl Microbiol Biotechnol 2006, 72:1210-1216.
47. Yang V.W., Zhuang Z., Elegir G., Jeffries T.W. Alkaline-active xylanase produced by an alkaliphilic Bacillus sp isolated from kraft pulp. J Ind Microbiol 1995, 15:434-441.
48. Yoon K.H. Cloning of the Bacillus subtilis AMX-4 xylanase gene and characterization of the gene product. J Microbiol Biotechnol 2009, 19:1514-1519.