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Volumn 24, Issue 13, 2008, Pages

Guided genome halving: Hardness, heuristics and the history of the Hemiascomycetes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASCOMYCETES; CANDIDA GLABRATA; CONTROLLED STUDY; FUNCTIONAL GENOMICS; FUNGAL GENETICS; GENE CONSTRUCT; GENE DUPLICATION; GENETIC ALGORITHM; GENETIC DATABASE; GENETIC VARIABILITY; GENOME ANALYSIS; HEMIASCOMYCETES; MOLECULAR EVOLUTION; NONHUMAN; PLESIOMORPHY; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SCALE UP; YEAST;

EID: 46249099578     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn146     Document Type: Article
Times cited : (31)

References (22)
  • 1
    • 33750264868 scopus 로고    scopus 로고
    • Bergeron,A. et al.(2006) A unifying view of genome rearrangements. In Bücher,P. and Moret,BM.E. (eds) Algorithms in Bioinformatics. Proceedings of WABI 2006. Lecture Notes in Computer Science 4175, Springer, Berlin. pp. 163-173.
    • Bergeron,A. et al.(2006) A unifying view of genome rearrangements. In Bücher,P. and Moret,BM.E. (eds) Algorithms in Bioinformatics. Proceedings of WABI 2006. Lecture Notes in Computer Science 4175, Springer, Berlin. pp. 163-173.
  • 2
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque,G and Pevzner,P. (2002) Genome-scale evolution: Reconstructing gene orders in the ancestral species. Genome Res., 12, 26-36.
    • (2002) Genome Res , vol.12 , pp. 26-36
    • Bourque, G.1    Pevzner, P.2
  • 3
    • 33544458942 scopus 로고    scopus 로고
    • The complexity of the breakpoint median problem
    • Centre de recherches mathématiques, Université de Montréal. Montreal, Canada
    • Bryant,D. (1998) The complexity of the breakpoint median problem. Technical Report CRM-2579, Centre de recherches mathématiques, Université de Montréal. Montreal, Canada.
    • (1998) Technical Report CRM-2579
    • Bryant, D.1
  • 4
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
    • Byrne,KP. and Wolfe,KH. (2005) The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res., 15, 1456-61.
    • (2005) Genome Res , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 5
    • 3843132934 scopus 로고    scopus 로고
    • The reversals median problem
    • Caprara,A. (2003) The reversals median problem. INFORMS J. Comput. 15, 93-113.
    • (2003) INFORMS J. Comput , vol.15 , pp. 93-113
    • Caprara, A.1
  • 6
    • 37249014401 scopus 로고    scopus 로고
    • Choi,V. et al. (2007) Algorithms for the extraction of synteny blocks from comparative maps. In Giancarlo,R. and Hannenhalli,S. (eds) Proceedings of the WABI 2007 Workshop on Algorithms in Bioinformatics. Lecture Notes in Bioinformatics 4645. Springer, Heidelberg. pp. 277-288.
    • Choi,V. et al. (2007) Algorithms for the extraction of synteny blocks from comparative maps. In Giancarlo,R. and Hannenhalli,S. (eds) Proceedings of the WABI 2007 Workshop on Algorithms in Bioinformatics. Lecture Notes in Bioinformatics 4645. Springer, Heidelberg. pp. 277-288.
  • 7
    • 3042720475 scopus 로고    scopus 로고
    • Genome evolution in yeasts
    • Dujon,B. et al. (2004) Genome evolution in yeasts. Nature, 430, 35-44.
    • (2004) Nature , vol.430 , pp. 35-44
    • Dujon, B.1
  • 8
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk,N. and Sankoff,D. (2003) The reconstruction of doubled genomes. SIAM J. Comput., 32, 754-92.
    • (2003) SIAM J. Comput , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 10
    • 10244239321 scopus 로고    scopus 로고
    • Life with 6000 genes
    • Goffeau,A. et al.(1996) Life with 6000 genes. Science, 275, 1051-1052.
    • (1996) Science , vol.275 , pp. 1051-1052
    • Goffeau, A.1
  • 11
    • 0000071395 scopus 로고
    • Some distance properties of latent root and vector methods used in multivariate analysis
    • Gower,J.C. (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika, 53, 325-328.
    • (1966) Biometrika , vol.53 , pp. 325-328
    • Gower, J.C.1
  • 12
    • 46249126961 scopus 로고    scopus 로고
    • GRAPPA (Genome Rearrangements Analysis under Parsimony and Other Phylogenetic Algorithms) Available at http://www.es.unm.edu/moret/ GRAPPA/. (Date last accessed May 2008)
    • GRAPPA (Genome Rearrangements Analysis under Parsimony and Other Phylogenetic Algorithms) Available at http://www.es.unm.edu/moret/ GRAPPA/. (Date last accessed May 2008)
  • 13
    • 0037540048 scopus 로고    scopus 로고
    • Pbylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses
    • Kurtzman,C.P. and Robnett,C.J. (2003) Pbylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses. FEMS Yeast Res., 3, 417-32.
    • (2003) FEMS Yeast Res , vol.3 , pp. 417-432
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 14
    • 46249115342 scopus 로고    scopus 로고
    • Pe'er,I. and Shamir,R. (1998) The median problems for breakpoints are NP- complete. Electronic Colloquium on Computational Complexity Technical Report 98-071, Available at http://www.eccc.uni-trier.de/ eccc. (Date last accessed May 2008).
    • Pe'er,I. and Shamir,R. (1998) The median problems for breakpoints are NP- complete. Electronic Colloquium on Computational Complexity Technical Report 98-071, Available at http://www.eccc.uni-trier.de/ eccc. (Date last accessed May 2008).
  • 15
    • 46249088902 scopus 로고    scopus 로고
    • R Development Core Team. (2007) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Available at http://www.R-project.org. (Date last accessed May 2008).
    • R Development Core Team. (2007) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Available at http://www.R-project.org. (Date last accessed May 2008).
  • 16
    • 34547844124 scopus 로고    scopus 로고
    • Polyploids, genome halving and phylogeny
    • Sankoff,D. et al.(2007) Polyploids, genome halving and phylogeny. Bioinformatics, 23, i433-i439.
    • (2007) Bioinformatics , vol.23
    • Sankoff, D.1
  • 17
    • 0038658640 scopus 로고    scopus 로고
    • Efficient algorithms for multichromosomal genome rearrangements
    • Tesler,G. (2002) Efficient algorithms for multichromosomal genome rearrangements. J. Comput. Syst. Sci., 65, 587-609.
    • (2002) J. Comput. Syst. Sci , vol.65 , pp. 587-609
    • Tesler, G.1
  • 18
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe,K.H. and Shields,D.C. (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature, 387, 708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 19
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion, and block interchange
    • Yancopoulos,S. et al.(2005) Efficient sorting of genomic permutations by translocation, inversion, and block interchange. Bioinformatics, 21, 3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1
  • 20
    • 34547846887 scopus 로고    scopus 로고
    • Genome halving with an outgroup
    • Zheng,C. et al.(2006) Genome halving with an outgroup. Evol. Bioinform., 2, 319-326.
    • (2006) Evol. Bioinform , vol.2 , pp. 319-326
    • Zheng, C.1
  • 21
    • 36248971129 scopus 로고    scopus 로고
    • Removing noise and ambiguities from comparative maps in rearrangement analysis
    • Zheng,C. et al.(2007a) Removing noise and ambiguities from comparative maps in rearrangement analysis. Trans. Comput. Biol. Bioinform., 4, 515-522.
    • (2007) Trans. Comput. Biol. Bioinform , vol.4 , pp. 515-522
    • Zheng, C.1
  • 22
    • 38349072114 scopus 로고    scopus 로고
    • Zheng,C. et al. (2007b) Parts of the problem of polyploids in rearrangement phylogeny. In Tesler,G. and Durand,D. (eds) Proceedings of the RECOMB 2007 Workshop on Comparative Genomics. Lecture Notes in Computer Science 4751, Springer, New York. pp. 162-176.
    • Zheng,C. et al. (2007b) Parts of the problem of polyploids in rearrangement phylogeny. In Tesler,G. and Durand,D. (eds) Proceedings of the RECOMB 2007 Workshop on Comparative Genomics. Lecture Notes in Computer Science 4751, Springer, New York. pp. 162-176.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.