A bacterial ortholog of class II lysyl-tRNA synthetase activates lysine

FEBS Letters

Volumn 584, Issue 14, 2010, Pages 3055-3060

  Ambrogelly, Alexandre ^a   O'Donoghue, Patrick ^a   Söll, Dieter ^a   Moses, Sarath ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Aminoacyl tRNA; GenX; Lysyl; PoxA; Translation; TRNA; YjeA

Indexed keywords

LYSINE; LYSINE DERIVATIVE; LYSINE TRANSFER RNA; LYSINE TRANSFER RNA LIGASE; AMINO ACID TRANSFER RNA LIGASE; AMINOACYL TRANSFER RNA; TRNA, LYSINE; TRNA, LYSINE-;

AMINOACYLATION; ARTICLE; BINDING SITE; CONTROLLED STUDY; ESCHERICHIA COLI; IN VITRO STUDY; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; ANTICODON; CHEMISTRY; ENZYME ACTIVE SITE; GENETICS; METABOLISM;

BACTERIA (MICROORGANISMS); NEGIBACTERIA;

AMINO ACYL-TRNA SYNTHETASES; ANTICODON; BINDING SITES; CATALYTIC DOMAIN; LYSINE; LYSINE-TRNA LIGASE; RNA, TRANSFER, AMINO ACYL;

EID: 77954174219     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2010.05.036     Document Type: Article

References (26)

1. Ibba M., Söll D. Aminoacyl-tRNA synthesis. Annu. Rev. Biochem. 2000, 69:617-650.
2. Woese C.R., Olsen G.J., Ibba M., Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol. Mol. Biol. Rev. 2000, 64:202-236.
3. Schimmel P., Ribas De Pouplana L. Footprints of aminoacyl-tRNA synthetases are everywhere. Trends Biochem. Sci. 2000, 25:207-209.
4. O'Donoghue P., Luthey-Schulten Z. On the evolution of structure in the aminoacyl-tRNA synthetases. Microbiol. Mol. Biol. Rev. 2003, 67:550-573.
5. Ahel I., Korencic D., Ibba M., Söll D. Trans-editing of mischarged tRNAs. Proc. Natl. Acad. Sci. USA 2003, 100:15422-15427.
6. Korencic D., Ahel I., Schelert J., Sacher M., Ruan B., Stathopoulos C., Blum P., Ibba M., Söll D. A freestanding proofreading domain is required for protein synthesis quality control in Archaea. Proc. Natl. Acad. Sci. USA 2004, 101:10260-10265.
7. Salazar J.C., Ambrogelly A., Crain P.F., McCloskey J.A., Söll D. A truncated aminoacyl-tRNA synthetase modifies RNA. Proc. Natl. Acad. Sci. USA 2004, 101:7536-7541.
8. Asp QUC anticodon. Nucleic Acids Res. 2004, 32:2768-2775.
9. Sissler M., Delorme C., Bond J., Ehrlich S.D., Renault P., Francklyn C. An aminoacyl-tRNA synthetase paralog with a catalytic role in histidine biosynthesis. Proc. Natl. Acad. Sci. USA 1999, 96:8985-8990.
10. Roy H., Becker H.D., Reinbolt J., Kern D. When contemporary aminoacyl-tRNA synthetases invent their cognate amino acid metabolism. Proc. Natl. Acad. Sci. USA 2003, 100:9837-9842.
11. Kong L., Fromant M., Blanquet S., Plateau P. Evidence for a new Escherichia coli protein resembling a lysyl-tRNA synthetase. Gene 1991, 108:163-164.
12. Brevet A., Chen J., Lévêque F., Blanquet S., Plateau P. Comparison of the enzymatic properties of the two Escherichia coli lysyl-tRNA synthetase species. J. Biol. Chem. 1995, 270:14439-14444.
13. Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E., Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T., Connor R., Davies R., Devlin K., Feltwell T., Gentles S., Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J., Moule S., Murphy L., Oliver K., Osborne J., Quail M.A., Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J., Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S., Barrell B.G. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 1998, 393:537-544.
14. Maloney E., Stankowska D., Zhang J., Fol M., Cheng Q.J., Lun S., Bishai W.R., Rajagopalan M., Chatterjee D., Madiraju M.V. The two-domain LysX protein of Mycobacterium tuberculosis is required for production of lysinylated phosphatidylglycerol and resistance to cationic antimicrobial peptides. PLoS Pathog. 2009, 5:e1000534.
15. Onesti S., Desogus G., Brevet A., Chen J., Plateau P., Blanquet S., Brick P. Structural studies of lysyl-tRNA synthetase: conformational changes induced by substrate binding. Biochemistry 2000, 39:12853-12861.
16. Ataide S.F., Ibba M. Discrimination of cognate and noncognate substrates at the active site of class II lysyl-tRNA synthetase. Biochemistry 2004, 43:11836-11841.
17. Takita T., Ohkubo Y., Shima H., Muto T., Shimizu N., Sukata T., Ito H., Saito Y., Inouye K., Hiromi K., Tonomura B. Lysyl-tRNA synthetase from Bacillus stearothermophilus. Purification, and fluorimetric and kinetic analysis of the binding of substrates, l-lysine and ATP. J. Biochem. 1996, 119:680-689.
18. Levengood J., Ataide S.F., Roy H., Ibba M. Divergence in noncognate amino acid recognition between class I and class II lysyl-tRNA synthetases. J. Biol. Chem. 2004, 279:17707-17714.
19. Takita T., Inouye K. Transition state stabilization by the N-terminal anticodon-binding domain of lysyl-tRNA synthetase. J. Biol. Chem. 2002, 277:29275-29282.
20. Van Dyk T.K., Smulski D.R., Chang Y.Y. Pleiotropic effects of poxA regulatory mutations of Escherichia coli and Salmonella typhimurium, mutations conferring sulfometuron methyl and alpha-ketobutyrate hypersensitivity. J. Bacteriol. 1987, 169:4540-4546.
21. Kaniga K., Compton M.S., Curtiss R., Sundaram P. Molecular and functional characterization of Salmonella enterica serovar typhimurium poxA gene: effect on attenuation of virulence and protection. Infect. Immun. 1998, 66:5599-5606.
22. Bailly M., de Crécy-Lagard V. Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial species. Biol. Direct. 2010, 5:3.
23. Aoki H., Xu J., Emili A., Chosay J.G., Golshani A., Ganoza M.C. Interactions of elongation factor EF-P with the Escherichia coli ribosome. FEBS J. 2008, 275:671-681.
24. Shrader T.E., Tobias J.W., Varshavsky A. The N-end rule in Escherichia coli: cloning and analysis of the leucyl, phenylalanyl-tRNA-protein transferase gene aat. J. Bacteriol. 1993, 175:4364-4374.
25. Roy H., Dare K., Ibba M. Adaptation of the bacterial membrane to changing environments using aminoacylated phospholipids. Mol. Microbiol. 2009, 71:547-550.
26. Fan F., Vetting M.W., Frantom P.A., Blanchard J.S. Structures and mechanisms of the mycothiol biosynthetic enzymes. Curr. Opin. Chem. Biol. 2009, 13:451-459.