Impact of synchrotron radiation on macromolecular crystallography: A personal view

Journal of Synchrotron Radiation

Volumn 17, Issue 4, 2010, Pages 433-444

  Dauter, Zbigniew ^a   Jaskolski, Mariusz ^b   Wlodawer, Alexander ^c  

^a ARGONNE NATIONAL LABORATORY   (United States)

^b ADAM MICKIEWICZ UNIVERSITY   (Poland)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

macromolecular crystallography; science history; structural biology

Indexed keywords

DIFFRACTION DATA; MACROMOLECULAR CRYSTALLOGRAPHY; MACROMOLECULAR CRYSTALS; PERSONAL EXPERIENCE; REVOLUTIONARY CHANGES; STRUCTURAL BIOLOGY; SYNCHROTRON RADIATION SOURCE; SYNCHROTRON SOURCE;

CRYSTALLOGRAPHY; MINERALOGY; QUANTUM OPTICS; SYNCHROTRON RADIATION; SYNCHROTRONS;

MACROMOLECULES;

PROTEIN;

ARTICLE; CHEMISTRY; GERMANY; HISTORY; MACROMOLECULE; METHODOLOGY; PROTEIN CONFORMATION; SYNCHROTRON; UNITED STATES; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; GERMANY; HISTORY, 20TH CENTURY; MACROMOLECULAR SUBSTANCES; PROTEIN CONFORMATION; PROTEINS; SYNCHROTRONS; UNITED STATES;

EID: 77954070786     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S0909049510011611     Document Type: Review

References (75)

1. Abad-Zapatero, C. (2004). Structure, 12, 523-527.
2. Abrahams, J. P. & Leslie, A. G. W. (1996). Acta Cryst. D52, 30-42.
3. Abrahams, J. P., Leslie, A. G. W., Lutter, R. & Walker, J. E. (1994) Nature (London), 370, 621-628.
4. Astbury, W. T. & Street, A. (1932). Philos. Trans. R. Soc. A, 230, 75-101.
5. Ban, N., Nissen, P., Hansen, J., Moore, P. B. & Steitz, T. A. (2000). Science, 289, 905-920.
6. Bergh, M., Huldt, G., Timneanu, N., Maia, F. R. & Hajdu, J. (2008). Q. Rev. Biophys. 41, 181-204.
7. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
8. Bernal, J. D. (1939). Nature (London), 143, 663-667.
9. Bernal, J. D. & Crowfoot, D. (1934). Nature (London), 133, 794-795.
10. Blundell, T. L., Sibanda, B. L., Montalvao, R. W., Brewerton, S., Chelliah, V., Worth, C. L., Harmer, N. J., Davies, O. & Burke, D. (2006). Philos. Trans. R. Soc. London Ser. B, 361, 413-423.
11. Bourgeois, D. & Royant, A. (2005). Curr. Opin. Struct. Biol. 15, 538-547.
12. Bujacz, G., Jaskólski, M., Alexandratos, J., Wlodawer, A., Merkel, G., Katz, R. A. & Skalka, A. M. (1995). J. Mol. Biol. 253, 333-346.
13. Cassetta, A., Deacon, A. M., Ealick, S. E., Helliwell, J. R. & Thompson, A. W. (1999). J. Synchrotron Rad. 6, 822-833.
14. Coulibaly, F., Chiu, E., Ikeda, K., Gutmann, S., Haebel, P. W., Schulze-Briese, C., Mori, H. & Metcalf, P. (2007). Nature (London), 446, 97-101.
15. Cramer, P., Bushnell, D. A. & Kornberg, R. D. (2001). Science, 292, 1863-1876.
16. Dauter, Z., Dauter, M. & Dodson, E. J. (2002). Acta Cryst. D58, 494-506.
17. Dauter, Z., Dauter, M. & Rajashankar, K. R. (2000). Acta Cryst. D56, 232-237.
18. Doniach, S., Hodgson, K., Lindau, I., Pianetta, P. & Winick, H. (1997). J. Synchrotron Rad. 4, 380-395.
19. Fourme, R., Shepard, W., Schiltz, M., Prangé, T., Ramin, M., Kahn, R., de la Fortelle, E. & Bricogne, G. (1999). J. Synchrotron Rad. 6, 834-844.
20. Franklin, R. E. & Gosling, R. G. (1953). Nature (London), 171, 740-741.
21. Grabowski, M., Chruszcz, M., Zimmerman, M. D., Kirillova, O. & Minor, W. (2009). Infect. Disord. Drug Targets, 9, 459-474.
22. Guillot, B., Jelsch, C., Podjarny, A. & Lecomte, C. (2008). Acta Cryst. D64, 567-588.
23. Guss, J. M., Merritt, E. A., Phizackerley, R. P., Hedman, B., Murata, M., Hodgson, K. O. & Freeman, H. C. (1988). Science, 241, 806-811.
24. Hajdu, J., Machin, P. A., Campbell, J. W., Greenhough, T. J., Clifton, I. J., Zurek, S., Gover, S., Johnson, L. N. & Elder, M. (1987). Nature (London), 329, 178-181.
25. Harada, S., Yasui, M., Murakawa, K., Kasai, N. & Satow, Y. (1986). J. Appl. Cryst. 19, 448-452.
26. Harmsen, A., Leberman, R. & Schulz, G. E. (1976). J. Mol. Biol. 104, 311-314.
27. Heldwein, E. E., Macia, E., Wang, J., Yin, H. L., Kirchhausen, T. & Harrison, S. C. (2004). Proc. Natl. Acad. Sci. USA, 101, 14108-14113.
28. Helliwell, J. R. (1988). J. Cryst. Growth, 90, 259-272.
29. Helliwell, J. R. (1992). Macromolecular Crystallography with Synchrotron Radiation. Cambridge University Press.
30. Helliwell, J. R., Habash, J., Cruickshank, D. W. J., Harding, M. M., Greenhough, T. J., Campbell, J. W., Clifton, I. J., Elder, M., Machin, P. A., Papiz, M. Z. & Zurek, S. (1989). J. Appl. Cryst. 22, 483-497.
31. Hendrickson, W. A. (1985). Trans. Am. Crystallogr. Assoc. 21, 11-21.
32. Hendrickson, W. A. (1991). Science, 254, 51-58.
33. Hendrickson, W. A. (1999). J. Synchrotron Rad. 6, 845-851.
34. Hendrickson, W. A., Horton, J. R. & LeMaster, D. M. (1990). EMBO J. 9, 1665-1672.
35. Hendrickson, W. A., Pahler, A., Smith, J. L., Satow, Y., Merritt, E. A. & Phizackerley, R. P. (1989). Proc. Natl. Acad. Sci. USA, 86, 2190-2194.
36. Hendrickson, W. A., Smith, J. L., Phizackerley, R. P. & Merritt, E. A. (1988). Proteins, 4, 77-88.
37. Herzenberg, A. & Lau, H. S. M. (1967). Acta Cryst. 22, 24-28.
38. Holmes, K. C. & Rosenbaum, G. (1998). J. Synchrotron Rad. 5, 147-153.
39. Hope, H. (1988). Acta Cryst. B44, 22-26.
40. Hope, H., Frolow, F., von Böhlen, K., Makowski, I., Kratky, C., Halfon, Y., Danz, H., Webster, P., Bartels, K. S., Wittmann, H. G. & Yonath, A. (1989). Acta Cryst. B45, 190-199.
41. Howard, E. I., Sanishvili, R., Cachau, R. E., Mitschler, A., Chevrier, B., Barth, P., Lamour, V., Van Zandt, M., Sibley, E., Bon, C., Moras, D., Schneider, T. R., Joachimiak, A. & Podjarny, A. (2004). Proteins, 55, 792-804.
42. Hünefeld, F. L. (1840). Chemismus in der Thierischen Organization, p. 160.
43. Leipzig. Jelsch, C., Teeter, M. M., Lamzin, V., Pichon-Pesme, V., Blessing, R. H. & Lecomte, C. (2000). Proc. Natl. Acad. Sci. USA, 97, 3171-3176.
44. Jiang, Y., Lee, A., Chen, J., Cadene, M., Chait, B. T. & MacKinnon, R. (2002). Nature (London), 417, 515-522.
45. Kahn, R., Fourme, R., Bosshard, R., Chiadmi, M., Risler, J. L., Dideberg, O. & Wery, J. P. (1985). FEBS Lett. 179, 133-137.
46. Karle, J. (1980). Int. J. Quant. Chem. S7, 357-367.
47. Kendrew, J. C., Bodo, G., Dintzis, H. M., Parrish, R. G., Wyckoff, H. & Phillips, D. C. (1958). Nature (London), 181, 662-666.
48. Kendrew, J. C., Dickerson, R. E., Strandberg, B. E., Hart, R. G., Davies, D. R., Phillips, D. C. & Shore, V. C. (1960). Nature (London), 185, 422-427.
49. Korszun, Z. R. (1987). J. Mol. Biol. 196, 413-419.
50. Lytle, F. W. (1999). J. Synchrotron Rad. 6, 123-134.
51. Milani, M., Nardini, M., Pesce, A., Mastrangelo, E. & Bolognesi, M. (2008). IUBMB Life, 60, 154-158.
52. Mitchell, C. M. (1957). Acta Cryst. 10, 475-476.
53. Moffat, K., Szebenyi, D. & Bilderback, D. (1984). Science, 223, 1423-1425.
54. Mokulskaya, T. D., Mokulskii, M. A., Nikitin, A. A., Anashin, V. V., Kuplipanov, G. N., Lukashev, V. A. & Skrinskii, A. N. (1974). Akad. Nauk. SSSR Dokl. 218, 824-827.
55. Okaya, Y. & Pepinsky, R. (1956). Phys. Rev. 103, 1645-1647.
56. Perutz, M. F., Rossmann, M. G., Cullis, A. F., Muirhead, H., Will, G. & North, A. C. T. (1960). Nature (London), 185, 416-421.
57. Phillips, J. C., Wlodawer, A., Goodfellow, J. M., Watenpaugh, K. D., Sieker, L. C., Jensen, L. H. & Hodgson, K. O. (1977). Acta Cryst. A33, 445-455.
58. Phillips, J. C., Wlodawer, A., Yevitz, M. M. & Hodgson, K. O. (1976). Proc. Natl. Acad. Sci. USA, 73, 128-132.
59. Protein Data Bank (1971). Nat. New Biol. 233, 223.
60. Protein Data Bank (1973). Acta Cryst. B29, 1746.
61. Ravelli, R. B., Leiros, H. K., Pan, B., Caffrey, M. & McSweeney, S. (2003). Structure, 11, 217-224.
62. Reichert, E. T. & Brown, A. P. (1909). The differentiation and specificity of corresponding proteins and their vital substances in relation to biological classification and organic evolution. Washington: Carnegie Institution of Washington.
63. Reinisch, K. M., Nibert, M. L. & Harrison, S. C. (2000). Nature (London), 404, 960-967.
64. Rosenbaum, G., Holmes, K. C. & Witz, J. (1971). Nature (London), 230, 434-437.
65. Schiltz, M. & Bricogne, G. (2008). Acta Cryst. D64, 711-729.
66. Schluenzen, F., Tocilj, A., Zarivach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., Franceschi, F. & Yonath, A. (2000). Cell, 102, 615-623.
67. Schwinger, J. (1949). Phys. Rev. 12, 1912-1925.
68. Selmer, M., Dunham, C. M., Murphy, F. V., Weixlbaumer, A., Petry, S., Kelley, A. C., Weir, J. R. & Ramakrishnan, V. (2006). Science, 313, 1935-1942.
69. Teng, T.-Y. (1990). J. Appl. Cryst. 23, 387-391.
70. Wang, J., Dauter, M., Alkire, R., Joachimiak, A. & Dauter, Z. (2007). Acta Cryst. D63, 1254-1268.
71. Watson, J. D. & Crick, F. H. C. (1953). Nature (London), 171, 737-738.
72. Weik, M., Ravelli, R. B., Kryger, G., McSweeney, S., Raves, M. L., Harel, M., Gros, P., Silman, I., Kroon, J. & Sussman, J. L. (2000). Proc. Natl. Acad. Sci. USA, 97, 623-628.
73. Wimberly, B. T., Brodersen, D. E., Clemons, W. M. Jr, Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T. & Ramakrishnan, V. (2000). Nature (London), 407, 327-339.
74. Yang, W., Hendrickson, W. A., Crouch, R. J. & Satow, Y. (1990). Science, 249, 1398-1405.
75. Zwart, P. H., Banumathi, S., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1958-1963.