-
2
-
-
35848961668
-
How chromatin-binding modules interpret histone modifications: Lessons from professional pocket pickers
-
Taverna SD, Li H, Ruthenburg AJ, Allis CD, Patel DJ. How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat Struct Mol Biol 2007; 14:1025-40.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1025-1040
-
-
Taverna, S.D.1
Li, H.2
Ruthenburg, A.J.3
Allis, C.D.4
Patel, D.J.5
-
3
-
-
0043127085
-
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains
-
Fischle W, Wang Y, Jacobs SA, Kim Y, Allis CD, Khorasanizadeh S. Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains. Genes Dev 2003; 17:1870-81.
-
(2003)
Genes Dev
, vol.17
, pp. 1870-1881
-
-
Fischle, W.1
Wang, Y.2
Jacobs, S.A.3
Kim, Y.4
Allis, C.D.5
Khorasanizadeh, S.6
-
4
-
-
33644865137
-
Intrinsic protein disorder, amino acid composition and histone terminal domains
-
Hansen JC, Lu X, Ross ED, Woody RW. Intrinsic protein disorder, amino acid composition and histone terminal domains. J Biol Chem 2006; 281:1853-6.
-
(2006)
J Biol Chem
, vol.281
, pp. 1853-1856
-
-
Hansen, J.C.1
Lu, X.2
Ross, E.D.3
Woody, R.W.4
-
5
-
-
0037304408
-
Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins
-
Anantharaman V, Aravind L, Koonin EV. Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins. Curr Opin Chem Biol 2003; 7:12-20.
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 12-20
-
-
Anantharaman, V.1
Aravind, L.2
Koonin, E.V.3
-
7
-
-
0032859140
-
Evolution of protein function, from a structural perspective
-
Todd AE, Orengo CA, Thornton JM. Evolution of protein function, from a structural perspective. Curr Opin Chem Biol 1999; 3:548-56.
-
(1999)
Curr Opin Chem Biol
, vol.3
, pp. 548-556
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
8
-
-
67650267001
-
Merging chemical and biological space: Structural mapping of enzyme binding pocket space
-
Weskamp N, Hullermeier E, Klebe G. Merging chemical and biological space: Structural mapping of enzyme binding pocket space. Proteins 2009; 76:317-30.
-
(2009)
Proteins
, vol.76
, pp. 317-330
-
-
Weskamp, N.1
Hullermeier, E.2
Klebe, G.3
-
9
-
-
0030631230
-
Discrete representations of the protein Calpha chain
-
de la Cruz XF, Mahoney MW, Lee B. Discrete representations of the protein Calpha chain. Fold Des 1997; 2:223-34.
-
(1997)
Fold Des
, vol.2
, pp. 223-234
-
-
de la Cruz, X.F.1
Mahoney, M.W.2
Lee, B.3
-
10
-
-
0000538815
-
Analytical molecular surface calculation
-
Connolly ML. Analytical molecular surface calculation. J Appl Cryst 1983; 16:548-58.
-
(1983)
J Appl Cryst
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
11
-
-
25144458667
-
A new progressive-iterative algorithm for multiple structure alignment
-
Lupyan D, Leo-Macias A, Ortiz AR. A new progressive-iterative algorithm for multiple structure alignment. Bioinformatics 2005; 21:3255-63.
-
(2005)
Bioinformatics
, vol.21
, pp. 3255-3263
-
-
Lupyan, D.1
Leo-Macias, A.2
Ortiz, A.R.3
-
12
-
-
2342525085
-
Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography
-
DePristo MA, de Bakker PI, Blundell TL. Heterogeneity and inaccuracy in protein structures solved by X-ray crystallography. Structure 2004; 12:831-8.
-
(2004)
Structure
, vol.12
, pp. 831-838
-
-
DePristo, M.A.1
de Bakker, P.I.2
Blundell, T.L.3
-
13
-
-
33646438365
-
Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A
-
Huang Y, Fang J, Bedford MT, Zhang Y, Xu RM. Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science 2006; 312:748-51.
-
(2006)
Science
, vol.312
, pp. 748-751
-
-
Huang, Y.1
Fang, J.2
Bedford, M.T.3
Zhang, Y.4
Xu, R.M.5
-
14
-
-
33845666681
-
Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair
-
Botuyan MV, Lee J, Ward IM, Kim JE, Thompson JR, Chen J, et al. Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell 2006; 127:1361-73.
-
(2006)
Cell
, vol.127
, pp. 1361-1373
-
-
Botuyan, M.V.1
Lee, J.2
Ward, I.M.3
Kim, J.E.4
Thompson, J.R.5
Chen, J.6
-
15
-
-
0035903443
-
Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3
-
Jacobs SA, Taverna SD, Zhang Y, Briggs SD, Li J, Eissenberg JC, et al. Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3. EMBO J 2001; 20:5232-41.
-
(2001)
EMBO J
, vol.20
, pp. 5232-5241
-
-
Jacobs, S.A.1
Taverna, S.D.2
Zhang, Y.3
Briggs, S.D.4
Li, J.5
Eissenberg, J.C.6
-
17
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson HJ, Wright PE. Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 2005; 6:197-208.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
18
-
-
0036616218
-
The Protein Data Bank
-
Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, Burkhardt K, et al. The Protein Data Bank. Acta Crystallogr D Biol Crystallogr 2002; 58:899-907.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
-
19
-
-
45749092229
-
Effects of posttranslational modifications on the structure and dynamics of histone H3 N-terminal Peptide
-
Liu H, Duan Y. Effects of posttranslational modifications on the structure and dynamics of histone H3 N-terminal Peptide. Biophys J 2008; 94:4579-85.
-
(2008)
Biophys J
, vol.94
, pp. 4579-4585
-
-
Liu, H.1
Duan, Y.2
-
20
-
-
0034634558
-
Acetylation increases the alpha-helical content of the histone tails of the nucleosome
-
Wang X, Moore SC, Laszckzak M, Ausio J. Acetylation increases the alpha-helical content of the histone tails of the nucleosome. J Biol Chem 2000; 275:35013-20.
-
(2000)
J Biol Chem
, vol.275
, pp. 35013-35020
-
-
Wang, X.1
Moore, S.C.2
Laszckzak, M.3
Ausio, J.4
-
21
-
-
36448949026
-
Multivalent engagement of chromatin modifications by linked binding modules
-
Ruthenburg AJ, Li H, Patel DJ, Allis CD. Multivalent engagement of chromatin modifications by linked binding modules. Nat Rev Mol Cell Biol 2007; 8:983-94.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 983-994
-
-
Ruthenburg, A.J.1
Li, H.2
Patel, D.J.3
Allis, C.D.4
-
22
-
-
33645231102
-
Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin
-
Bernstein E, Duncan EM, Masui O, Gil J, Heard E, Allis CD. Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol Cell Biol 2006; 26:2560-9.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 2560-2569
-
-
Bernstein, E.1
Duncan, E.M.2
Masui, O.3
Gil, J.4
Heard, E.5
Allis, C.D.6
-
23
-
-
74049150799
-
Novel motifs distinguish multiple homologues of Polycomb in vertebrates: Expansion and diversification of the epigenetic toolkit
-
Senthilkumar R, Mishra RK. Novel motifs distinguish multiple homologues of Polycomb in vertebrates: expansion and diversification of the epigenetic toolkit. BMC Genomics 2009; 10:549.
-
(2009)
BMC Genomics
, vol.10
, pp. 549
-
-
Senthilkumar, R.1
Mishra, R.K.2
-
24
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang G, Dunbrack RL Jr. PISCES: a protein sequence culling server. Bioinformatics 2003; 19:1589-91.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack Jr., R.L.2
-
25
-
-
60649117152
-
PocketMatch: A new algorithm to compare binding sites in protein structures
-
Yeturu K, Chandra N. PocketMatch: a new algorithm to compare binding sites in protein structures. BMC Bioinformatics 2008; 9:543.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 543
-
-
Yeturu, K.1
Chandra, N.2
-
26
-
-
0028881975
-
SURFNET: A program for visualizing molecular surfaces, cavities and intermolecular interactions
-
Laskowski RA. SURFNET: a program for visualizing molecular surfaces, cavities and intermolecular interactions. J Mol Graph 1995; 13:323-30.
-
(1995)
J Mol Graph
, vol.13
, pp. 323-330
-
-
Laskowski, R.A.1
-
28
-
-
12944249776
-
A discussion of the solution for the best rotation to relate two sets of vectors
-
Kabsch W. A discussion of the solution for the best rotation to relate two sets of vectors. Acta Cryst A 1978; 34:827-8.
-
(1978)
Acta Cryst A
, vol.34
, pp. 827-828
-
-
Kabsch, W.1
-
29
-
-
0034912528
-
Use of surface area computations to describe atom-atom interactions
-
de La Cruz X, Calvo M. Use of surface area computations to describe atom-atom interactions. J Comput Aided Mol Des 2001; 15:521-32.
-
(2001)
J Comput Aided Mol Des
, vol.15
, pp. 521-532
-
-
de la Cruz, X.1
Calvo, M.2
-
30
-
-
0004014257
-
-
Department of Biochemistry and Molecular Biology, University College London
-
Hubbard SJ, Thornton JM. NACCESS. Department of Biochemistry and Molecular Biology, University College London 1993.
-
(1993)
NACCESS
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
31
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22:2577-637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|