Intrinsic protein disorder, amino acid composition, and histone terminal domains

Journal of Biological Chemistry

Volumn 281, Issue 4, 2006, Pages 1853-1856

  Hansen, Jeffrey C ^a   Lu, Xu ^a   Ross, Eric D ^a   Woody, Robert W ^a  

^a Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; AMINO ACIDS; COMPOSITION; MACROMOLECULES; MOLECULAR BIOLOGY; MOLECULAR STRUCTURE;

AMINO ACID COMPOSITION; CHROMATIN; HISTONE TERMINAL DOMAINS; LYSINE RESIDUES; METHYLATION; PROTEIN DISORDER;

PROTEINS;

CORE PROTEIN; HISTONE; HISTONE H1; HISTONE H2A; HISTONE H3; HISTONE H4; LYSINE; AMINO ACID; ISOPROTEIN; PROTEIN;

ACETYLATION; AMINO ACID COMPOSITION; AMINO TERMINAL SEQUENCE; CARBOXY TERMINAL SEQUENCE; CHROMATIN; GENE EXPRESSION; HUMAN; MACROMOLECULE; METHYLATION; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SHORT SURVEY; ANIMAL; BIOCHEMISTRY; BIOLOGICAL MODEL; CELL SURVIVAL; CHEMISTRY; METHODOLOGY; PROTEIN TERTIARY STRUCTURE; REVIEW;

AMINO ACIDS; ANIMALS; BIOCHEMISTRY; CELL SURVIVAL; CHROMATIN; HISTONES; HUMANS; MODELS, BIOLOGICAL; PROTEIN CONFORMATION; PROTEIN ISOFORMS; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 33644865137     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.R500022200     Document Type: Short Survey

References (45)

1. Wolffe, A. (1998) Chromatin: Structure and Function, 3rd Ed., Academic Press, San Diego
2. Hansen, J. C. (2002) Annu. Rev. Biophys. Biomol. Struct. 31, 361-392
3. Dorigo, B., Schalch, T., Bystricky, K., and Richmond, T. J. (2003) J. Mol. Biol. 327, 85-96
4. Gordon, F., Luger, K., and Hansen, J. C. (2005) J. Biol. Chem. 280, 33701-33706
5. Hecht, A., Laroche, T., Strahl-Bolsinger, S., Gasser, S. M., and Grunstein, M. (1995) Cell 80, 583-592
6. An, W., and Roeder, R. G. (2003) J. Biol. Chem. 278, 1504-1510
7. Widlak, P., Kalinowska, M., Parseghian, M. H., Lu, X., Hansen, J. C., and Garrard, W. T. (2005) Biochemistry 44, 7871-7878
8. Ward, J. J., Sodhi, J. S., McGuffin, L. J., Buxton, B. F., and Jones, D. T. (2004) J. Mol. Biol. 337, 635-645
9. Dunker, A. K., Lawson, J. D., Brown, C. J., Wlliams, R. M., Romero, P., Oh, J. S., Oldfield, C. J., Campen, A. M., Ratliff, C. M., Hipps, K. W., Ausio, J., Nissen, M. S., Reeves, R., Kang, C., Kissinger, C. R., Bailey, R. W., Griswold, M. D., Chiu, W., Garner, E. C., and Obradovic, Z. (2001) J. Mol. Graph. Model. 19, 26-59
10. Uversky, V. N. (2002) Protein Sci. 11, 739-756
11. Dunker, A. K., Brown, C. J., Lawson, J. D., Iakoucheva, L. M., and Obradovic, Z. (2002) Biochemistry 41, 6573-6582
12. Uversky, V. N., Gillespie, J. R., and Fink, A. L. (2000) Proteins Struct. Funct. Genet. 41, 415-427
13. Romero, P., Obradovic, Z., Li, X., Garner, E. C., Brown, C. J., and Dunker, A. K. (2001) Proteins Struct. Funct. Genet. 42, 38-48
14. Vucetic, S., Brown, C. J., Dunker, A. K., and Obradovic, Z. (2003) Proteins Struct. Funct. Genet. 52, 573-584
15. Jones, D. T., and Ward, J. J. (2003) Proteins Struct. Funct. Genet. 53, 573-578
16. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-784
17. Kriwacki, R. W., Hengst, L., Tennant, L., Reed, S. I., and Wright, P. E. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 11504-11509
18. Gunasekaran, K., Tsai, C. J., Kumar, S., Zanuy, D., and Nussinov, R. (2003) Trends Biochem. Sci. 28, 81-85
19. Shoemaker, B. A., Portman, J. J., and Wolynes, P. G. (2000) Proc. Natl. Acad. U. S. A. 97, 8868-8873
20. Tompa, P. (2005) FEBS Lett. 579, 3346-3354
21. Dyson, H. J., and Wright, P. E. (2005) Nat. Rev. Mol. Cell Biol. 6, 197-208
22. Fink, A. L. (2005) Curr. Opin. Struct. Biol. 15, 35-41
23. Bustin, M., Catez, F., and Lim, J. H. (2005) Mol. Cell 17, 617-620
24. van Holde, K. E. (1988) Chromatin, Springer-Verlag, New York
25. Allan, J., Mitchell, T., Harborne, N., Bohm, L., and Crane-Robinson, C. (1986) J. Mol. Biol. 187, 591-601
26. Lu, X., and Hansen, J. C. (2004) J. Biol. Chem. 279, 8701-8707
27. Hansen, J. C., Tse, C., and Wolffe, A. P. (1998) Biochemistry 37, 17637-17641
28. Fischle, W., Wang, Y., and Allis, C. D. (2003) Curr. Opin. Cell Biol. 15, 172-183
29. Kurdistani, S. K., and Grunstein, M. (2003) Nat. Rev. Mol. Cell Biol. 4, 276-284
30. Henikoff, S. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5308-5309
31. Luger, K. (2003) Curr. Opin. Genet. Dev. 13, 127-135
32. Baneres, J. L., Martin, A., and Parelló, J. (1997) J. Mol. Biol. 273, 503-508
33. Wang, X., Moore, S. C., Laszckzak, M., and Ausió, J. (2000) J. Biol. Chem. 275, 35013-35020
34. Wickner, R. B., Edskes, H. K., Roberts, B. T., Baxa, U., Pierce, M. M., Ross, E. D., and Brachmann, A. (2004) Genes Dev. 18, 470-485
35. Chien, P., Weissman, J. S., and DePace, A. H. (2004) Annu. Rev. Biochem. 73, 617-656
36. Ross, E. D., Edskes, H. K., Terry, M. J., and Wickner, R. B. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 12825-12830
37. Ross, E. D., Baxa, U., and Wickner, R. B. (2004) Mol. Cell. Biol. 24, 7206-7213
38. Richardson, J. S., and Richardson, D. C. (1988) Science 240, 1648-1652
39. Jacobs, S. A., and Khorisanizadeh, S. (2002) Science 295, 2080-2083
40. Nielsen, P. R., Nietlispach, D., Mott, H. R., Callaghan, J., Bannister, A., Kouzarides, T., Murzin, A. G., Murzina, N. V., and Laue, E. D. (2002) Nature 416, 103-107
41. Fischle, W., Wang, Y., Jacobs, S. A., Kim, Y., Allis, C. D., and Khorisanizadeh, S. (2003) Genes Dev. 17, 1870-1881
42. Dion, M. F., Altschuler, S. J., Wu, L. F., and Rando, O. J. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5501-5506
43. Weathers, E. A., Paulaitis, M. E., Woolf, T. B., and Hoh, J. H. (2004) FEBS Lett. 576, 348-352
44. Ramakrishnan, V., Finch, J. T., Graziano, V., Lee, P. L., and Sweet, R. M. (1993) Nature 362, 219-223
45. Chakravarthy, S., Gundimella, S. K., Caron, C., Perche, P. Y., Pehrson, J. R., Khochbin, S., and Luger, K. (2005) Mol. Cell. Biol. 25, 7616-7624