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Volumn 4, Issue , 2010, Pages

microRNA evolution in a human transcription factor and microRNA regulatory network

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; TRANSCRIPTION FACTOR;

EID: 77953939085     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-4-90     Document Type: Article
Times cited : (41)

References (39)
  • 1
    • 33745239258 scopus 로고    scopus 로고
    • Approaches to microRNA discovery
    • 10.1038/ng1794, 16736019
    • Berezikov E, Cuppen E, Plasterk RH. Approaches to microRNA discovery. Nat Genet 2006, 38(Suppl):S2-7. 10.1038/ng1794, 16736019.
    • (2006) Nat Genet , vol.38 , Issue.SUPPL
    • Berezikov, E.1    Cuppen, E.2    Plasterk, R.H.3
  • 2
    • 54849408182 scopus 로고    scopus 로고
    • An analysis of human microRNA and disease associations
    • doi:10.1371/journal.pone.0003420, 10.1371/journal.pone.0003420, 2559869, 18923704
    • Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, Cui Q. An analysis of human microRNA and disease associations. PLoS ONE 2008, 3(10):e3420. doi:10.1371/journal.pone.0003420, 10.1371/journal.pone.0003420, 2559869, 18923704.
    • (2008) PLoS ONE , vol.3 , Issue.10
    • Lu, M.1    Zhang, Q.2    Deng, M.3    Miao, J.4    Guo, Y.5    Gao, W.6    Cui, Q.7
  • 3
    • 77955420975 scopus 로고    scopus 로고
    • SNP analysis reveals an evolutionary acceleration of the human-specific microRNAs
    • Available from
    • Zhang Q, Lu M, Cui Q. SNP analysis reveals an evolutionary acceleration of the human-specific microRNAs. Nature Precedings 2008, Available from., http://hdlhandlenet/10101/npre200821271
    • (2008) Nature Precedings
    • Zhang, Q.1    Lu, M.2    Cui, Q.3
  • 4
    • 33751520430 scopus 로고    scopus 로고
    • Natural selection on human microRNA binding sites inferred from SNP data
    • 10.1038/ng1910, 17072316
    • Chen K, Rajewsky N. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006, 38(12):1452-1456. 10.1038/ng1910, 17072316.
    • (2006) Nat Genet , vol.38 , Issue.12 , pp. 1452-1456
    • Chen, K.1    Rajewsky, N.2
  • 5
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • 10.1073/pnas.0611347104, 1805605, 17360642
    • Saunders MA, Liang H, Li WH. Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 2007, 104(9):3300-3305. 10.1073/pnas.0611347104, 1805605, 17360642.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.9 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.H.3
  • 6
    • 33646240072 scopus 로고    scopus 로고
    • Direct evolution of genetic robustness in microRNA
    • 10.1073/pnas.0510600103, 1458928, 16608911
    • Borenstein E, Ruppin E. Direct evolution of genetic robustness in microRNA. Proc Natl Acad Sci USA 2006, 103(17):6593-6598. 10.1073/pnas.0510600103, 1458928, 16608911.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.17 , pp. 6593-6598
    • Borenstein, E.1    Ruppin, E.2
  • 7
    • 62349105350 scopus 로고    scopus 로고
    • Congruent evolution of genetic and environmental robustness in micro-RNA
    • 10.1093/molbev/msp008, 19168567
    • Szollosi GJ, Derenyi I. Congruent evolution of genetic and environmental robustness in micro-RNA. Mol Biol Evol 2009, 26(4):867-874. 10.1093/molbev/msp008, 19168567.
    • (2009) Mol Biol Evol , vol.26 , Issue.4 , pp. 867-874
    • Szollosi, G.J.1    Derenyi, I.2
  • 8
    • 56649102410 scopus 로고    scopus 로고
    • Evolution of Arabidopsis MIR genes generates novel microRNA classes
    • 10.1093/nar/gkn670, 2582634, 18842626
    • Vazquez F, Blevins T, Ailhas J, Boller T, Meins F, Jr. Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 2008, 36(20):6429-6438. 10.1093/nar/gkn670, 2582634, 18842626.
    • (2008) Nucleic Acids Res , vol.36 , Issue.20 , pp. 6429-6438
    • Vazquez, F.1    Blevins, T.2    Ailhas, J.3    Boller, T.4    Meins, F.5    Jr6
  • 9
    • 45849126048 scopus 로고    scopus 로고
    • Molecular evolution of a primate-specific microRNA family
    • 10.1093/molbev/msn094, 18417486
    • Zhang R, Wang YQ, Su B. Molecular evolution of a primate-specific microRNA family. Mol Biol Evol 2008, 25(7):1493-1502. 10.1093/molbev/msn094, 18417486.
    • (2008) Mol Biol Evol , vol.25 , Issue.7 , pp. 1493-1502
    • Zhang, R.1    Wang, Y.Q.2    Su, B.3
  • 10
    • 34248196026 scopus 로고    scopus 로고
    • Rapid evolution of an X-linked microRNA cluster in primates
    • 10.1101/gr.6146507, 1855169, 17416744
    • Zhang R, Peng Y, Wang W, Su B. Rapid evolution of an X-linked microRNA cluster in primates. Genome Res 2007, 17(5):612-617. 10.1101/gr.6146507, 1855169, 17416744.
    • (2007) Genome Res , vol.17 , Issue.5 , pp. 612-617
    • Zhang, R.1    Peng, Y.2    Wang, W.3    Su, B.4
  • 12
    • 34250729886 scopus 로고    scopus 로고
    • Origin and evolution of human microRNAs from transposable elements
    • 10.1534/genetics.107.072553, 1894593, 17435244
    • Piriyapongsa J, Marino-Ramirez L, Jordan IK. Origin and evolution of human microRNAs from transposable elements. Genetics 2007, 176(2):1323-1337. 10.1534/genetics.107.072553, 1894593, 17435244.
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1323-1337
    • Piriyapongsa, J.1    Marino-Ramirez, L.2    Jordan, I.K.3
  • 13
    • 33645509923 scopus 로고    scopus 로고
    • Evolution of Arabidopsis microRNA families through duplication events
    • 10.1101/gr.4680506, 1457037, 16520461
    • Maher C, Stein L, Ware D. Evolution of Arabidopsis microRNA families through duplication events. Genome Res 2006, 16(4):510-519. 10.1101/gr.4680506, 1457037, 16520461.
    • (2006) Genome Res , vol.16 , Issue.4 , pp. 510-519
    • Maher, C.1    Stein, L.2    Ware, D.3
  • 14
    • 27744477538 scopus 로고    scopus 로고
    • Camels and zebrafish, viruses and cancer: a microRNA update
    • Spec No. 2, 10.1093/hmg/ddi271, 16244316
    • Berezikov E, Plasterk RH. Camels and zebrafish, viruses and cancer: a microRNA update. Hum Mol Genet 2005, 14:R183-190. Spec No. 2, 10.1093/hmg/ddi271, 16244316.
    • (2005) Hum Mol Genet , vol.14
    • Berezikov, E.1    Plasterk, R.H.2
  • 15
    • 34447640714 scopus 로고    scopus 로고
    • MicroRNA regulation and interspecific variation of gene expression
    • 10.1016/j.tig.2007.04.003, 17482307
    • Cui Q, Yu Z, Purisima EO, Wang E. MicroRNA regulation and interspecific variation of gene expression. Trends Genet 2007, 23(8):372-375. 10.1016/j.tig.2007.04.003, 17482307.
    • (2007) Trends Genet , vol.23 , Issue.8 , pp. 372-375
    • Cui, Q.1    Yu, Z.2    Purisima, E.O.3    Wang, E.4
  • 16
    • 66249117657 scopus 로고    scopus 로고
    • Lowly expressed human microRNA genes evolve rapidly
    • 10.1093/molbev/msp053, 2727378, 19299536
    • Liang H, Li WH. Lowly expressed human microRNA genes evolve rapidly. Mol Biol Evol 2009, 26(6):1195-1198. 10.1093/molbev/msp053, 2727378, 19299536.
    • (2009) Mol Biol Evol , vol.26 , Issue.6 , pp. 1195-1198
    • Liang, H.1    Li, W.H.2
  • 17
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • 2775598, 19755563
    • de Wit E, Linsen SE, Cuppen E, Berezikov E. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 2009, 2775598, 19755563.
    • (2009) Genome Res
    • de Wit, E.1    Linsen, S.E.2    Cuppen, E.3    Berezikov, E.4
  • 18
    • 67650601963 scopus 로고    scopus 로고
    • Evolution of transcriptional regulatory circuits in bacteria
    • 10.1016/j.cell.2009.07.002, 19632175
    • Perez JC, Groisman EA. Evolution of transcriptional regulatory circuits in bacteria. Cell 2009, 138(2):233-244. 10.1016/j.cell.2009.07.002, 19632175.
    • (2009) Cell , vol.138 , Issue.2 , pp. 233-244
    • Perez, J.C.1    Groisman, E.A.2
  • 19
    • 34547941361 scopus 로고    scopus 로고
    • MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb
    • 10.1016/j.cell.2007.07.021, 17923094
    • Xiao C, Calado DP, Galler G, Thai TH, Patterson HC, Wang J, Rajewsky N, Bender TP, Rajewsky K. MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell 2007, 131(1):146-159. 10.1016/j.cell.2007.07.021, 17923094.
    • (2007) Cell , vol.131 , Issue.1 , pp. 146-159
    • Xiao, C.1    Calado, D.P.2    Galler, G.3    Thai, T.H.4    Patterson, H.C.5    Wang, J.6    Rajewsky, N.7    Bender, T.P.8    Rajewsky, K.9
  • 20
    • 33845315897 scopus 로고    scopus 로고
    • MicroRNAs preferentially target the genes with high transcriptional regulation complexity
    • 10.1016/j.bbrc.2006.11.080, 17141185
    • Cui Q, Yu Z, Pan Y, Purisima EO, Wang E. MicroRNAs preferentially target the genes with high transcriptional regulation complexity. Biochem Biophys Res Commun 2007, 352(3):733-738. 10.1016/j.bbrc.2006.11.080, 17141185.
    • (2007) Biochem Biophys Res Commun , vol.352 , Issue.3 , pp. 733-738
    • Cui, Q.1    Yu, Z.2    Pan, Y.3    Purisima, E.O.4    Wang, E.5
  • 21
    • 33846045953 scopus 로고    scopus 로고
    • Principles of microRNA regulation of a human cellular signaling network
    • 10.1038/msb4100089, 1681519, 16969338
    • Cui Q, Yu Z, Purisima EO, Wang E. Principles of microRNA regulation of a human cellular signaling network. Mol Syst Biol 2006, 2:46. 10.1038/msb4100089, 1681519, 16969338.
    • (2006) Mol Syst Biol , vol.2 , pp. 46
    • Cui, Q.1    Yu, Z.2    Purisima, E.O.3    Wang, E.4
  • 22
    • 69249127529 scopus 로고    scopus 로고
    • Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
    • 10.1038/msb.2009.52, 2736650, 19690563
    • Jothi R, Balaji S, Wuster A, Grochow JA, Gsponer J, Przytycka TM, Aravind L, Babu MM. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 2009, 5:294. 10.1038/msb.2009.52, 2736650, 19690563.
    • (2009) Mol Syst Biol , vol.5 , pp. 294
    • Jothi, R.1    Balaji, S.2    Wuster, A.3    Grochow, J.A.4    Gsponer, J.5    Przytycka, T.M.6    Aravind, L.7    Babu, M.M.8
  • 23
    • 33646113855 scopus 로고    scopus 로고
    • Evolutionary dynamics of prokaryotic transcriptional regulatory networks
    • 10.1016/j.jmb.2006.02.019, 16530225
    • Madan Babu M, Teichmann SA, Aravind L. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J Mol Biol 2006, 358(2):614-633. 10.1016/j.jmb.2006.02.019, 16530225.
    • (2006) J Mol Biol , vol.358 , Issue.2 , pp. 614-633
    • Madan Babu, M.1    Teichmann, S.A.2    Aravind, L.3
  • 24
    • 0037177560 scopus 로고    scopus 로고
    • Evolutionary rate in the protein interaction network
    • 10.1126/science.1068696, 11976460
    • Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. Evolutionary rate in the protein interaction network. Science 2002, 296(5568):750-752. 10.1126/science.1068696, 11976460.
    • (2002) Science , vol.296 , Issue.5568 , pp. 750-752
    • Fraser, H.B.1    Hirsh, A.E.2    Steinmetz, L.M.3    Scharfe, C.4    Feldman, M.W.5
  • 25
    • 61849118567 scopus 로고    scopus 로고
    • Protein evolution on a human signaling network
    • 10.1186/1752-0509-3-21, 2649034, 19226461
    • Cui Q, Purisima EO, Wang E. Protein evolution on a human signaling network. BMC Syst Biol 2009, 3:21. 10.1186/1752-0509-3-21, 2649034, 19226461.
    • (2009) BMC Syst Biol , vol.3 , pp. 21
    • Cui, Q.1    Purisima, E.O.2    Wang, E.3
  • 26
    • 0036303685 scopus 로고    scopus 로고
    • Evolution of enzymes in metabolism: a network perspective
    • 10.1016/S0022-2836(02)00546-6, 12095253
    • Alves R, Chaleil RA, Sternberg MJ. Evolution of enzymes in metabolism: a network perspective. J Mol Biol 2002, 320(4):751-770. 10.1016/S0022-2836(02)00546-6, 12095253.
    • (2002) J Mol Biol , vol.320 , Issue.4 , pp. 751-770
    • Alves, R.1    Chaleil, R.A.2    Sternberg, M.J.3
  • 29
    • 72949090161 scopus 로고    scopus 로고
    • Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression
    • 19593471, 10.1039/b905382d
    • Fu C, Li J, Wang E. Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression. Mol Biosyst 2009, 5(12):1809-1816. 19593471, 10.1039/b905382d.
    • (2009) Mol Biosyst , vol.5 , Issue.12 , pp. 1809-1816
    • Fu, C.1    Li, J.2    Wang, E.3
  • 30
    • 33645222401 scopus 로고    scopus 로고
    • Rules for biological regulation based on error minimization
    • 10.1073/pnas.0506610103, 1389706, 16537475
    • Shinar G, Dekel E, Tlusty T, Alon U. Rules for biological regulation based on error minimization. Proc Natl Acad Sci USA 2006, 103(11):3999-4004. 10.1073/pnas.0506610103, 1389706, 16537475.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.11 , pp. 3999-4004
    • Shinar, G.1    Dekel, E.2    Tlusty, T.3    Alon, U.4
  • 31
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • 10.1038/nrg1838, 16619049
    • Pal C, Papp B, Lercher MJ. An integrated view of protein evolution. Nat Rev Genet 2006, 7(5):337-348. 10.1038/nrg1838, 16619049.
    • (2006) Nat Rev Genet , vol.7 , Issue.5 , pp. 337-348
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 32
    • 66049153398 scopus 로고    scopus 로고
    • Evolution under canalization and the dual roles of microRNAs: a hypothesis
    • 10.1101/gr.084640.108, 19411598
    • Wu CI, Shen Y, Tang T. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Res 2009, 19(5):734-743. 10.1101/gr.084640.108, 19411598.
    • (2009) Genome Res , vol.19 , Issue.5 , pp. 734-743
    • Wu, C.I.1    Shen, Y.2    Tang, T.3
  • 33
    • 43249098417 scopus 로고    scopus 로고
    • Recurrent design patterns in the feedback regulation of the mammalian signalling network
    • 10.1038/msb.2008.29, 2424294, 18463614
    • Legewie S, Herzel H, Westerhoff HV, Bluthgen N. Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol Syst Biol 2008, 4:190. 10.1038/msb.2008.29, 2424294, 18463614.
    • (2008) Mol Syst Biol , vol.4 , pp. 190
    • Legewie, S.1    Herzel, H.2    Westerhoff, H.V.3    Bluthgen, N.4
  • 34
    • 36849068465 scopus 로고    scopus 로고
    • Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy
    • 10.1038/msb4100195, 2174628, 18059446
    • Amit I, Wides R, Yarden Y. Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy. Mol Syst Biol 2007, 3:151. 10.1038/msb4100195, 2174628, 18059446.
    • (2007) Mol Syst Biol , vol.3 , pp. 151
    • Amit, I.1    Wides, R.2    Yarden, Y.3
  • 35
    • 27844541328 scopus 로고    scopus 로고
    • Modeling T cell antigen discrimination based on feedback control of digital ERK responses
    • 10.1371/journal.pbio.0030356, 1262625,1262625, 16231973
    • Altan-Bonnet G, Germain RN. Modeling T cell antigen discrimination based on feedback control of digital ERK responses. PLoS Biol 2005, 3(11):e356. 10.1371/journal.pbio.0030356, 1262625,1262625, 16231973.
    • (2005) PLoS Biol , vol.3 , Issue.11
    • Altan-Bonnet, G.1    Germain, R.N.2
  • 36
    • 58149203235 scopus 로고    scopus 로고
    • The database of experimentally supported targets: a functional update of TarBase
    • 10.1093/nar/gkn809, 2686456, 18957447
    • Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res 2009, 37(Database issue):D155-158. 10.1093/nar/gkn809, 2686456, 18957447.
    • (2009) Nucleic Acids Res , vol.37
    • Papadopoulos, G.L.1    Reczko, M.2    Simossis, V.A.3    Sethupathy, P.4    Hatzigeorgiou, A.G.5
  • 37
    • 75549092303 scopus 로고    scopus 로고
    • TransmiR: a transcription factor-microRNA regulation database
    • 10.1093/nar/gkp803, 2808874, 19786497
    • Wang J, Lu M, Qiu C, Cui Q. TransmiR: a transcription factor-microRNA regulation database. Nucleic Acids Res 2010, 38(Database issue):D119-122. 10.1093/nar/gkp803, 2808874, 19786497.
    • (2010) Nucleic Acids Res , vol.38
    • Wang, J.1    Lu, M.2    Qiu, C.3    Cui, Q.4
  • 38
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • 10.1038/ng881, 11967538
    • Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 2002, 31(1):64-68. 10.1038/ng881, 11967538.
    • (2002) Nat Genet , vol.31 , Issue.1 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, U.4
  • 39
    • 43149112799 scopus 로고    scopus 로고
    • Contact density affects protein evolutionary rate from bacteria to animals
    • 10.1007/s00239-008-9094-4, 18379715
    • Zhou T, Drummond DA, Wilke CO. Contact density affects protein evolutionary rate from bacteria to animals. J Mol Evol 2008, 66(4):395-404. 10.1007/s00239-008-9094-4, 18379715.
    • (2008) J Mol Evol , vol.66 , Issue.4 , pp. 395-404
    • Zhou, T.1    Drummond, D.A.2    Wilke, C.O.3


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