-
1
-
-
33745239258
-
Approaches to microRNA discovery
-
10.1038/ng1794, 16736019
-
Berezikov E, Cuppen E, Plasterk RH. Approaches to microRNA discovery. Nat Genet 2006, 38(Suppl):S2-7. 10.1038/ng1794, 16736019.
-
(2006)
Nat Genet
, vol.38
, Issue.SUPPL
-
-
Berezikov, E.1
Cuppen, E.2
Plasterk, R.H.3
-
2
-
-
54849408182
-
An analysis of human microRNA and disease associations
-
doi:10.1371/journal.pone.0003420, 10.1371/journal.pone.0003420, 2559869, 18923704
-
Lu M, Zhang Q, Deng M, Miao J, Guo Y, Gao W, Cui Q. An analysis of human microRNA and disease associations. PLoS ONE 2008, 3(10):e3420. doi:10.1371/journal.pone.0003420, 10.1371/journal.pone.0003420, 2559869, 18923704.
-
(2008)
PLoS ONE
, vol.3
, Issue.10
-
-
Lu, M.1
Zhang, Q.2
Deng, M.3
Miao, J.4
Guo, Y.5
Gao, W.6
Cui, Q.7
-
3
-
-
77955420975
-
SNP analysis reveals an evolutionary acceleration of the human-specific microRNAs
-
Available from
-
Zhang Q, Lu M, Cui Q. SNP analysis reveals an evolutionary acceleration of the human-specific microRNAs. Nature Precedings 2008, Available from., http://hdlhandlenet/10101/npre200821271
-
(2008)
Nature Precedings
-
-
Zhang, Q.1
Lu, M.2
Cui, Q.3
-
4
-
-
33751520430
-
Natural selection on human microRNA binding sites inferred from SNP data
-
10.1038/ng1910, 17072316
-
Chen K, Rajewsky N. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006, 38(12):1452-1456. 10.1038/ng1910, 17072316.
-
(2006)
Nat Genet
, vol.38
, Issue.12
, pp. 1452-1456
-
-
Chen, K.1
Rajewsky, N.2
-
5
-
-
33847665108
-
Human polymorphism at microRNAs and microRNA target sites
-
10.1073/pnas.0611347104, 1805605, 17360642
-
Saunders MA, Liang H, Li WH. Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 2007, 104(9):3300-3305. 10.1073/pnas.0611347104, 1805605, 17360642.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.9
, pp. 3300-3305
-
-
Saunders, M.A.1
Liang, H.2
Li, W.H.3
-
6
-
-
33646240072
-
Direct evolution of genetic robustness in microRNA
-
10.1073/pnas.0510600103, 1458928, 16608911
-
Borenstein E, Ruppin E. Direct evolution of genetic robustness in microRNA. Proc Natl Acad Sci USA 2006, 103(17):6593-6598. 10.1073/pnas.0510600103, 1458928, 16608911.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.17
, pp. 6593-6598
-
-
Borenstein, E.1
Ruppin, E.2
-
7
-
-
62349105350
-
Congruent evolution of genetic and environmental robustness in micro-RNA
-
10.1093/molbev/msp008, 19168567
-
Szollosi GJ, Derenyi I. Congruent evolution of genetic and environmental robustness in micro-RNA. Mol Biol Evol 2009, 26(4):867-874. 10.1093/molbev/msp008, 19168567.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.4
, pp. 867-874
-
-
Szollosi, G.J.1
Derenyi, I.2
-
8
-
-
56649102410
-
Evolution of Arabidopsis MIR genes generates novel microRNA classes
-
10.1093/nar/gkn670, 2582634, 18842626
-
Vazquez F, Blevins T, Ailhas J, Boller T, Meins F, Jr. Evolution of Arabidopsis MIR genes generates novel microRNA classes. Nucleic Acids Res 2008, 36(20):6429-6438. 10.1093/nar/gkn670, 2582634, 18842626.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.20
, pp. 6429-6438
-
-
Vazquez, F.1
Blevins, T.2
Ailhas, J.3
Boller, T.4
Meins, F.5
Jr6
-
9
-
-
45849126048
-
Molecular evolution of a primate-specific microRNA family
-
10.1093/molbev/msn094, 18417486
-
Zhang R, Wang YQ, Su B. Molecular evolution of a primate-specific microRNA family. Mol Biol Evol 2008, 25(7):1493-1502. 10.1093/molbev/msn094, 18417486.
-
(2008)
Mol Biol Evol
, vol.25
, Issue.7
, pp. 1493-1502
-
-
Zhang, R.1
Wang, Y.Q.2
Su, B.3
-
10
-
-
34248196026
-
Rapid evolution of an X-linked microRNA cluster in primates
-
10.1101/gr.6146507, 1855169, 17416744
-
Zhang R, Peng Y, Wang W, Su B. Rapid evolution of an X-linked microRNA cluster in primates. Genome Res 2007, 17(5):612-617. 10.1101/gr.6146507, 1855169, 17416744.
-
(2007)
Genome Res
, vol.17
, Issue.5
, pp. 612-617
-
-
Zhang, R.1
Peng, Y.2
Wang, W.3
Su, B.4
-
11
-
-
39749083331
-
The birth and death of microRNA genes in Drosophila
-
10.1038/ng.73, 18278047
-
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nat Genet 2008, 40(3):351-355. 10.1038/ng.73, 18278047.
-
(2008)
Nat Genet
, vol.40
, Issue.3
, pp. 351-355
-
-
Lu, J.1
Shen, Y.2
Wu, Q.3
Kumar, S.4
He, B.5
Shi, S.6
Carthew, R.W.7
Wang, S.M.8
Wu, C.I.9
-
12
-
-
34250729886
-
Origin and evolution of human microRNAs from transposable elements
-
10.1534/genetics.107.072553, 1894593, 17435244
-
Piriyapongsa J, Marino-Ramirez L, Jordan IK. Origin and evolution of human microRNAs from transposable elements. Genetics 2007, 176(2):1323-1337. 10.1534/genetics.107.072553, 1894593, 17435244.
-
(2007)
Genetics
, vol.176
, Issue.2
, pp. 1323-1337
-
-
Piriyapongsa, J.1
Marino-Ramirez, L.2
Jordan, I.K.3
-
13
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
10.1101/gr.4680506, 1457037, 16520461
-
Maher C, Stein L, Ware D. Evolution of Arabidopsis microRNA families through duplication events. Genome Res 2006, 16(4):510-519. 10.1101/gr.4680506, 1457037, 16520461.
-
(2006)
Genome Res
, vol.16
, Issue.4
, pp. 510-519
-
-
Maher, C.1
Stein, L.2
Ware, D.3
-
14
-
-
27744477538
-
Camels and zebrafish, viruses and cancer: a microRNA update
-
Spec No. 2, 10.1093/hmg/ddi271, 16244316
-
Berezikov E, Plasterk RH. Camels and zebrafish, viruses and cancer: a microRNA update. Hum Mol Genet 2005, 14:R183-190. Spec No. 2, 10.1093/hmg/ddi271, 16244316.
-
(2005)
Hum Mol Genet
, vol.14
-
-
Berezikov, E.1
Plasterk, R.H.2
-
15
-
-
34447640714
-
MicroRNA regulation and interspecific variation of gene expression
-
10.1016/j.tig.2007.04.003, 17482307
-
Cui Q, Yu Z, Purisima EO, Wang E. MicroRNA regulation and interspecific variation of gene expression. Trends Genet 2007, 23(8):372-375. 10.1016/j.tig.2007.04.003, 17482307.
-
(2007)
Trends Genet
, vol.23
, Issue.8
, pp. 372-375
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
16
-
-
66249117657
-
Lowly expressed human microRNA genes evolve rapidly
-
10.1093/molbev/msp053, 2727378, 19299536
-
Liang H, Li WH. Lowly expressed human microRNA genes evolve rapidly. Mol Biol Evol 2009, 26(6):1195-1198. 10.1093/molbev/msp053, 2727378, 19299536.
-
(2009)
Mol Biol Evol
, vol.26
, Issue.6
, pp. 1195-1198
-
-
Liang, H.1
Li, W.H.2
-
17
-
-
70350705948
-
Repertoire and evolution of miRNA genes in four divergent nematode species
-
2775598, 19755563
-
de Wit E, Linsen SE, Cuppen E, Berezikov E. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 2009, 2775598, 19755563.
-
(2009)
Genome Res
-
-
de Wit, E.1
Linsen, S.E.2
Cuppen, E.3
Berezikov, E.4
-
18
-
-
67650601963
-
Evolution of transcriptional regulatory circuits in bacteria
-
10.1016/j.cell.2009.07.002, 19632175
-
Perez JC, Groisman EA. Evolution of transcriptional regulatory circuits in bacteria. Cell 2009, 138(2):233-244. 10.1016/j.cell.2009.07.002, 19632175.
-
(2009)
Cell
, vol.138
, Issue.2
, pp. 233-244
-
-
Perez, J.C.1
Groisman, E.A.2
-
19
-
-
34547941361
-
MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb
-
10.1016/j.cell.2007.07.021, 17923094
-
Xiao C, Calado DP, Galler G, Thai TH, Patterson HC, Wang J, Rajewsky N, Bender TP, Rajewsky K. MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell 2007, 131(1):146-159. 10.1016/j.cell.2007.07.021, 17923094.
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 146-159
-
-
Xiao, C.1
Calado, D.P.2
Galler, G.3
Thai, T.H.4
Patterson, H.C.5
Wang, J.6
Rajewsky, N.7
Bender, T.P.8
Rajewsky, K.9
-
20
-
-
33845315897
-
MicroRNAs preferentially target the genes with high transcriptional regulation complexity
-
10.1016/j.bbrc.2006.11.080, 17141185
-
Cui Q, Yu Z, Pan Y, Purisima EO, Wang E. MicroRNAs preferentially target the genes with high transcriptional regulation complexity. Biochem Biophys Res Commun 2007, 352(3):733-738. 10.1016/j.bbrc.2006.11.080, 17141185.
-
(2007)
Biochem Biophys Res Commun
, vol.352
, Issue.3
, pp. 733-738
-
-
Cui, Q.1
Yu, Z.2
Pan, Y.3
Purisima, E.O.4
Wang, E.5
-
21
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
10.1038/msb4100089, 1681519, 16969338
-
Cui Q, Yu Z, Purisima EO, Wang E. Principles of microRNA regulation of a human cellular signaling network. Mol Syst Biol 2006, 2:46. 10.1038/msb4100089, 1681519, 16969338.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
22
-
-
69249127529
-
Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
-
10.1038/msb.2009.52, 2736650, 19690563
-
Jothi R, Balaji S, Wuster A, Grochow JA, Gsponer J, Przytycka TM, Aravind L, Babu MM. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 2009, 5:294. 10.1038/msb.2009.52, 2736650, 19690563.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 294
-
-
Jothi, R.1
Balaji, S.2
Wuster, A.3
Grochow, J.A.4
Gsponer, J.5
Przytycka, T.M.6
Aravind, L.7
Babu, M.M.8
-
23
-
-
33646113855
-
Evolutionary dynamics of prokaryotic transcriptional regulatory networks
-
10.1016/j.jmb.2006.02.019, 16530225
-
Madan Babu M, Teichmann SA, Aravind L. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. J Mol Biol 2006, 358(2):614-633. 10.1016/j.jmb.2006.02.019, 16530225.
-
(2006)
J Mol Biol
, vol.358
, Issue.2
, pp. 614-633
-
-
Madan Babu, M.1
Teichmann, S.A.2
Aravind, L.3
-
24
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
10.1126/science.1068696, 11976460
-
Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. Evolutionary rate in the protein interaction network. Science 2002, 296(5568):750-752. 10.1126/science.1068696, 11976460.
-
(2002)
Science
, vol.296
, Issue.5568
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
25
-
-
61849118567
-
Protein evolution on a human signaling network
-
10.1186/1752-0509-3-21, 2649034, 19226461
-
Cui Q, Purisima EO, Wang E. Protein evolution on a human signaling network. BMC Syst Biol 2009, 3:21. 10.1186/1752-0509-3-21, 2649034, 19226461.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 21
-
-
Cui, Q.1
Purisima, E.O.2
Wang, E.3
-
26
-
-
0036303685
-
Evolution of enzymes in metabolism: a network perspective
-
10.1016/S0022-2836(02)00546-6, 12095253
-
Alves R, Chaleil RA, Sternberg MJ. Evolution of enzymes in metabolism: a network perspective. J Mol Biol 2002, 320(4):751-770. 10.1016/S0022-2836(02)00546-6, 12095253.
-
(2002)
J Mol Biol
, vol.320
, Issue.4
, pp. 751-770
-
-
Alves, R.1
Chaleil, R.A.2
Sternberg, M.J.3
-
27
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
10.1093/nar/gkh103, 308837, 14681465
-
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Res 2004, 32(Database issue):D493-496. 10.1093/nar/gkh103, 308837, 14681465.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
Kent, W.J.7
-
28
-
-
37349068664
-
A map of human cancer signaling
-
10.1038/msb4100200, 2174632, 18091723
-
Cui Q, Ma Y, Jaramillo M, Bari H, Awan A, Yang S, Zhang S, Liu L, Lu M, O'Connor-McCourt M, et al. A map of human cancer signaling. Mol Syst Biol 2007, 3:152. 10.1038/msb4100200, 2174632, 18091723.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 152
-
-
Cui, Q.1
Ma, Y.2
Jaramillo, M.3
Bari, H.4
Awan, A.5
Yang, S.6
Zhang, S.7
Liu, L.8
Lu, M.9
O'Connor-McCourt, M.10
-
29
-
-
72949090161
-
Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression
-
19593471, 10.1039/b905382d
-
Fu C, Li J, Wang E. Signaling network analysis of ubiquitin-mediated proteins suggests correlations between the 26S proteasome and tumor progression. Mol Biosyst 2009, 5(12):1809-1816. 19593471, 10.1039/b905382d.
-
(2009)
Mol Biosyst
, vol.5
, Issue.12
, pp. 1809-1816
-
-
Fu, C.1
Li, J.2
Wang, E.3
-
30
-
-
33645222401
-
Rules for biological regulation based on error minimization
-
10.1073/pnas.0506610103, 1389706, 16537475
-
Shinar G, Dekel E, Tlusty T, Alon U. Rules for biological regulation based on error minimization. Proc Natl Acad Sci USA 2006, 103(11):3999-4004. 10.1073/pnas.0506610103, 1389706, 16537475.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.11
, pp. 3999-4004
-
-
Shinar, G.1
Dekel, E.2
Tlusty, T.3
Alon, U.4
-
31
-
-
33646182934
-
An integrated view of protein evolution
-
10.1038/nrg1838, 16619049
-
Pal C, Papp B, Lercher MJ. An integrated view of protein evolution. Nat Rev Genet 2006, 7(5):337-348. 10.1038/nrg1838, 16619049.
-
(2006)
Nat Rev Genet
, vol.7
, Issue.5
, pp. 337-348
-
-
Pal, C.1
Papp, B.2
Lercher, M.J.3
-
32
-
-
66049153398
-
Evolution under canalization and the dual roles of microRNAs: a hypothesis
-
10.1101/gr.084640.108, 19411598
-
Wu CI, Shen Y, Tang T. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Res 2009, 19(5):734-743. 10.1101/gr.084640.108, 19411598.
-
(2009)
Genome Res
, vol.19
, Issue.5
, pp. 734-743
-
-
Wu, C.I.1
Shen, Y.2
Tang, T.3
-
33
-
-
43249098417
-
Recurrent design patterns in the feedback regulation of the mammalian signalling network
-
10.1038/msb.2008.29, 2424294, 18463614
-
Legewie S, Herzel H, Westerhoff HV, Bluthgen N. Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol Syst Biol 2008, 4:190. 10.1038/msb.2008.29, 2424294, 18463614.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 190
-
-
Legewie, S.1
Herzel, H.2
Westerhoff, H.V.3
Bluthgen, N.4
-
34
-
-
36849068465
-
Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy
-
10.1038/msb4100195, 2174628, 18059446
-
Amit I, Wides R, Yarden Y. Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy. Mol Syst Biol 2007, 3:151. 10.1038/msb4100195, 2174628, 18059446.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 151
-
-
Amit, I.1
Wides, R.2
Yarden, Y.3
-
35
-
-
27844541328
-
Modeling T cell antigen discrimination based on feedback control of digital ERK responses
-
10.1371/journal.pbio.0030356, 1262625,1262625, 16231973
-
Altan-Bonnet G, Germain RN. Modeling T cell antigen discrimination based on feedback control of digital ERK responses. PLoS Biol 2005, 3(11):e356. 10.1371/journal.pbio.0030356, 1262625,1262625, 16231973.
-
(2005)
PLoS Biol
, vol.3
, Issue.11
-
-
Altan-Bonnet, G.1
Germain, R.N.2
-
36
-
-
58149203235
-
The database of experimentally supported targets: a functional update of TarBase
-
10.1093/nar/gkn809, 2686456, 18957447
-
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG. The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res 2009, 37(Database issue):D155-158. 10.1093/nar/gkn809, 2686456, 18957447.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
37
-
-
75549092303
-
TransmiR: a transcription factor-microRNA regulation database
-
10.1093/nar/gkp803, 2808874, 19786497
-
Wang J, Lu M, Qiu C, Cui Q. TransmiR: a transcription factor-microRNA regulation database. Nucleic Acids Res 2010, 38(Database issue):D119-122. 10.1093/nar/gkp803, 2808874, 19786497.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Wang, J.1
Lu, M.2
Qiu, C.3
Cui, Q.4
-
38
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
10.1038/ng881, 11967538
-
Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 2002, 31(1):64-68. 10.1038/ng881, 11967538.
-
(2002)
Nat Genet
, vol.31
, Issue.1
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
39
-
-
43149112799
-
Contact density affects protein evolutionary rate from bacteria to animals
-
10.1007/s00239-008-9094-4, 18379715
-
Zhou T, Drummond DA, Wilke CO. Contact density affects protein evolutionary rate from bacteria to animals. J Mol Evol 2008, 66(4):395-404. 10.1007/s00239-008-9094-4, 18379715.
-
(2008)
J Mol Evol
, vol.66
, Issue.4
, pp. 395-404
-
-
Zhou, T.1
Drummond, D.A.2
Wilke, C.O.3
|