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Volumn 147, Issue 2, 2010, Pages 53-57

Indel segregating within introns in the chicken genome are positively correlated with the recombination rates

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOSOME; CHICKEN; CORRELATION ANALYSIS; GENE MAPPING; GENE SEQUENCE; GENETIC RECOMBINATION; GENOME; INDEL MUTATION; INTERGENERIC HYBRIDIZATION; INTRON; NONHUMAN; POINT MUTATION;

EID: 77953766753     PISSN: 00180661     EISSN: 16015223     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2009.2141.x     Document Type: Article
Times cited : (7)

References (29)
  • 1
    • 33750514832 scopus 로고    scopus 로고
    • Exceptionally high levels of recombination across the honey bee genome
    • Beye M, Gattermeier I, Hasselmann M. Exceptionally high levels of recombination across the honey bee genome. Genome Res. 2006, 16:1339-1344.
    • (2006) Genome Res. , vol.16 , pp. 1339-1344
    • Beye, M.1    Gattermeier, I.2    Hasselmann, M.3
  • 2
    • 0035140685 scopus 로고    scopus 로고
    • Genomic gigantism: DNA loss is slow in mountain grasshoppers
    • Bensasson D, Petrov D A, Zhang D X. Genomic gigantism: DNA loss is slow in mountain grasshoppers. Mol. Biol. Evol. 2001, 18:246-253.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 246-253
    • Bensasson, D.1    Petrov, D.A.2    Zhang, D.X.3
  • 3
    • 12344307147 scopus 로고    scopus 로고
    • Comprehensive identification and characterization of diallelic insertion deletion polymorphisms in 330 human candidate genes
    • Bhangale T R, Rieder M J, Livingston R J. Comprehensive identification and characterization of diallelic insertion deletion polymorphisms in 330 human candidate genes. Hum. Mol. Genet. 2005, 14:59-69.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 59-69
    • Bhangale, T.R.1    Rieder, M.J.2    Livingston, R.J.3
  • 4
    • 34547094391 scopus 로고    scopus 로고
    • The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) genome: a high frequency of deletions in tandem duplicates
    • Brandström M, Ellegren H. The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) genome: a high frequency of deletions in tandem duplicates. Genetics 2007, 176:1691-1701.
    • (2007) Genetics , vol.176 , pp. 1691-1701
    • Brandström, M.1    Ellegren, H.2
  • 5
    • 0037108783 scopus 로고    scopus 로고
    • Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels
    • Britten R J. Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels. Proc. Natl Acad. Sci. USA 2002, 99:13633-13635.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 13633-13635
    • Britten, R.J.1
  • 6
    • 0345668476 scopus 로고    scopus 로고
    • Majority of divergence between closely related DNA samples is due to indels
    • Britten R J, Rowen L, Williams J. Majority of divergence between closely related DNA samples is due to indels. Proc. Natl Acad. Sci. USA 2003, 100:4661-4665.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 4661-4665
    • Britten, R.J.1    Rowen, L.2    Williams, J.3
  • 7
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • Chimpanzee Sequencing and Analysis Consortium
    • Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 2005, 437:69-87. Chimpanzee Sequencing and Analysis Consortium
    • (2005) Nature , vol.437 , pp. 69-87
  • 8
    • 0033767383 scopus 로고    scopus 로고
    • The correlation between intron length and recombination in Drosophila: dynamic equilibrium between mutational and selective forces
    • Comeron J M, Kreitman M. The correlation between intron length and recombination in Drosophila: dynamic equilibrium between mutational and selective forces. Genetics 2000, 156:1175-1190.
    • (2000) Genetics , vol.156 , pp. 1175-1190
    • Comeron, J.M.1    Kreitman, M.2
  • 9
    • 37349093019 scopus 로고    scopus 로고
    • Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin
    • Fontanillas P, Hartl D L, Reuter M. Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLoS Genet. 2007, 3:e210.
    • (2007) PLoS Genet. , vol.3
    • Fontanillas, P.1    Hartl, D.L.2    Reuter, M.3
  • 10
    • 0033962741 scopus 로고    scopus 로고
    • A consensus linkage map of the chicken genome
    • Groenen M A, Cheng H H, Bumatead N. A consensus linkage map of the chicken genome. Genome Res. 2000, 10:137-147.
    • (2000) Genome Res. , vol.10 , pp. 137-147
    • Groenen, M.A.1    Cheng, H.H.2    Bumatead, N.3
  • 11
    • 61849153558 scopus 로고    scopus 로고
    • A highdensity SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
    • Groenen M A, Wahlberg P, Foglio M. A highdensity SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res. 2009, 19:510-519.
    • (2009) Genome Res. , vol.19 , pp. 510-519
    • Groenen, M.A.1    Wahlberg, P.2    Foglio, M.3
  • 12
    • 23944504276 scopus 로고    scopus 로고
    • Synergy between sequence and size in large-scale genomics
    • Gregory T R. Synergy between sequence and size in large-scale genomics. Nat. Rev. Genet. 2005, 6:699-708.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 699-708
    • Gregory, T.R.1
  • 13
    • 0002294347 scopus 로고
    • A simple sequentially rejective Bonferroni test procedure
    • Holm S. A simple sequentially rejective Bonferroni test procedure. Scand. J. Stat. 1979, 6:65-70.
    • (1979) Scand. J. Stat. , vol.6 , pp. 65-70
    • Holm, S.1
  • 14
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • International Chicken Genome Sequencing Consortium (ICGSC)
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716. International Chicken Genome Sequencing Consortium (ICGSC)
    • (2004) Nature , vol.432 , pp. 695-716
  • 15
    • 10644271562 scopus 로고    scopus 로고
    • A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
    • International Chicken Polymorphism Map Consortium (ICPMC)
    • A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature 2004, 432:717-725. International Chicken Polymorphism Map Consortium (ICPMC)
    • (2004) Nature , vol.432 , pp. 717-725
  • 16
    • 33845901252 scopus 로고    scopus 로고
    • Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds
    • Kaiser V B, Tuinen M V, Ellegren H. Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds. Mol. Biol. Evol. 2007, 24:338-347.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 338-347
    • Kaiser, V.B.1    Tuinen, M.V.2    Ellegren, H.3
  • 18
    • 0027383354 scopus 로고
    • Reduced natural selection associated with low recombination in Drosophila melanogaster
    • Kliman R M, Hey J. Reduced natural selection associated with low recombination in Drosophila melanogaster. Mol. Biol. Evol. 1993, 10:1239-1258.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1239-1258
    • Kliman, R.M.1    Hey, J.2
  • 19
    • 33748271469 scopus 로고    scopus 로고
    • An initial map of insertion and deletion (INDEL) variation in the human genome
    • Mills R E, Luttie C T, Larkins C E. An initial map of insertion and deletion (INDEL) variation in the human genome. Genome Res. 2006, 16:1182-1190.
    • (2006) Genome Res. , vol.16 , pp. 1182-1190
    • Mills, R.E.1    Luttie, C.T.2    Larkins, C.E.3
  • 20
    • 0033756237 scopus 로고    scopus 로고
    • Microsatellite variation and recombination rate in the human genome
    • Payseur B A, Nachman M W. Microsatellite variation and recombination rate in the human genome. Genetics 2000, 156:1285-1298.
    • (2000) Genetics , vol.156 , pp. 1285-1298
    • Payseur, B.A.1    Nachman, M.W.2
  • 21
    • 0036021703 scopus 로고    scopus 로고
    • DNA loss and evolution of genome size in Drosophila
    • Petrov D A. DNA loss and evolution of genome size in Drosophila. Genetica 2002, 115:81-91.
    • (2002) Genetica , vol.115 , pp. 81-91
    • Petrov, D.A.1
  • 22
    • 0031891484 scopus 로고    scopus 로고
    • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups
    • Petrov D A, Hartl D L. High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol. Biol. Evol. 1998, 15:293-302.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 293-302
    • Petrov, D.A.1    Hartl, D.L.2
  • 23
    • 0034635568 scopus 로고    scopus 로고
    • Evidenxce for DNA loss as a deterninant of genome size
    • Petrov D A, Angster T A, Johnston J S. Evidenxce for DNA loss as a deterninant of genome size. Science 2000, 287:1060-1590.
    • (2000) Science , vol.287 , pp. 1060-1590
    • Petrov, D.A.1    Angster, T.A.2    Johnston, J.S.3
  • 24
    • 0036862056 scopus 로고    scopus 로고
    • How intron splicing affects the deletion and insertion profile in Drosophila melanogaster
    • Ptak S E, Petrov D A. How intron splicing affects the deletion and insertion profile in Drosophila melanogaster. Genetics 2002, 162:1233-1244.
    • (2002) Genetics , vol.162 , pp. 1233-1244
    • Ptak, S.E.1    Petrov, D.A.2
  • 25
    • 0034049664 scopus 로고    scopus 로고
    • The large srh family of chemoreceptor gene in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses
    • Robertson H M. The large srh family of chemoreceptor gene in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses. Genome Res. 2000, 10:192-203.
    • (2000) Genome Res. , vol.10 , pp. 192-203
    • Robertson, H.M.1
  • 26
    • 0034033777 scopus 로고    scopus 로고
    • The evolution of an alpha-esterase pseudogene inactivated in the Drosophila melanogaster lineage
    • Robin G C, Russell R J, Cutter D J. The evolution of an alpha-esterase pseudogene inactivated in the Drosophila melanogaster lineage. Mol. Biol. Evol. 2000, 17:563-575.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 563-575
    • Robin, G.C.1    Russell, R.J.2    Cutter, D.J.3
  • 27
    • 51349155028 scopus 로고    scopus 로고
    • Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
    • Tian D, Wang Q, Zhang P. Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature 2008, 455:105-108.
    • (2008) Nature , vol.455 , pp. 105-108
    • Tian, D.1    Wang, Q.2    Zhang, P.3
  • 28
    • 51349160932 scopus 로고    scopus 로고
    • The pattern of insertion/deletion polymorphism in Arabidopsis thaliana
    • Zhang W, Sun X, Yuan H. The pattern of insertion/deletion polymorphism in Arabidopsis thaliana. Mol. Genet. Genomics 2008, 280:351-361.
    • (2008) Mol. Genet. Genomics , vol.280 , pp. 351-361
    • Zhang, W.1    Sun, X.2    Yuan, H.3
  • 29
    • 0034523552 scopus 로고    scopus 로고
    • Insertions, substitutions and the origin of microsatellites
    • Zhu Y, Strassmann J E, Queller D C. Insertions, substitutions and the origin of microsatellites. Genet. Res. 2000, 76:227-236.
    • (2000) Genet. Res. , vol.76 , pp. 227-236
    • Zhu, Y.1    Strassmann, J.E.2    Queller, D.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.