miRNA, siRNA, piRNA and argonautes: News in small matters

RNA Biology

Volumn 7, Issue 2, 2010, Pages 133-139

  Riedmann, Lucia T ^a   Schwentner, Raphaela ^a  

^a CHILDREN'S CANCER RESEARCH INSTITUTE   (Austria)

Author keywords

Argonaute; miRNA; piRNA; RNA silencing; RNAi; siRNA; Small non coding RNA

Indexed keywords

ARGONAUTE PROTEIN; DOUBLE STRANDED RNA; MICRORNA; PIWI INTERACTING RNA; RNA INDUCED SILENCING COMPLEX; SMALL INTERFERING RNA; UNTRANSLATED RNA; INITIATION FACTOR;

CONFERENCE PAPER; GENE EXPRESSION; GENE SILENCING; HUMAN; NONHUMAN; NONSENSE MEDIATED MRNA DECAY; RNA INTERFERENCE; ANIMAL; ARABIDOPSIS; BIOLOGY; CAENORHABDITIS ELEGANS; CELL AGING; CHEMISTRY; DISEASES; DROSOPHILA MELANOGASTER; GENETICS; METABOLISM; MOUSE; REPRODUCIBILITY;

ANIMALIA; CAENORHABDITIS ELEGANS; INVERTEBRATA; VERTEBRATA;

ANIMALS; ARABIDOPSIS; CAENORHABDITIS ELEGANS; CELL AGING; COMPUTATIONAL BIOLOGY; DISEASE; DROSOPHILA MELANOGASTER; EUKARYOTIC INITIATION FACTORS; HUMANS; MICE; MICRORNAS; REPRODUCIBILITY OF RESULTS; RNA, SMALL INTERFERING; RNA-INDUCED SILENCING COMPLEX;

EID: 77953731438     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.7.2.11288     Document Type: Conference Paper

References (32)

1. Bartel DP. MicroRNAs: genomics, biogenesis, mechanism and function. Cell 2004; 116:281-97.
2. Garzon R, Calin GA, Croce CM. MicroRNAs in Cancer. Annu Rev Med 2009; 60:167-79.
3. Ma L, Weinberg RA. MicroRNAs in malignant progression. Cell Cycle 2008; 7:570-2.
4. Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006; 6:857-66.
5. Lee YS, Dutta A. MicroRNAs in cancer. Annu Rev Pathol 2009; 4:199-227.
6. Tavazoie SF, Alarcon C, Oskarsson T, Padua D, Wang Q, Bos PD, et al. Endogenous human microRNAs that suppress breast cancer metastasis. Nature 2008; 451:147-52.
7. Christoffersen NR, Shalgi R, Frankel LB, Leucci E, Lees M, Klausen M, et al. p53-independent upregulation of miR-34a during oncogene-induced senescence represses MYC. Cell Death Differ 2009.
8. Chekulaeva M, Filipowicz W. Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells. Curr Opin Cell Biol 2009; 21:452-60.
9. Sarasin-Filipowicz M, Krol J, Markiewicz I, Heim MH, Filipowicz W. Decreased levels of microRNA miR-122 in individuals with hepatitis C responding poorly to interferon therapy. Nat Med 2009; 15:31-3.
10. Eulalio A, Tritschler F, Izaurralde E. The GW182 protein family in animal cells: new insights into domains required for miRNA-mediated gene silencing. RNA 2009; 15:1433-42.
11. Ding L, Han M. GW182 family proteins are crucial for microRNA-mediated gene silencing. Trends Cell Biol 2007; 17:411-6. (Pubitemid 47375102)
12. Eulalio A, Helms S, Fritzsch C, Fauser M, Izaurralde E. A C-terminal silencing domain in GW182 is essential for miRNA function. RNA 2009; 15:1067-77.
13. Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. RNA 2009.
14. Ding XC, Grosshans H. Repression of C. elegans microRNA targets at the initiation level of translation requires GW182 proteins. EMBO J 2009; 28:213-22.
15. Chatterjee S, Grosshans H. Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature 2009; 461:546-9.
16. Aravin AA, Hannon GJ, Brennecke J. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 2007; 318:761-4. (Pubitemid 351411762)
17. Malone CD, Brennecke J, Dus M, Stark A, McCombie WR, Sachidanandam R, et al. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 2009; 137:522-35.
18. Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, et al. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 2007; 128:1089-103. (Pubitemid 46427877)
19. Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, Nagami T, et al. A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila. Science 2007; 315:1587-90. (Pubitemid 46449477)
20. Ghosh Z, Chakrabarti J, Mallick B. miRNomics - The bioinformatics of microRNA genes. Biochem Biophys Res Commun 2007; 363:6-11. (Pubitemid 47440152)
21. Sethupathy P, Megraw M, Hatzigeorgiou AG. A guide through present computational approaches for the identification of mammalian microRNA targets. Nat Methods 2006; 3:881-6. (Pubitemid 44614721)
22. Seitz H. Redefining microRNA targets. Curr Biol 2009; 19:870-3.
23. Shkumatava A, Stark A, Sive H, Bartel DP. Coherent but overlapping expression of microRNAs and their targets during vertebrate development. Genes Dev 2009; 23:466-81.
24. Kim VN, Han J, Siomi MC. Biogenesis of small RNAs in animals. Nat Rev Mol Cell Biol 2009; 10:126-39.
25. Du T, Zamore PD. Beginning to understand microRNA function. Cell Res 2007; 17:661-3.
26. Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 2008; 322:1387-92.
27. Pfeiffer V, Sittka A, Tomer R, Tedin K, Brinkmann V, Vogel J. A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol 2007; 66:1174-91.
28. Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, et al. Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 2008; 4:1000163.
29. Grishok A, Hoersch S, Sharp PA. RNA interference and retinoblastoma- related genes are required for repression of endogenous siRNA targets in Caenorhabditis elegans. Proc Natl Acad Sci USA 2008; 105:20386-91.
30. Daxinger L, Kanno T, Bucher E, van der Winden J, Naumann U, Matzke AJ, et al. A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 2009; 28:48-57.
31. Ballarino M, Pagano F, Girardi E, Morlando M, Cacchiarelli D, Marchioni M, et al. Coupled RNA processing and transcription of intergenic primary microRNAs. Mol Cell Biol 2009; 29:5632-8.
32. Lanford RE, Hildebrandt-Eriksen ES, Petri A, Persson R, Lindow M, Munk ME, et al. Therapeutic Silencing of MicroRNA-122 in Primates with Chronic Hepatitis C Virus Infection. Science 2009.