메뉴 건너뛰기




Volumn 332, Issue 1, 2010, Pages 417-427

Bacterial community of very wet and acidic subalpine forest and fire-induced grassland soils

Author keywords

Bacterial community diversity; Forest; Grassland; Soil; SSU rRNA genes

Indexed keywords

BACTERIUM; DIVERSITY INDEX; FIRE BEHAVIOR; FOREST SOIL; GENETIC ANALYSIS; GRASSLAND; MICROBIAL COMMUNITY; NUCLEIC ACID; PH; PRECIPITATION INTENSITY; RELATIVE ABUNDANCE; SOIL MICROORGANISM; SOIL TYPE; SPECIES DIVERSITY; SUBALPINE ENVIRONMENT; TAXONOMY; TEMPERATURE EFFECT; VEGETATION TYPE;

EID: 77953723299     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11104-010-0308-3     Document Type: Article
Times cited : (13)

References (46)
  • 1
    • 5344236084 scopus 로고    scopus 로고
    • RNA fingerprinting- a new method to screen for differences in plant litter degrading microbial communities
    • Aneja MK, Sharma S, Munch JC, Schloter M (2004) RNA fingerprinting- a new method to screen for differences in plant litter degrading microbial communities. J Microbiol Meth 59: 223-231.
    • (2004) J Microbiol Meth , vol.59 , pp. 223-231
    • Aneja, M.K.1    Sharma, S.2    Munch, J.C.3    Schloter, M.4
  • 2
    • 29144504177 scopus 로고    scopus 로고
    • At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
    • Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005) At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-7736.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7724-7736
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 3
  • 4
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barns SM, Takala SL, Kuske CR (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol 65: 1731-1737.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 5
    • 0042199137 scopus 로고    scopus 로고
    • Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere
    • Baudoin E, Benizri E, Guckert A (2003) Impact of artificial root exudates on the bacterial community structure in bulk soil and maize rhizosphere. Soil Biol Biochem 35: 1183-1192.
    • (2003) Soil Biol Biochem , vol.35 , pp. 1183-1192
    • Baudoin, E.1    Benizri, E.2    Guckert, A.3
  • 6
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J, Triplett EW (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63: 2647-2653.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 7
    • 33750056031 scopus 로고    scopus 로고
    • 16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China
    • Chan OC, Yang XD, Fu Y, Feng ZL, Sha LQ, Casper P, Zou XM (2006) 16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China. FEMS Microbiol Ecol 58: 247-259.
    • (1997) FEMS Microbiol Ecol , vol.58 , pp. 247-259
    • Chan, O.C.1    Yang, X.D.2    Fu, Y.3    Feng, Z.L.4    Sha, L.Q.5    Casper, P.6    Zou, X.M.7
  • 8
    • 43149093151 scopus 로고    scopus 로고
    • Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis
    • Chan OC, Casper P, Sha LQ, Feng ZL, Fu Y, Yang XD, Ulrich A, Zou XM (2008) Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis. FEMS Microbiol Ecol 64: 449-458.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 449-458
    • Chan, O.C.1    Casper, P.2    Sha, L.Q.3    Feng, Z.L.4    Fu, Y.5    Yang, X.D.6    Ulrich, A.7    Zou, X.M.8
  • 9
    • 30344481712 scopus 로고    scopus 로고
    • Particle size fractionation of fungal and bacterial biomass in subalpine grassland and forest soils
    • Chiu CY, Chen TH, Imberger K, Tian G (2006) Particle size fractionation of fungal and bacterial biomass in subalpine grassland and forest soils. Geoderma 130: 265-271.
    • (2006) Geoderma , vol.130 , pp. 265-271
    • Chiu, C.Y.1    Chen, T.H.2    Imberger, K.3    Tian, G.4
  • 11
    • 34247606048 scopus 로고    scopus 로고
    • Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
    • Eichorst SA, Breznak JA, Schmidt TM (2007) Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73: 2708-2717.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2708-2717
    • Eichorst, S.A.1    Breznak, J.A.2    Schmidt, T.M.3
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 35: 22-33.
    • (1985) Evolution , vol.35 , pp. 22-33
    • Felsenstein, J.1
  • 13
    • 77953703835 scopus 로고    scopus 로고
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3. 6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
  • 14
    • 44949148053 scopus 로고    scopus 로고
    • Bacterial diversity of Taxus rhizophere: Culture-independent and culture-dependent approaches
    • Hao DC, Ge GB, Yang L (2008) Bacterial diversity of Taxus rhizophere: culture-independent and culture-dependent approaches. FEMS Microbiol Lett 284: 204-212.
    • (2008) FEMS Microbiol Lett , vol.284 , pp. 204-212
    • Hao, D.C.1    Ge, G.B.2    Yang, L.3
  • 15
    • 24644473294 scopus 로고    scopus 로고
    • Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils
    • Hart SC, DeLuca TH, Newman GS, MacKenzie MD, Boyle SI (2005) Post-fire vegetative dynamics as drivers of microbial community structure and function in forest soils. For Ecol Manage 220: 166-184.
    • (2005) For Ecol Manage , vol.220 , pp. 166-184
    • Hart, S.C.1    Deluca, T.H.2    Newman, G.S.3    Mackenzie, M.D.4    Boyle, S.I.5
  • 17
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 18
    • 0035132013 scopus 로고    scopus 로고
    • Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region
    • Imberger KT, Chiu CY (2001) Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in a humid, sub-tropical region. Biol Fertil Soils 33: 105-110.
    • (2001) Biol Fertil Soils , vol.33 , pp. 105-110
    • Imberger, K.T.1    Chiu, C.Y.2
  • 20
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Jannsen PH (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72: 1719-1728.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1719-1728
    • Jannsen, P.H.1
  • 21
    • 33847386307 scopus 로고    scopus 로고
    • Microbial community structure and activity in a Colorado Rocky Mountain forest soil scarred by slash pile burning
    • Jiménez Esquilin AE, Stromberger ME, Massman WJ, Frank JM, Shepperd WD (2007) Microbial community structure and activity in a Colorado Rocky Mountain forest soil scarred by slash pile burning. Soil Biol Biochem 39: 1111-1120.
    • (2007) Soil Biol Biochem , vol.39 , pp. 1111-1120
    • Jiménez Esquilin, A.E.1    Stromberger, M.E.2    Massman, W.J.3    Frank, J.M.4    Shepperd, W.D.5
  • 22
    • 38649113598 scopus 로고    scopus 로고
    • Soil scarification and wildfire interactions and effects on microbial communities and carbon
    • Jiménez Esquilin AE, Stromberger ME, Shepperd WD (2008) Soil scarification and wildfire interactions and effects on microbial communities and carbon. Soil Sci Soc Am J 72: 111-118.
    • (2008) Soil Sci Soc Am J , vol.72 , pp. 111-118
    • Jiménez Esquilin, A.E.1    Stromberger, M.E.2    Shepperd, W.D.3
  • 23
    • 63349105158 scopus 로고    scopus 로고
    • A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
    • Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N (2009) A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J 3: 442-453.
    • (2009) ISME J , vol.3 , pp. 442-453
    • Jones, R.T.1    Robeson, M.S.2    Lauber, C.L.3    Hamady, M.4    Knight, R.5    Fierer, N.6
  • 24
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro (Ed.), New York: Academic
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic, New York, pp 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 25
    • 0842324405 scopus 로고    scopus 로고
    • Bacterial diversity in aquatic and other environments: What 16S rDNA libraries can tell us
    • Kemp PF, Aller JY (2004) Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us. FEMS Microbiol Ecol 47: 161-177.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 161-177
    • Kemp, P.F.1    Aller, J.Y.2
  • 26
    • 0035070157 scopus 로고    scopus 로고
    • Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes
    • Keswani J, Whitman WB (2001) Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int J Syst Evol Microbiol 51: 667-678.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 667-678
    • Keswani, J.1    Whitman, W.B.2
  • 27
    • 0026080952 scopus 로고
    • Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment
    • Kishimoto N, Kosako Y, Tano T (1991) Acidobacterium capsulatum gen. nov., sp. nov.: an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr Opin Microbiol 22: 1-7.
    • (1991) Curr Opin Microbiol , vol.22 , pp. 1-7
    • Kishimoto, N.1    Kosako, Y.2    Tano, T.3
  • 28
    • 70350371597 scopus 로고    scopus 로고
    • Annual fire and mowing alter biomass, depth distribution, and C and N content of roots and soil in tallgrass prairie
    • Kitchen DJ, Blair JM, Callaham MA Jr (2009) Annual fire and mowing alter biomass, depth distribution, and C and N content of roots and soil in tallgrass prairie. Plant Soil 323: 235-247.
    • (2009) Plant Soil , vol.323 , pp. 235-247
    • Kitchen, D.J.1    Blair, J.M.2    Callaham Jr., M.A.3
  • 29
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackbrandt and M. Goodfellow (Eds.), New York: Wiley
    • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackbrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 30
    • 47349088053 scopus 로고    scopus 로고
    • Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil
    • Lee SH, Ka JO, Cho JC (2008) Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil. FEMS Microbiol Lett 285: 263-269.
    • (2008) FEMS Microbiol Lett , vol.285 , pp. 263-269
    • Lee, S.H.1    Ka, J.O.2    Cho, J.C.3
  • 31
    • 77950569546 scopus 로고    scopus 로고
    • Lin YT, Huang YJ, Tang SL, Whitman WB, Coleman DC, Chiu CY (2009) Bacterial community diversity in undisturbed perhumid montane forest soils in Taiwan. Microb Ecol doi: 10. 1007/s00248-009-9574-0.
  • 32
    • 33846253531 scopus 로고    scopus 로고
    • Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients
    • Lipson DA (2007) Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients. FEMS Microbiol Ecol 59: 418-427.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 418-427
    • Lipson, D.A.1
  • 34
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace NR (1997) A molecular view of microbial diversity and the biosphere. Science 276: 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 35
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An on-line retrieval system for biological sequence banks
    • Perrière G, Gouy M (1996) WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78: 364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 36
    • 0342470615 scopus 로고    scopus 로고
    • Does short-term heating of forest humus change its properties as a substrate for microbes
    • Pietikäinen J, Hiukka R, Fritze H (2000) Does short-term heating of forest humus change its properties as a substrate for microbes. Soil Biol Biochem 32: 277-288.
    • (2000) Soil Biol Biochem , vol.32 , pp. 277-288
    • Pietikäinen, J.1    Hiukka, R.2    Fritze, H.3
  • 37
    • 0034771561 scopus 로고    scopus 로고
    • A direct link between forest vegetation type and soil organic matter composition
    • Quideau SA, Chadwick OA, Bensei A, Graham RC, Anderson MA (2001) A direct link between forest vegetation type and soil organic matter composition. Geoderma 104: 41-60.
    • (2001) Geoderma , vol.104 , pp. 41-60
    • Quideau, S.A.1    Chadwick, O.A.2    Bensei, A.3    Graham, R.C.4    Anderson, M.A.5
  • 38
    • 33644962444 scopus 로고    scopus 로고
    • Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
    • Sait M, Davis KER, Janssen PH (2006) Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol 72: 1852-1857.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1852-1857
    • Sait, M.1    Davis, K.E.R.2    Janssen, P.H.3
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 70449701463 scopus 로고    scopus 로고
    • Schleifer KH (2009) Classification of Bacteria and Archaea: Past, present and future. Syst Appl Microbiol doi: 10. 1016/j. syapm. 2009. 09. 002.
  • 41
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 42
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton DR, Furlong MA, Rathbun SL, Whitman WB (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 4374-4376.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 43
    • 37849036782 scopus 로고    scopus 로고
    • Effects of wildfire and harvest disturbances in forest soil bacterial communities
    • Smith NR, Kishchuk BE, Mohn W (2008) Effects of wildfire and harvest disturbances in forest soil bacterial communities. Appl Environ Microbiol 74: 216-224.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 216-224
    • Smith, N.R.1    Kishchuk, B.E.2    Mohn, W.3
  • 45
    • 77950340480 scopus 로고    scopus 로고
    • Yonekura Y, Ohta S, Kiyono Y, Aksa D, Morisada K, Tanaka N, Kanzaki M (2009) Changes in soil carbon stock after deforestation and subsequent establishment of "Imperata" grassland in the Asian humid tropics. Plant Soil doi: 10. 1007/s11104-009-0175-y.
  • 46
    • 27144525864 scopus 로고    scopus 로고
    • Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analyses
    • Zimmermann J, Gonzalez JM, Saiz-Jimenez C, Ludwig W (2005) Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analyses. Geomicrobiol J 22: 379-388.
    • (2005) Geomicrobiol J , vol.22 , pp. 379-388
    • Zimmermann, J.1    Gonzalez, J.M.2    Saiz-Jimenez, C.3    Ludwig, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.