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Volumn 361, Issue 1, 2007, Pages 102-108

Analysis of 2′-O-methylated nucleosides and pseudouridines in ribosomal RNAs using DNAzymes

Author keywords

2 O Ribose methylation; DNAzyme; Pseudouridine; rRNA modification; snoRNA; Yeast

Indexed keywords

ALKYLATION; METHYLATION; NUCLEOTIDES; PHYSIOLOGY; RNA; YEAST;

EID: 33845892140     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2006.11.001     Document Type: Article
Times cited : (37)

References (27)
  • 1
    • 0036629250 scopus 로고    scopus 로고
    • rRNA modifications and ribosome function
    • Decatur W.A., and Fournier M.J. rRNA modifications and ribosome function. Trends Biochem. Sci. 27 (2002) 344-351
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 2
    • 0027536869 scopus 로고
    • Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
    • Tollervey D., Lehtonen H., Jansen R., Kern H., and Hurt E.C. Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72 (1993) 443-457
    • (1993) Cell , vol.72 , pp. 443-457
    • Tollervey, D.1    Lehtonen, H.2    Jansen, R.3    Kern, H.4    Hurt, E.C.5
  • 3
    • 0034141555 scopus 로고    scopus 로고
    • Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution
    • Wang H., Boisvert D., Kim K.K., Kim R., and Kim S.H. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution. EMBO J. 19 (2000) 317-323
    • (2000) EMBO J. , vol.19 , pp. 317-323
    • Wang, H.1    Boisvert, D.2    Kim, K.K.3    Kim, R.4    Kim, S.H.5
  • 6
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo Z., Henry Y., Bachellerie J.P., Caizergues-Ferrer M., and Kiss T. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85 (1996) 1077-1088
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 7
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot P., Bortolin M.L., and Kiss T. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89 (1997) 799-809
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 8
    • 0028949935 scopus 로고
    • Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA
    • Maden B.E., Corbett M.E., Heeney P.A., Pugh K., and Ajuh P.M. Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA. Biochimie 77 (1995) 22-29
    • (1995) Biochimie , vol.77 , pp. 22-29
    • Maden, B.E.1    Corbett, M.E.2    Heeney, P.A.3    Pugh, K.4    Ajuh, P.M.5
  • 9
    • 0033582628 scopus 로고    scopus 로고
    • A computational screen for methylation guide snoRNAs in yeast
    • Lowe T.M., and Eddy S.R. A computational screen for methylation guide snoRNAs in yeast. Science 283 (1999) 1168-1171
    • (1999) Science , vol.283 , pp. 1168-1171
    • Lowe, T.M.1    Eddy, S.R.2
  • 10
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
    • Bakin A., and Ofengand J. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 32 (1993) 9754-9762
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 11
    • 0030899226 scopus 로고    scopus 로고
    • A new method for detecting sites of 2′-O-methylation in RNA molecules
    • Yu Y.T., Shu M.D., and Steitz J.A. A new method for detecting sites of 2′-O-methylation in RNA molecules. RNA 3 (1997) 324-331
    • (1997) RNA , vol.3 , pp. 324-331
    • Yu, Y.T.1    Shu, M.D.2    Steitz, J.A.3
  • 12
    • 0025612935 scopus 로고
    • Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry
    • Pomerantz S.C., and McCloskey J.A. Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry. Methods Enzymol. 193 (1990) 796-824
    • (1990) Methods Enzymol. , vol.193 , pp. 796-824
    • Pomerantz, S.C.1    McCloskey, J.A.2
  • 13
    • 0034637542 scopus 로고    scopus 로고
    • Identities and phylogenetic comparisons of posttranscriptional modifications in 16S ribosomal RNA from Haloferax volcanii
    • Kowalak J.A., Bruenger E., Crain P.F., and McCloskey J.A. Identities and phylogenetic comparisons of posttranscriptional modifications in 16S ribosomal RNA from Haloferax volcanii. J. Biol. Chem. 275 (2000) 24484-24489
    • (2000) J. Biol. Chem. , vol.275 , pp. 24484-24489
    • Kowalak, J.A.1    Bruenger, E.2    Crain, P.F.3    McCloskey, J.A.4
  • 14
    • 0035723065 scopus 로고    scopus 로고
    • Mapping 2′-O-methyl groups in ribosomal RNA
    • Maden B.E. Mapping 2′-O-methyl groups in ribosomal RNA. Methods 25 (2001) 374-382
    • (2001) Methods , vol.25 , pp. 374-382
    • Maden, B.E.1
  • 15
    • 0024618642 scopus 로고
    • Preparation of RNA from unspheroplasted yeast cells (Saccharomyces cerevisiae)
    • McEntee C.M., and Hudson A.P. Preparation of RNA from unspheroplasted yeast cells (Saccharomyces cerevisiae). Anal. Biochem. 176 (1989) 303-306
    • (1989) Anal. Biochem. , vol.176 , pp. 303-306
    • McEntee, C.M.1    Hudson, A.P.2
  • 16
    • 0034047698 scopus 로고    scopus 로고
    • Using DNAzymes to cut, process, and map RNA molecules for structural studies or modification
    • Pyle A.M., Chu V.T., Jankowsky E., and Boudvillain M. Using DNAzymes to cut, process, and map RNA molecules for structural studies or modification. Methods Enzymol. 317 (2000) 140-146
    • (2000) Methods Enzymol. , vol.317 , pp. 140-146
    • Pyle, A.M.1    Chu, V.T.2    Jankowsky, E.3    Boudvillain, M.4
  • 17
    • 1142281951 scopus 로고    scopus 로고
    • Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme
    • Cruz R.P., Withers J.B., and Li Y. Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem. Biol. 11 (2004) 57-67
    • (2004) Chem. Biol. , vol.11 , pp. 57-67
    • Cruz, R.P.1    Withers, J.B.2    Li, Y.3
  • 18
    • 28544448500 scopus 로고    scopus 로고
    • In vitro selection, characterization, and application of deoxyribozymes that cleave RNA
    • Silverman S.K. In vitro selection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res. 33 (2005) 6151-6163
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6151-6163
    • Silverman, S.K.1
  • 19
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro S.W., and Joyce G.F. A general purpose RNA-cleaving DNA enzyme. Proc. Natl. Acad. Sci. USA 94 (1997) 4262-4266
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 20
    • 0032558463 scopus 로고    scopus 로고
    • Mechanism and utility of an RNA-cleaving DNA enzyme
    • Santoro S.W., and Joyce G.F. Mechanism and utility of an RNA-cleaving DNA enzyme. Biochemistry 37 (1998) 13330-13342
    • (1998) Biochemistry , vol.37 , pp. 13330-13342
    • Santoro, S.W.1    Joyce, G.F.2
  • 21
    • 0034650291 scopus 로고    scopus 로고
    • In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme
    • Li J., Zheng W., Kwon A.H., and Lu Y. In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme. Nucleic Acids Res. 28 (2000) 481-488
    • (2000) Nucleic Acids Res. , vol.28 , pp. 481-488
    • Li, J.1    Zheng, W.2    Kwon, A.H.3    Lu, Y.4
  • 22
    • 2442643944 scopus 로고    scopus 로고
    • Detection and quantitation of RNA base modifications
    • Zhao X., and Yu Y.T. Detection and quantitation of RNA base modifications. RNA 10 (2004) 996-1002
    • (2004) RNA , vol.10 , pp. 996-1002
    • Zhao, X.1    Yu, Y.T.2
  • 23
    • 23744501897 scopus 로고    scopus 로고
    • Novel approach to quantitative detection of specific rRNA in a microbial community, using catalytic DNA
    • Suenaga H., Liu R., Shiramasa Y., and Kanagawa T. Novel approach to quantitative detection of specific rRNA in a microbial community, using catalytic DNA. Appl. Environ. Microbiol. 71 (2005) 4879-4884
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4879-4884
    • Suenaga, H.1    Liu, R.2    Shiramasa, Y.3    Kanagawa, T.4
  • 24
    • 0033761964 scopus 로고    scopus 로고
    • The influence of arm length asymmetry and base substitution on the activity of the 10-23 DNA enzyme
    • Cairns M.J., Hopkins T.M., Witherington C., and Sun L.Q. The influence of arm length asymmetry and base substitution on the activity of the 10-23 DNA enzyme. Antisense Nucleic Acid Drug Dev. 10 (2000) 323-332
    • (2000) Antisense Nucleic Acid Drug Dev. , vol.10 , pp. 323-332
    • Cairns, M.J.1    Hopkins, T.M.2    Witherington, C.3    Sun, L.Q.4
  • 25
    • 0030995546 scopus 로고    scopus 로고
    • TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins syndrome throughout its coding region
    • Wise C.A., Chiang L.C., Paznekas W.A., Sharma M., Musy M.M., Ashley J.A., Lovett M., and Jabs E.W. TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins syndrome throughout its coding region. Proc. Natl. Acad. Sci. USA 94 (1997) 3110-3115
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3110-3115
    • Wise, C.A.1    Chiang, L.C.2    Paznekas, W.A.3    Sharma, M.4    Musy, M.M.5    Ashley, J.A.6    Lovett, M.7    Jabs, E.W.8
  • 26
    • 26444526314 scopus 로고    scopus 로고
    • The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation
    • Gonzales B., Henning D., So R.B., Dixon J., Dixon M.J., and Valdez B.C. The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation. Hum. Mol. Genet. 14 (2005) 2035-2043
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 2035-2043
    • Gonzales, B.1    Henning, D.2    So, R.B.3    Dixon, J.4    Dixon, M.J.5    Valdez, B.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.