-
1
-
-
0035513806
-
Identification by subtractive hybridization of sequences specific for salmonella enterica serovar enteritidis
-
Agron, P.G., Walker, R.L., Kinde, H., Sawyer, S.J., Hayes, D.C., Wollard, J., and Andersen, G.L. (2001) Identification by subtractive hybridization of sequences specific for salmonella enterica serovar enteritidis. Appl Environ Microbiol 67: 4984-4991.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4984-4991
-
-
Agron, P.G.1
Walker, R.L.2
Kinde, H.3
Sawyer, S.J.4
Hayes, D.C.5
Wollard, J.6
Andersen, G.L.7
-
2
-
-
0007989154
-
-
Beltran, P., Musser, J.M., Helmuth, R., Farmer, J.J., III, Frerichs, W.M., Wachsmuth, I.K., et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proc Natl Acad Sci USA 85: 7753-7757.
-
Beltran, P., Musser, J.M., Helmuth, R., Farmer, J.J., III, Frerichs, W.M., Wachsmuth, I.K., et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proc Natl Acad Sci USA 85: 7753-7757.
-
-
-
-
3
-
-
2942527326
-
Oligonucleotide microarrays in microbial diagnostics
-
Bodrossy, L., and Sessitsch, A. (2004) Oligonucleotide microarrays in microbial diagnostics. Curr Opin Microbiol 7: 245-254.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 245-254
-
-
Bodrossy, L.1
Sessitsch, A.2
-
4
-
-
0038302040
-
Development and validation of a diagnostic microbial microarray for methanotrophs
-
Bodrossy, L., Stralis-Pavese, N., Murrell, J.C., Radajewski, S., Weilharter, A., and Sessitsch, A. (2003) Development and validation of a diagnostic microbial microarray for methanotrophs. Environ Microbiol 5: 566-582.
-
(2003)
Environ Microbiol
, vol.5
, pp. 566-582
-
-
Bodrossy, L.1
Stralis-Pavese, N.2
Murrell, J.C.3
Radajewski, S.4
Weilharter, A.5
Sessitsch, A.6
-
5
-
-
0033930049
-
Salmonella nomenclature
-
Brenner, F.W., Villar, R.G., Angulo, F.J., Tauxe, R., and Swaminathan, B. (2000) Salmonella nomenclature. J Clin Microbiol 38: 2465-2467.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 2465-2467
-
-
Brenner, F.W.1
Villar, R.G.2
Angulo, F.J.3
Tauxe, R.4
Swaminathan, B.5
-
6
-
-
0037401015
-
Detection of bacterial pathogens in environmental samples using DNA microarrays
-
Call, D.R., Borucki, M.K., and Loge, F.J. (2003) Detection of bacterial pathogens in environmental samples using DNA microarrays. J Microbiol Methods 53: 235-243.
-
(2003)
J Microbiol Methods
, vol.53
, pp. 235-243
-
-
Call, D.R.1
Borucki, M.K.2
Loge, F.J.3
-
7
-
-
0032053667
-
Phylogenetic relationships of Salmonella based on DNA sequence comparison of atpD encoding the beta subunit of ATP synthase
-
Christensen, H., and Olsen, J.E. (1998) Phylogenetic relationships of Salmonella based on DNA sequence comparison of atpD encoding the beta subunit of ATP synthase. FEMS Microbiol Lett 161: 89-96.
-
(1998)
FEMS Microbiol Lett
, vol.161
, pp. 89-96
-
-
Christensen, H.1
Olsen, J.E.2
-
8
-
-
0031709795
-
Restriction fragment length polymorphism analysis of some flagellin genes of Salmonella enterica
-
Dauga, C., Zabrovskaia, A., and Grimont, P.A. (1998) Restriction fragment length polymorphism analysis of some flagellin genes of Salmonella enterica. J Clin Microbiol 36: 2835-2843.
-
(1998)
J Clin Microbiol
, vol.36
, pp. 2835-2843
-
-
Dauga, C.1
Zabrovskaia, A.2
Grimont, P.A.3
-
9
-
-
0036178704
-
Multiplex PCR-based detection and identification of the most common Salmonella second-phase flagellar antigens
-
Echeit, M.A., Herrera, S., Garaizar, J., and Usera, M.A. (2002) Multiplex PCR-based detection and identification of the most common Salmonella second-phase flagellar antigens. Res Microbiol 153: 107-113.
-
(2002)
Res Microbiol
, vol.153
, pp. 107-113
-
-
Echeit, M.A.1
Herrera, S.2
Garaizar, J.3
Usera, M.A.4
-
10
-
-
77953600739
-
-
Felsenstein, J, 1989) PHYLIP, Phylogeny Inference Package Version 3.2, Cladistics 5: 164-166
-
Felsenstein, J. (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
-
-
-
-
11
-
-
7444221126
-
Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs
-
Hashsham, S.A., Wick, L.M., Rouillard, J.M., Gulari, E., and Tiedje, J.M. (2004) Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. Biosens Bioelectron 20: 668-683.
-
(2004)
Biosens Bioelectron
, vol.20
, pp. 668-683
-
-
Hashsham, S.A.1
Wick, L.M.2
Rouillard, J.M.3
Gulari, E.4
Tiedje, J.M.5
-
12
-
-
33847408948
-
Blind comparison of traditional serotyping with three multiplex PCRs for the identification of Salmonella serotypes
-
Herrera-Leon, S., Ramiro, R., Arroyo, M., Diez, R., Usera, M.A., and Echeita, M.A. (2007) Blind comparison of traditional serotyping with three multiplex PCRs for the identification of Salmonella serotypes. Res Microbiol 158: 122-127.
-
(2007)
Res Microbiol
, vol.158
, pp. 122-127
-
-
Herrera-Leon, S.1
Ramiro, R.2
Arroyo, M.3
Diez, R.4
Usera, M.A.5
Echeita, M.A.6
-
13
-
-
17044363144
-
Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis
-
van Hoek, A.H.A., Scholtens, I.M.J., Cloeckaert, A., and Aarts, H.J.M. (2005) Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis. J Microbiol Methods 62: 13-23.
-
(2005)
J Microbiol Methods
, vol.62
, pp. 13-23
-
-
van Hoek, A.H.A.1
Scholtens, I.M.J.2
Cloeckaert, A.3
Aarts, H.J.M.4
-
14
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T.R., Mao, M., Jones, A.R., Burchard, J., Marton, M.J., Shannon, K.W., et al. (2001) Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol 19: 342-347.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
-
15
-
-
0034115962
-
Host adaptation and the emergence of infectious disease: The Salmonella paradigm
-
Kingsley, R.A., and Baumler, A.J. (2000) Host adaptation and the emergence of infectious disease: the Salmonella paradigm. Mol Microbiol 36: 1006-1014.
-
(2000)
Mol Microbiol
, vol.36
, pp. 1006-1014
-
-
Kingsley, R.A.1
Baumler, A.J.2
-
16
-
-
33750998520
-
Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
-
Konstantinidis, K.T., Ramette, A., and Tiedje, J.M. (2006) Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Appl Environ Microbiol 72: 7286-7293.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7286-7293
-
-
Konstantinidis, K.T.1
Ramette, A.2
Tiedje, J.M.3
-
17
-
-
0036246561
-
Multilocus sequence typing for characterization of clinical and environmental Salmonella strains
-
Kotetishvili, M., Stine, O.C., Kreger, A., Morris, J.G., Jr, and Sulakvelidze, A. (2002) Multilocus sequence typing for characterization of clinical and environmental Salmonella strains. J Clin Microbiol 40: 1626-1635.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1626-1635
-
-
Kotetishvili, M.1
Stine, O.C.2
Kreger, A.3
Morris Jr, J.G.4
Sulakvelidze, A.5
-
18
-
-
0021467577
-
Supplement No. XXVII (1983) to the Kauffmann-White scheme]
-
Le Minor, L., and Bockemuhl, J. (1984) [Supplement No. XXVII (1983) to the Kauffmann-White scheme]. Ann Microbiol (Paris) 135B: 45-51.
-
(1984)
Ann Microbiol (Paris)
, vol.135 B
, pp. 45-51
-
-
Le Minor, L.1
Bockemuhl, J.2
-
19
-
-
0023912702
-
1987 supplement (no. 31) to the schema of Kauffmann-White]
-
Le Minor, L., and Bockemuhl, J. (1988) [1987 supplement (no. 31) to the schema of Kauffmann-White]. Ann Inst Pasteur Microbiol 139: 331-335.
-
(1988)
Ann Inst Pasteur Microbiol
, vol.139
, pp. 331-335
-
-
Le Minor, L.1
Bockemuhl, J.2
-
20
-
-
0028355397
-
Recombinational basis of serovar diversity in Salmonella enterica
-
Li, J., Nelson, K., McWhorter, A.C., Whittam, T.S., and Selander, R.K. (1994) Recombinational basis of serovar diversity in Salmonella enterica. Proc Natl Acad Sci USA 91: 2552-2556.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 2552-2556
-
-
Li, J.1
Nelson, K.2
McWhorter, A.C.3
Whittam, T.S.4
Selander, R.K.5
-
21
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
22
-
-
2442596132
-
Sequencing and comparative analysis of flagellin genes fliC, fljB, and flpA from Salmonella
-
McQuiston, J.R., Parrenas, R., Ortiz-Rivera, M., Gheesling, L., Brenner, F., and Fields, P.I. (2004) Sequencing and comparative analysis of flagellin genes fliC, fljB, and flpA from Salmonella. J Clin Microbiol 42: 1923-1932.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 1923-1932
-
-
McQuiston, J.R.1
Parrenas, R.2
Ortiz-Rivera, M.3
Gheesling, L.4
Brenner, F.5
Fields, P.I.6
-
23
-
-
33845233656
-
Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray
-
Malorny, B., Bunge, C., Guerra, B., Prietz, S., and Helmuth, R. (2007) Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray. Mol Cell Probes 21: 56-65.
-
(2007)
Mol Cell Probes
, vol.21
, pp. 56-65
-
-
Malorny, B.1
Bunge, C.2
Guerra, B.3
Prietz, S.4
Helmuth, R.5
-
24
-
-
4844220778
-
Towards the development of a DNA-sequence based approach to serotyping of Salmonella enterica
-
Mortimer, C.K., Peters, T.M., Gharbia, S.E., Logan, J.M., and Arnold, C. (2004) Towards the development of a DNA-sequence based approach to serotyping of Salmonella enterica. BMC Microbiol 4: 31.
-
(2004)
BMC Microbiol
, vol.4
, pp. 31
-
-
Mortimer, C.K.1
Peters, T.M.2
Gharbia, S.E.3
Logan, J.M.4
Arnold, C.5
-
25
-
-
23744505837
-
Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation
-
Pelludat, C., Prager, R., Tschape, H., Rabsch, W., Schuchhardt, J., and Hardt, W.D. (2005) Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation. J Clin Microbiol 43: 4092-4106.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4092-4106
-
-
Pelludat, C.1
Prager, R.2
Tschape, H.3
Rabsch, W.4
Schuchhardt, J.5
Hardt, W.D.6
-
27
-
-
0343114513
-
Supplement 1998 (no. 42) to the Kauffmann-White scheme
-
Popoff, M.Y., Bockemuhl, J., and Brenner, F.W. (2000a) Supplement 1998 (no. 42) to the Kauffmann-White scheme. Res Microbiol 151: 63-65.
-
(2000)
Res Microbiol
, vol.151
, pp. 63-65
-
-
Popoff, M.Y.1
Bockemuhl, J.2
Brenner, F.W.3
-
28
-
-
0034533437
-
Supplement 1999 (no. 43) to the Kauffmann-White scheme
-
Popoff, M.Y., Bockemuhl, J., and Brenner, F.W. (2000b) Supplement 1999 (no. 43) to the Kauffmann-White scheme. Res Microbiol 151: 893-896.
-
(2000)
Res Microbiol
, vol.151
, pp. 893-896
-
-
Popoff, M.Y.1
Bockemuhl, J.2
Brenner, F.W.3
-
29
-
-
0037386637
-
Supplement 2001 (no. 45) to the Kauffmann-White scheme
-
Popoff, M.Y., Bockemuhl, J., and Gheesling, L.L. (2003) Supplement 2001 (no. 45) to the Kauffmann-White scheme. Res Microbiol 154: 173-174.
-
(2003)
Res Microbiol
, vol.154
, pp. 173-174
-
-
Popoff, M.Y.1
Bockemuhl, J.2
Gheesling, L.L.3
-
30
-
-
4344589434
-
Characterization of Salmonella enterica subspecies I genovars by use of microarrays
-
Porwollik, S., Boyd, E.F., Choy, C., Cheng, P., Florea, L., Proctor, E., and McClelland, M. (2004) Characterization of Salmonella enterica subspecies I genovars by use of microarrays. J Bacteriol 186: 5883-5898.
-
(2004)
J Bacteriol
, vol.186
, pp. 5883-5898
-
-
Porwollik, S.1
Boyd, E.F.2
Choy, C.3
Cheng, P.4
Florea, L.5
Proctor, E.6
McClelland, M.7
-
31
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
Santalucia, J., Jr, Allawi, H.T., and Seneviratne, P.A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry 35: 3555-3562.
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
Santalucia Jr, J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
32
-
-
0025305913
-
Recombination of Salmonella Phase 1 flagelling genes generates new serovars
-
Smith, N.H., Beltran, P., and Selander, R.K. (1990) Recombination of Salmonella Phase 1 flagelling genes generates new serovars. J Bacteriol 172: 2209-2216.
-
(1990)
J Bacteriol
, vol.172
, pp. 2209-2216
-
-
Smith, N.H.1
Beltran, P.2
Selander, R.K.3
-
33
-
-
23744446376
-
DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes
-
Sukhnanand, S., Alcaine, S., Warnick, L.D., Su, W.L., Hof, J., Craver, M.P., et al. (2005) DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes. J Clin Microbiol 43: 3688-3698.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3688-3698
-
-
Sukhnanand, S.1
Alcaine, S.2
Warnick, L.D.3
Su, W.L.4
Hof, J.5
Craver, M.P.6
-
34
-
-
33947278463
-
MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars
-
Tankouo-Sandjong, B., Sessitsch, A., Liebana, E., Korn-schober, C., Allerberger, F., Hachler, H., and Bodrossy, L. (2007) MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars. J Microbiol Methods 69: 23-36.
-
(2007)
J Microbiol Methods
, vol.69
, pp. 23-36
-
-
Tankouo-Sandjong, B.1
Sessitsch, A.2
Liebana, E.3
Korn-schober, C.4
Allerberger, F.5
Hachler, H.6
Bodrossy, L.7
-
35
-
-
26644454381
-
Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism
-
Torpdahl, M., Skov, M.N., Sandvang, D., and Baggesen, D.L. (2005) Genotypic characterization of Salmonella by multilocus sequence typing, pulsed-field gel electrophoresis and amplified fragment length polymorphism. J Microbiol Methods 63: 173-184.
-
(2005)
J Microbiol Methods
, vol.63
, pp. 173-184
-
-
Torpdahl, M.1
Skov, M.N.2
Sandvang, D.3
Baggesen, D.L.4
-
36
-
-
34248179977
-
Unravelling microbial communities with DNA-microarrays: Challenges and future directions
-
Wagner, M., Smidt, H., Loy, A., and Zhou, J. (2007) Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb Ecol 53: 498-506.
-
(2007)
Microb Ecol
, vol.53
, pp. 498-506
-
-
Wagner, M.1
Smidt, H.2
Loy, A.3
Zhou, J.4
-
37
-
-
42649092544
-
Evaluation of the Premi(R)Test Salmonella, a commercial low-density DNA microarray system intended for routine identification and typing of Salmonella enterica
-
Wattiau, P.,Weijers, T., Andreoli, P., Schliker, C., Veken, H.V., Maas, H.M., et al. (2008) Evaluation of the Premi(R)Test Salmonella, a commercial low-density DNA microarray system intended for routine identification and typing of Salmonella enterica. Int J Food Microbiol 123(3): 293-298.
-
(2008)
Int J Food Microbiol
, vol.123
, Issue.3
, pp. 293-298
-
-
Wattiau, P.1
Weijers, T.2
Andreoli, P.3
Schliker, C.4
Veken, H.V.5
Maas, H.M.6
-
38
-
-
34547579220
-
Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes
-
Yoshida, C., Franklin, K., Konczy, P., McQuiston, J.R., Fields, P.I., Nash, J.H., et al. (2007) Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes. J Microbiol Methods 70(2): 261-271.
-
(2007)
J Microbiol Methods
, vol.70
, Issue.2
, pp. 261-271
-
-
Yoshida, C.1
Franklin, K.2
Konczy, P.3
McQuiston, J.R.4
Fields, P.I.5
Nash, J.H.6
-
39
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
Zhou, J. (2003) Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol 6: 288-294.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 288-294
-
-
Zhou, J.1
|