Protein folding using inter-residue contact

Proceedings - 1st International Symposium on 3D Data Processing Visualization and Transmission, 3DPVT 2002

Volumn , Issue , 2002, Pages 724-728

  Vendruscolo, M ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; DATA HANDLING; DATA VISUALIZATION; GROUND STATE; PROTEIN FOLDING; PROTEINS; THREE DIMENSIONAL COMPUTER GRAPHICS; VECTORS; VISUALIZATION;

CONFORMATIONAL SPACE; CONTACT VECTORS; DATABASE INFORMATION; ENERGY MINIMIZATION; INTER-RESIDUE CONTACT; NATIVE STATE; PROTEIN STRUCTURES; SIMULATIONS OF PROTEIN FOLDING;

VECTOR SPACES;

EID: 77953481528     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/TDPVT.2002.1024149     Document Type: Conference Paper

References (44)

1. Chan, H. S. & Dill, K. A. Proc. Natl. Acad. USA 87, 6388-6392 (1990).
2. Holm, L. & Sander, C. J. Mol. Biol. 233, 123-138 (1994).
3. Lancia, G. unpublished, (2002).
4. Lifson, S. & Sander, C. Nature 282, 109-111 (1979).
5. Godzik, A., Skolnik, J. & Kolinski, A. Prot. Eng. 6, 801-810 (1993).
6. Olmea, O. & Valencia, A. Fold. & Des. 2, S25-S32 (1997).
7. Ortiz, A. R., Koliski, A. & Skolnick, J. Proc. Natl. Acad. USA 95, 1020-1025 (1995).
8. Mirny, L. A. & Domany, E. Proteins 26, 391-410 (1996).
9. Lund, O., Fridman, K., Gorodkin, J., Bohr, H., Bohr, J., Hansen, J. & Brunak, S. Prot. Eng. 10, 1241-1248 (1997).
10. Fariselli, P. & Casadio, R. Prot. Eng. 12, 15-21 (1999).
11. Orengo, C. A., Bray, J. E., Hubbard, T., LoConte, L. & Sillitoe, I. Proteins Suppl 3, 149-170 (1999).
12. Zaki, M. J., Jin, S. & Bystroff, C. 168-175, (2000).
13. Bonneau, R. & Baker, D. Annu. Rev. Biophys. Biomol. Struct. 30, 173-189 (2001).
14. Saitoh, S., Nakai, T. & Nishikawa, K. Proteins 15, 191-204 (1994).
15. Skorobogatiy, M., Guo, H. & Zuckermann, M. J. Macromolecules 30, 3403-3410 (1997).
16. Ejtehadi, M. R., Hamedani, H., Seyed-Allaei, H., Shahrezaei, V. & Yahyanejad, M. Phys. Rev. E 57, 3298-3301(1998).
17. Li, H., Tang, C. & Wingreen, N. S. Proc. Natl. Acad. USA 95, 4987-4990 (1998).
18. Hao, M.-H. & Scheraga, H. A. Physica A 244, 124-146 (1998).
19. de Araujo, A. F. P. Proc. Natl. Acad. USA 96, 12482-12487 (1999).
20. Huang, E. & Levitt, M. J. Mol. Biol. 252, 709-720 (1995).
21. Kocher, J. P. A., Rooman, M. J. & Wodak, S. J. J. Mol. Biol. 235, 1598-1613 (1994).
22. Eisenberg, D. & Mclachlan, A. D. Nature 319, 199-203 (1986).
23. Rost, B. & Sander, C. Proteins 20, 216-226 (1994).
24. Fariselli, P. & Casadio, R. Bioinformatics 17, 202-203 (2001).
25. Kabakcioglu, A., Kanter, I., Vendruscolo, M. & Domany, E. Phys. Rev. E 65, 041904 (2002).
26. Vendruscolo, M., Kussell, E. & Domany, E. Fold. & Des. 2, 295-306 (1997).
27. Hinds, D. A. & Levitt, M. J. Mol. Biol. 243, 668-682 (1994).
28. Mirny, L. A. & Shakhnovich, E. I. J. Mol. Biol. 264, 1164-1179 (1996).
29. Crippen, G. M. & Havel, T. F. Distance geometry and molecular conformation. Wiley, New York, (1988).
30. Brünger, A. T., Clore, G. M., Gronenborn, A. M. & Karplus, M. Proc. Natl. Acad. USA 83, 3801-3805 (1986).
31. Vendruscolo, M., Subramanian, B., Kanter, I., Domany, E. & Lebowitz, J. L. Phys. Rev. E 58, 977-984 (1999).
32. Vendruscolo, M. & Domany, E. Fold. & Des. 3, 329-336 (1998).
33. Park, K., Vendruscolo, M. & Domany, E. Proteins 40, 237-248 (2000).
34. Banavar, J. R. & Maritan, A. Proteins 42, 433-435 (2001).
35. Vendruscolo, M. & Domany, E. J. Chem. Phys. 109, 11101-11108 (1998).
36. Tanaka, S. & Scheraga, H. A. Macromolecules 9, 945-950 (1976).
37. Miyazawa, S. & Jernigan, R. L. J. Mol. Biol. 256, 623-644 (1996).
38. Maiorov, V. N. & Crippen, G. M. J. Mol. Biol. 227, 876-888 (1992).
39. Goldstein, R., Luthey-Schulten, Z. A. & Wolynes, P. G. Proc. Natl. Acad. USA 89, 4918-4922 (1992).
40. Dima, R. I., Settanni, G., Micheletti, C., Banavar, J. R. & Maritan, A. J. Chem. Phys. 112, 9151-9166 (2000).
41. Tobi, D., Shafran, G., Linial, N. & Elber, R. Proteins 40, 71-85 (2000).
42. Vendruscolo, M., Mirny, L., Shakhnovich, E. I. & Domany, E. Proteins 41, 192-201 (2000).
43. Vendruscolo, M., Najmanovich, R. & Domany, E. Phys. Rev. Lett. 82, 656-659 (1999).
44. Vendruscolo, M., Najmanovich, R. & Domany, E. Proteins 38, 134-148 (2000).