Molecular studies resolve Nyholmiella (Orthotrichaceae) as a separate genus

Journal of Systematics and Evolution

Volumn 48, Issue 3, 2010, Pages 183-194

  Jakub, Sawicki ^a   PĺAšek, Vítězslav ^b   Szczecińska, Monika ^a  

^a UNIVERSITY OF WARMIA AND MAZURY IN OLSZTYN   (Poland)

^b UNIVERSITY OF OSTRAVA   (Czech Republic)

Author keywords

Molecular taxonomy; Nyholmiella; Orthotrichum; Phylogeny

Indexed keywords

NYHOLMIELLA; ORTHOTRICHACEAE; ORTHOTRICHUM; ORTHOTRICHUM GYMNOSTOMUM; ORTHOTRICHUM OBTUSIFOLIUM;

EID: 77953447126     PISSN: 16744918     EISSN: 17596831     Source Type: Journal    
DOI: 10.1111/j.1759-6831.2010.00076.x     Document Type: Article

References (51)

1. Baldwin BG, Sanderson MJ, Porter JM. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
2. Baczkiewicz A, Sawicki J, Buczkowska K, Polok K, Zielinski R. 2008. Application of different DNA markers in studies on cryptic species of Aneurapinguis(Hepaticae,Metzgeriales). Cryptogamie Bryologie 29: 3-21.
3. Cano MJ, Werner O, Guerra J. 2005. A morphometric and molecular study in Tortula subulata complex (Pottiaceae, Bryophyta). Botanical Journal of Linnean Society 149: 333-350.
4. Damsholt K, Holmen K, Warncke E. 1969. A list of the bryophytes of Denmark. Botanisk Tidsskrift 65: 163-183.
5. Delogne CH. 1885. Flore cryptogamique de Belgique. Annales de la Société Belge de Microscopie 9: 7-220.
6. Dillon SL, Lawrence PK, Henry RJ, Price J. 2007. Sorghum resolved as a distinct genus based on combined ITS1, ndhF and Adh1 analyses. Plant Systematics and Evolution 268:29-43.
7. Edgar RC. 2004. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792-1797.
8. Erickson DL, Spouge J, Resch A, Weigt LA, Kress WJ. 2008.DNA barcoding in land plants: Developing standards to quantify and maximize success. Taxon 57: 1304-1316.
9. Felsenstein J. 1985. Confidence limits on phylogenies: An ap-proach using the bootstrap. Evolution 39: 783-791.
10. Fiedorow P, Odrzykoski I, Szweykowska-Kulinska Z. 1998. Phy-logenetic studies of liverworts using molecular biology tech-niques. In: Małuszynska J ed. Plant cytogenetics. Katowice:Silesian University Press. 244-249.
11. Goffinet B, Bayer RJ, Vitt DH. 1998. Circumscription and phy-logeny of the Orthotrichales (Bryopsida) inferred from rbcLsequence analyses. American Journal of Botany 85: 1324-1337.
12. Goffinet B, Shaw AJ, Cox CJ, Wickett NJ, Boles S. 2004. Phylo-genetic inferences in the Orthotrichoideae (Orthotrichaceae:Bryophyta) based on variation in four loci from all genomes. MonographsinSystematicBotanyfromtheMissouriBotan-ical Garden 98: 270-289.
13. Goffinet B, Buck WR, Wall MA. 2007. Orthotrichum freyanum (Orthotrichaceae, Bryophyta), a new epiphytic species from Chile. Nova Hedwigia 131: 1-11.
14. Gunnarsson U, Hassel K, Söderström L. 2005. Genetic structure of the endangered peat moss Sphagnum angermanicum in Sweden: A result of historic or contemporary processes?Bryologist 108: 194-203.
15. Hagen I. 1908. Forarbejder til en norsk lovmosflora. I. Or-thotrichacea. Det Kongelige Norske Videnskabers Selskabs Skrifter 1907, 13: 1-100.
16. Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
17. Hedenäs L. 2008. Molecular variation in Drepanocladus aduncus s.l. does not support recognition of more than one species in Europe. Journal of Bryology 30: 108-120.
18. Heinrichs J, Klugmann F, Hentschel J, Schneider H. 2009.DNA taxonomy, cryptic speciation and diversification of the Neotropical-African liverwort, Marchesinia brachiata (Lejeuneaceae, Porellales). Molecular Phylogenetics and Evolution 53: 113-121.
19. Hey J, Wakeley J. 1997. A coalescent estimator of the population recombination rate. Genetics 145: 833-846.
20. Huelsenbeck JP, Ronquist FR. 2001. MRBAYES: Bayesian in-ference of phylogeny. Bioinformatics 17: 754-755.
21. Hyvönen J, Koskinen S, Merrill GLS, Hedderson TA, Sten-roos S. 2004. Phylogeny of Polytrichales (Bryophyta) based on simultaneous analysis of molecular and morphologi- cal data. Molecular Phylogenetics and Evolution 31: 915-928.
22. Lara F, Garilleti R, Mazimpaka V. 1994. Orthotrichum macro- cephalum sp. nov., a new moss of section Diaphana from the Iberian Peninsula. Bryologist 97: 402-408.
23. Lara F, Garilleti R, Medina R, Mazimpaka V. 2009. A new key to the genus Orthotrichum Hedw. in Europe and the Mediterraneanregion.CryptogamieBryologie30:129-142.
24. Lewinsky J. 1984. The genus Orthotrichum Hedw. (Musci) in Australia. A taxonomic revision. Journal of the Hattori Botanical Laboratory 56: 369-460.
25. Lewinsky J. 1992. The genus Orthotrichum Hedw. (Or- thotrichaceae, Musci) in Southeast Asia. A taxonomic revi-sion. Journal of the Hattori Botanical Laboratory 72: 1-88.
26. Lewinsky J. 1993. A synopsis of the genus Orthotrichum Hedw. (Musci, Orthotrichaceae). Bryobrothera 2: 1-59.
27. Lewinsky-Haapasaari J, Hedenäs L. 1998. A cladistic analysis of the moss genus Orthotrichum. Bryologist 101: 519-555.
28. Mols JB, Keßler PJA, Rogstad SH, Saunders RMK. 2008. Reas- signment of six Polyalthia species to the new genus Maasia (Annonaceae): Molecular and morphological congruence.Systematic Botany 33: 490-494.
29. Newmaster SG, Fazekas AJ, Steeves RAD, Janovec J. 2008. Test-ing candidate plant barcode regions in the Myristicaceae.Molecular Ecology Resources 8: 480-490.
30. Nyholm E. 1969. Illustrated moss flora of Fennoscandia. Lund:Gleerup.Peakall R, Smouse PE. 2006. GenAlEx 6: Genetic analysis in Ex-cel. Population genetic software for teaching and research.Molecular Ecology Notes 6: 288-295.
31. Pedersen N, Hedenäs L. 2005. Taxonomic and nomenclatural implications of phylogenetic studies of the Bryaceae based on molecular data and morphology. Bryologist 108: 123-128.
32. Plášek V, Sawicki J. 2010. Is the hairy vaginula an diagnostic feature in the taxonomy of the genus Orthotrichum? Acta Societatis Botanicorum Poloniae 79: 75-80.
33. Plášek V, Sawicki J, Trávníčková V, Pasečná M. 2009. Or-thotrichum moravicum (Orthotrichaceae), a new moss species from the Czech Republic. Bryologist 112: 329-336.
34. Posada D, Crandall KA. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14: 817-818.
35. Sang T, Crawford DJ, Stuessy TF. 1997. Chloroplast DNA phy-logeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
36. Sawicki J, Szczecinska M. 2007. Semi-specific intron-exon splice junction markers in bryophyte studies. Biodiversity Research and Conservation 5-8: 25-30.
37. Sawicki J, Nadolski L., Hoscik M, Zielinski R. 2008. Identifica-tion of Conocephalum conicum and C. salebrosum (Hep-aticophyta) based on DNA markers. Časopis Slezskeho Zemskeho Muzea Opava (A) 57: 259-264.
38. Sawicki J, Plášek V, Szczecinska M. 2009a. Preliminary studies on the phylogeny of the genus Orthotrichum inferred from nuclear ITS sequences. Annales Botanici Fennici 46: 507-515.
39. Sawicki J, Plášek V, Szczecinska M. 2009b. Molecular evidence do not support the current division of Orthotrichum sub-genus Gymnoporus. Plant Systematics and Evolution 279:125-137.
40. Shaw, AJ.2000.Molecularphylogeographyandcrypticspeciation in the mosses Mielichhoferia elongata and M. mielichhofe-riana (Bryaceae). Molecular Ecology 9: 595-608.
41. Smith, AJE. 1996. The moss flora of Britain and Ireland. Cam-bridge: Cambridge University Press.
42. Swofford DL. 2003. PAUP: Phylogenetic analysis using parsi-mony (and other methods) 4.0 Beta. Sunderland: Sinauer
43. Szczecinska M, Sawicki J, Polok K, Hołdynski C, Zielinski R.2006. Comparison of the Polygonatum species from Poland on the basis of different DNA markers. Annales Botanici Fennici 43: 379-388.
44. Szczecinska M, Sawicki J, Wasowicz K, Hołdynski Cz. 2009. Genetic variation of the relict and endangered population of Chamaedaphne calyculata (Ericaceae) in Poland. Dendro-biology 62: 23-33.
45. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
46. Vanderpoorten A, Hedenäs L, Jacquemart A-L. 2003. Differenti-ation in DNA fingerprinting and morphology among species of the pleurocarpous moss genus, Rhytidiadelphus (Hyloco-miaceae). Taxon 52: 229-236.
47. Virtanen, V.2003.PhylogenyofBartramiaceaebasedonmorphol-ogy and on rbcL, rps4 and trnL-F sequence data. Bryologist 106: 280-296.
48. Vitt DH. 1971. The infrageneric evolution, phylogeny, and taxon-omy of the genus Orthotrichum (Musci) in North America.Nova Hedwigia 21: 683-711.
49. Vitt DH. 1973. A revision of genus Orthotrichum in North Amer-ica, north of Mexico. Bryophytorum Bibliotheca 1: 1-208.
50. Weining S, Langridge P. 1991. Identification and mapping of polymorphisms in cereals based on polymerase chain reac-tion. Theoretical and Applied Genetics 82: 209-216.
51. Zietkiewicz E, Rafalski A, Labuda D. 1994. Genome fingerprint-ing by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183.