The most predominant spoligopatterns of mycobacterium tuberculosis isolates among Iranian, Afghan-immigrant, Pakistani and Turkish tuberculosis patients: A comparative analysis

Chemotherapy

Volumn 56, Issue 3, 2010, Pages 248-257

  Merza, Muayad A ^a,b   Farnia, Parissa ^a   Salih, Ahmad M ^b   Masjedi, Mohammad Reza ^a   Velayati, Ali Akbar ^a  

^a SHAHID BEHESHTI UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b UNIVERSITY OF DUHOK   (Iraq)

Author keywords

Ancient moderntuberculosis; Iran, tuberculosis; Mycobacterium tuberculosis; Spoligopattern

Indexed keywords

ADULT; AFGHANISTAN; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DRUG SENSITIVITY; FEMALE; HUMAN; IMMIGRANT; IRAN; MAJOR CLINICAL STUDY; MALE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PAKISTAN; PRIORITY JOURNAL; TUBERCULOSIS; TURKEY (REPUBLIC);

ADULT; AFGHANISTAN; DNA, INTERGENIC; EMIGRANTS AND IMMIGRANTS; FEMALE; HUMANS; IRAN; MALE; MIDDLE AGED; MYCOBACTERIUM TUBERCULOSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDES; PAKISTAN; TUBERCULOSIS; TURKEY;

EID: 77953351672     PISSN: 00093157     EISSN: None     Source Type: Journal    
DOI: 10.1159/000316846     Document Type: Article

References (36)

1. World Health Organization: Global Tuberculosis Control: Epidemiology, Strategy, Financing. WHO Report 2009. WHO/HTM/ TB/2009.411. Geneva, WHO, 2009 .
2. Velayati AA, Farnia P, Ibrahim TA, Haroun RZ, Kuan HO, Ghanavi J, Farnia P, Kabarei AN, Tabarsi P, Omar AR, Varahram M, Masjedi MR: Differences in cell wall thickness between resistant and nonresistant strains of Mycobacterium tuberculosis : using transmission electron microscopy. Chemotherapy 2009; 55: 303-307.
3. Marcel N, Nahta A, Balganesh M: Evaluation of killing kinetics of anti-tuberculosis drugs on Mycobacterium tuberculosis using a bacteriophage-based assay. Chemotherapy 2008; 54: 404-411.
4. Rahim Z, Zaman K, van der Zanden AG, Möllers MJ, van Soolingen D, Raqib R, Zaman K, Begum V, Rigouts L, Portaels F, Rastogi N, Sola C: Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes. J Clin Microbiol 2007; 45: 3791-3794.
5. Sechi LA, Zanetti S, Delogu G, Montinaro B, Sanna A, Fadda G : Molecular epidemiology of Mycobacterium tuberculosis strains isolated from different regions of Italy and Pakistan. J Clin Microbiol 1996; 34: 1825-1828.
6. Singh UB, Suresh N, Bhanu NV, Arora J, Pant H, Sinha S, Aggarwal RC, Singh S, Pande JN, Sola C, Rastogi N, Seth P: Predominant tuberculosis spoligotypes, Delhi, India. Emerg Infect Dis 2004; 10: 1138-1142.
7. Gori A, Bandera A, Marchetti G, Degli Esposti A, Catozzi L, Nardi GP, Gazzola L, Ferrario G, van Embden JD, van Soolingen D, Moroni M, Franzetti F, Nardi GP: Spoligotyping and Mycobacterium tuberculosis . Emerg Infect Dis 2005; 11: 1242-1248.
8. Kremer K, van Soolingen D, Frothingham R, Haas WH, Hermans PW, Martín C, Palittapongarnpim P, Plikaytis BB, Riley LW, Yakrus MA, Musser JM, van Embden JD: Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 1999; 37: 2607-2618.
9. Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, Locht C: Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 2000; 36: 762-771.
10. Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C: Automated highthroughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001; 39: 3563-3571.
11. Brudey K, Driscoll JR, Rigouts L, et al: Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 2006; 6: 23.
12. Sola C, Filliol I, Legrand E, Mokrousov I, Rastogi N: Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS 1081 , IS 6110 , VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades. J Mol Evol 2001; 53: 680-689.
13. Sebban M, Mokrousov I, Rastogi N, Sola C: A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis . Bioinformatics 2002; 18: 235-243.
14. Filliol I, Driscoll JR, van Soolingen D, et al: Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg Infect Dis 2002; 8: 1347-1349.
15. Ramazanzadeh R, Farnia P, Amirmozafari N, Ghazi F, Ghadertotonchi Z, Kamran J, Mohammadi F, Mirsaedi M, Masjedi M: Comparison between molecular epidemiology, geographical regions and drug resistance in Mycobacterium tuberculosis strains isolated from Iranian and Afghan patients. Chemotherapy 2006; 52: 316-320.
16. Tanveer M, Hasan Z, Siddiqui AR, Ali A, Kanji A, Ghebremicheal S, Hasan R: Genotyping and drug resistance patterns of M. tuberculosis strains in Pakistan. BMC Infect Dis 2008; 8: 171.
17. Gencer B, Shinnick TM: Molecular genotyping of Mycobacterium tuberculosis isolates from Turkey. Am J Infect Dis 2005; 1: 5-11.
18. Kent PT, Kubica GP: Public Health Mycobacteriology: A Guide for Level II Laboratory. Atlanta, US Department of Health and Human Services, 1985.
19. Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, van Embden J: Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997; 35: 907-914.
20. Filliol I, Driscoll JR, van Soolingen D, et al: Snapshot of moving and expanding clones of M. tuberculosis and their global distribution assessed by spoligotyping in an international study. J Clin Microbiol 2003; 41: 1963-1970.
21. Soini H, Pan X, Amin A, Graviss EA, Siddiqui A, Musser JM: Characterization of M. tuberculosis isolates from patients in Houston, Texas, by spoligotyping. J Clin Microbiol 2000; 38: 669-679.
22. Sola C, Filliol I, Gutierrez MC, Mokrousov I, Vincent V, Rastogi N: Spoligotype database of Mycobacterium tuberculosis : biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives. Emerg Infect Dis 2001; 7: 390-396.
23. Niobe-Eyangoh SN, Kuaban C, Sorlin P, Cunin P, Thonnon J, Sola C, Rastogi N, Vincent V, Gutierrez MC: Genetic biodiversity of Mycobacterium tuberculosis strains from patients with pulmonary tuberculosis in Cameroon. J Clin Microbiol 2003; 41: 2547-2553.
24. Sreevatsan S, Pan XI, Stockbauer K, Connell ND, Kreiswirth BN, Whittam TS, Musser JM: Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci USA 1997; 94: 9869-9874.
25. Velayati AK, Farnia P, Mirsaeidi M, Masjedi MR: The most prevalent Mycobacterium tuberculosis superfamilies among Iranian and Afghan TB cases. Scand J Infect Dis 2006; 38: 463-468.
26. Cavalli-Sforza LL, Menozzi P, Piazza A: General introduction, geography and environment; in Cavalli-Sforza LL, Menozzi P, Piazza A (eds): The History and Geography of Human Genes. Princeton, Princeton University Press, 1994, pp 195-197.
27. van Soolingen D: Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements. J Intern Med 2001; 2491: 1-26.
28. Anh DD, Borgdorff MW, Van LN, Lan NT, van Gorkom T, Kremer K, van Soolingen D: Mycobacterium tuberculosis Beijing genotype emerging in Vietnam. Emerg Infect Dis 2000; 6: 302-305.
29. Sola C, Filliol I, Gutierrez MC, Mokrousov I, Vincent V, Rastogi N: Spoligotype database of Mycobacterium tuberculosis : biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives. Emerg Infect Dis 2001; 7: 390-396.
30. Marais BJ, Victor TC, Hesseling AC, Barnard M, Jordaan A, Brittle W, Reuter H, Beyers N, van Helden PD, Warren RM, Schaaf HS: Beijing and Haarlem genotypes are overrepresented among children with drug-resistant tuberculosis in the Western Cape Province of South Africa. J Clin Microbiol 2006; 44: 3539-3543.
31. Farnia P, Masjedi MR, Mirsaeidi M, Mohammadi F, Jallaledin-Ghanavi, Vincent V, Bahadori M, Velayati AA: Prevalence of Haarlem I and Beijing types of Mycobacterium tuberculosis strains in Iranian and Afghan MDR-TB patients. J Infect 2006; 53: 331-336.
32. Drobniewski F, Balabanova Y, Nikolayevsky V, Ruddy M, Kuznetzov S, Zakharova S, Melentyev A, Fedorin I: Drug-resistant tuberculosis, clinical virulence and the dominance of the Beijing strain family in Russia. JAMA 2005; 293: 2726-2731.
33. Doroudchi M, Kremer K, Basiri EA, Kadivar MR, van Soolingen D, Ghaderi AA: IS 6110-RFLP and spoligotyping of Mycobacterium tuberculosis in isolates in Iran. Scand J Infect Dis 2000; 32: 663-668.
34. Hasan Z, Tanveer M, Kanji A, Hasan Q, Ghebremichael S, Hasan R: Spoligotyping of Mycobacterium tuberculosis isolates from Pakistan reveals predominance of Central Asian Strain 1 and Beijing isolates. J Clin Microbiol 2006; 44: 1763-1768.
35. Munsiff SS, Nivin B, Sacajiu G, Mathema B, Bifani P, Kreiswirth BN: Persistence of a highly resistant strain of tuberculosis in New York City during 1990-1999. J Infect Dis 2003; 188: 356-363.
36. Farnia P, Masjedi MR, Varahram M, Mirsaeidi M, Ahmadi M, Khazampour M, Tabarsi P, Baghei P, Marjane M, Bahadori M, Zarifi AZ, Velayati AA: The recent-transmission of Mycobacterium tuberculosis strains among Iranian and Afghan relapse cases: a DNA-fingerprinting using RFLP and spoligotyping. BMC Infect Dis 2008; 8: 109.