Molecular characterization of bovine enteric caliciviruses: A distinct third genogroup of noroviruses (Norwalk-like viruses) unlikely to be of risk to humans

Journal of Virology

Volumn 77, Issue 4, 2003, Pages 2789-2798

  Oliver, S L ^a   Dastjerdi, A M ^a   Wong, S ^a,c   El Attar, L ^a   Gallimore, C ^b   Brown, D W G ^b   Green, J ^b   Bridger, J C ^a  

^a ROYAL VETERINARY COLLEGE   (United Kingdom)

^b CENTRAL PUBLIC HEALTH LABORATORY   (United Kingdom)

^c BOEHRINGER INGELHEIM PHARMA GMBH AND CO KG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; HEALTH; HUMAN; MOLECULAR PHYLOGENY; NONHUMAN; NORWALK GASTROENTERITIS VIRUS; OPEN READING FRAME; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RISK; SEQUENCE ANALYSIS; VIRUS CAPSID;

AMINO ACID SEQUENCE; ANIMALS; CALICIVIRIDAE INFECTIONS; CAPSID PROTEINS; CATTLE; CATTLE DISEASES; HUMANS; MOLECULAR SEQUENCE DATA; NOROVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS; ZOONOSES;

EID: 0037321672     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.77.4.2789-2798.2003     Document Type: Article

References (48)

1. Ando, T., J. S. Noel, and R. L. Fankhauser. 2000. Genetic classification of "Norwalk-like viruses." J. Infect. Dis. 181(Suppl. 2):S336-S348.
2. Berry, E. S., D. E. Skilling, J. E. Barlough, N. A. Vedros, L. J. Gage, and A. W. Smith. 1990. New marine calicivirus serotype infective for swine. Am. J. Vet. Res. 51:1184-1187.
3. Boom, R., C. J. A. Sol, M. M. M. Salimans, C. L. Jansen, P. M. E. Wertheim van Dillen, and J. van der Noordaa. 1990. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28:495-503.
4. Bridger, J. C., G. A. Hall, and J. F. Brown. 1984. Characterisation of a calici-like virus (Newbury Agent) found in association with astrovirus in bovine diarrhea. Infect. Immun. 43:133-138.
5. Cauchi, M. R., J. C. Doultree, J. A. Marshall, and P. J. Wright. 1996. Molecular characterization of Camberwell virus and sequence variation in ORF3 of small round-structured (Norwalk-like) viruses. J. Med. Virol. 49:70-76.
6. Dastjerdi, A. M., J. Green, C. I. Gallimore, D. W. G. Brown, and J. C. Bridger. 1999. The bovine Newbury agent-2 is genetically more closely related to human SRSVs than to animal caliciviruses. Virology 254:1-5.
7. Dastjerdi, A. M., D. R. Snodgrass, and J. C. Bridger. 2000. Characterisation of the bovine enteric calici-like virus, Newbury agent 1. FEMS Microbiol. Lett. 192:125-131.
8. Dingle, K. E., P. R. Lambden, E. O. Caul, and I. N. Clarke. 1995. Human enteric Caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round structured virus. J. Gen. Virol. 76:2349-2355.
9. Fankhauser, R. L., J. S. Noel, S. S. Monroe, T. Ando, and R. I. Glass. 1998. Molecular epidemiology of "Norwalk-like viruses" in outbreaks of gastroenteritis in the United States. J. Infect. Dis. 178:1571-1578.
10. Green, J., C. I. Gallimore, J. P. Norcott, D. Lewis, and D. W. G. Brown. 1995. Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis. J. Med. Virol. 47:392-398.
11. Green, J., J. Vinje, C. I. Gallimore, M. Koopmans, A. Hale, D. W. Brown, J. C. Clegg, and J. Chamberlain. 2000. Capsid protein diversity among Norwalk-like viruses. Virus Genes 20:227-236.
12. Green, K. Y. 2000. Summary of the first international workshop on human caliciviruses. J. Infect. Dis. 181(Suppl. 2):S252-S253.
13. Green, K. Y., R. M. Chanock, and A. Z. Kapikian. 2001. Human caliciviruses, p. 841-874. In Fields virology, 4th ed. Lippincott, Williams & Wilkins, Baltimore, Md.
14. Green, S. M., P. R. Lambden, E. O. Caul, C. R. Ashley, and I. N. Clarke. 1995. Capsid diversity in small round-structured viruses: molecular characterization of an antigenically distinct human enteric calicivirus. Virus Res. 37:271-283.
15. Green, S. M., P. R. Lamden, Y. Deng, A. J. Lowes, S. Lineham, J. Bushell, J. E. Rogers, O. E. Caul, C. R. Ashley, and I. N. Clarke. 1995. Polymerase chain reaction detection of small round-structured viruses from two related hospital outbreaks of gastroenteritis using inosine containing primers. J. Med. Virol. 45:197-202.
16. Günther, H., and P. Otto. 1987. Studies into diarrhoea of young calves. Seventh communication: "Zackenvirus" (Jena-Agens 117/80), a new diarrhoea pathogen to calf. Arch. Exp. Vet. Med. (Leipzig) 41:934-938.
17. Hale, A. D., S. E. Crawford, M. Ciarlet, J. Green, C. Gallimore, D. W. Brown, X. Jiang, and M. K. Estes. 1999. Expression and self-assembly of Grimsby virus: antigenic distinction from Norwalk and Mexico viruses. Clin. Diagn. Lab. Immunol. 6:142-145.
18. Hall, G. A., J. C. Bridger, B. E. Brooker, K. R. Parsons, and E. Ormerod. 1984. Gnotobiotic calves experimentally infected with a calicivirus-like (Newbury) agent. Vet. Pathol. 21:208-215.
19. Hardy, M. E., S. F. Kramer, J. J. Treanor, and M. K. Estes. 1997. Human calicivirus genogroup II capsid sequence diversity revealed by analyses of the prototype Snow Mountain agent. Arch. Virol. 142:1469-1479.
20. Jiang, X., C. Espul, W. M. Zhong, H. Cuello, and D. O. Matson. 1999. Characterization of a novel human calicivirus that may be a naturally occurring recombinant. Arch. Virol. 144:2377-2387.
21. Jiang, X., D. O. Matson, F. R. Velazquez, J. J. Calva, W. M. Zhong, J. Hu, G. M. Ruiz-Palacios, and L. K. Pickering. 1995. Study of Norwalk-related viruses in Mexican children. J. Med. Virol. 47:309-316.
22. Jiang, X., M. Wang, K. Wang, and M. K. Estes. 1993. Sequence and genomic organization of Norwalk virus. Virology 195:51-61.
23. Kobayashi, S., K. Sakae, Y. Suzuki, K. Shinozaki, M. Okada, H. Ishiko, K. Kamata, K. Suzuki, K. Natori, T. Miyamura, and N. Takeda. 2000. Molecular cloning, expression, and antigenicity of Seto virus belonging to geno-group I Norwalk-like viruses. J. Clin. Microbiol. 38:3492-3494.
24. Lamden, P. R., E. O. Caul, C. R. Ashley, and I. N. Clarke. 1993. Sequence and genome organization of a human small round-structured (Norwalk-like) virus. Science 259:516-519.
25. Lew, J. F., A. Z. Kapikian, X. Jiang, M. K. Estes, and K. Y. Green. 1994. Molecular characterization and expression of the capsid protein of a Norwalk-like virus recovered from a Desert Shield troop with gastroenteritis. Virology 200:319-325.
26. Lew, J. F., A. Z. Kapikian, J. Valdesuso, and K. Y. Green. 1994. Molecular characterization of Hawaii virus and other Norwalk-like viruses: evidence for genetic polymorphism among human caliciviruses. J. Infect. Dis. 170:535-542.
27. Lew, J. F., M. Petric, A. Z. Kapikian, X. Jiang, M. K. Estes, and K. Y. Green. 1994. Identification of minireovirus as a Norwalk-like virus in pediatric patients with gastroenteritis. J. Virol. 68:3391-3396.
28. Liu, B. L., P. R. Lambden, H. H. Günther, P. Otto, M. Elschner, and I. N. Clarke. 1999. Molecular characterization of a bovine enteric calicivirus: relationship to the Norwalk-like viruses. J. Virol. 73:819-825.
29. Lole, K. S., R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni, N. G. Novak, R. Ingersoll, H. W. Sheppard, and S. C. Ray. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
30. Mattick, K. L., J. Green, P. Punia, F. J. Belda, C. I. Gallimore, and D. W. G. Brown. 2000. The heteroduplex mobility assay (HMA) as a pre-sequencing screen for Norwalk-like viruses. J. Virol. Methods 87:161-169.
31. Mead, P. S., L. Slutsker, V. Dietz, L. F. McCaig, J. S. Bresee, C. Shapiro, P. M. Griffin, and R. V. Tauxe. 1999. Food-related illness and death in the United States. Emerging Infect. Dis. 5:607-625.
32. Murphy, F. A., E. P. J. Gibbs, M. C. Horzinek, and M. J. Studdert. 1999. Veterinary virology, p. 533-541. Academic Press, San Diego, Calif.
33. Neill, J. D., R. F. Meyer, and B. S. Seal. 1995. Genetic relatedness of the caliciviruses: San Miguel sea lion and vesicular exanthema of swine viruses constitute a single genotype within the Caliciviridae. J. Virol. 69:4484-4488.
34. 48: relationship to the capsid protein of other animal caliciviruses. Virus Res. 54:39-50.
35. Page, R. D. M. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
36. Prasad, B. V., M. E. Hardy, T. Dokland, J. Bella, M. G. Rossmann, and M. K. Estes. 1999. X-ray crystallographic structure of the Norwalk virus capsid. Science 286:287-290.
37. Reynolds, D. J., J. H. Morgan, N. Chanter, P. W. Jones, J. C. Bridger, T. G. Debney, and K. J. Bunch. 1986. Microbiology of calf diarrhoea in southern Britain. Vet. Rec. 119:34-39.
38. Schmidt, H. A., K. Strimmer, M. Vingron, and A. von Haeseler. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
39. Schreier, E., F. Doring, and U. Kunkel. 2000. Molecular epidemiology of outbreaks of gastroenteritis associated with small round structured viruses in Germany in 1997/98. Arch. Virol. 145:443-453.
40. Smith, A. W. 1987. San Miguel sea lion virus, p. 481-489. In M. J. Appel (ed.), Virus infections of carnivores. Elsevier Science Publishers, Amsterdam, The Netherlands.
41. Smith, A. W., T. G. Akers, S. H. Madin, and N. A. Vedros. 1973. San Miguel sea lion virus isolation, preliminary characterization and relationship to vesicular exanthema of swine virus. Nature 244:108-110.
42. Someya, Y., N. Takeda, and T. Miyamura. 2000. Complete nucleotide sequence of the chiba virus genome and functional expression of the 3C-like protease in Escherichia coli. Virology 278:490-500.
43. Staden, R. 1996. The Staden sequence analysis package. Mol. Biotechnol. 5:233-241.
44. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
45. van der Poel, W. H. M., J. Vinjé, R. van der Heide, M. Herrera, A. Vivi, and M. P. G. Koopmans. 2000. Norwalk-like calicivirus genes in farm animals. Emerg. Infect. Dis. 6:36-41.
46. van Regenmortel, M. H. V., C. M. Fauquet, D. H. L. Bishop, E. B. Corstens, M. K. Estes, S. M. Lemon, J. Manitoff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner. 2000. Virus taxonomy: classification and nomenclature of viruses, p. 725-735. In Seventh report of the ICTV. Academic Press, San Diego, Calif.
47. Vinje, J., and M. P. Koopmans. 2000. Simultaneous detection and genotyping of "Norwalk-like viruses" by oligonucleotide array in a reverse line blot hybridization format. J. Clin. Microbiol. 38:2595-2601.
48. Woode, G. N., and J. C. Bridger. 1978. Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves. J. Med. Microbiol. 11:441-452.