A new citrus linkage map based on SRAP, SSR, ISSR, POGP, RGA and RAPD markers

Euphytica

Volumn 173, Issue 2, 2010, Pages 265-277

  Gulsen, Osman ^a   Uzun, Aydin ^b   Canan, Ihsan ^b   Seday, Ubeyit ^b   Canihos, Ercan ^c  

^a ERCIYES UNIVERSITY   (Turkey)

^b ALATA HORTICULTURAL RESEARCH INSTITUTE   (Turkey)

^c Plant Protection Research Institute Adana   (Turkey)

Author keywords

Citrus reticulata; Clementine; F1 mapping; Orlando tangelo; Peroxidase; Two way pseudo testcross strategy

Indexed keywords

ALTERNARIA; ALTERNARIA ALTERNATA; CITRUS; CITRUS RETICULATA; CITRUS TANGELO; PUNCTUM BLANDIANUM;

EID: 77953325185     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0146-7     Document Type: Article

References (41)

1. Barkley NA, Roose ML, Krueger RR, Federici CT (2006) Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs). Theor Appl Genet 112: 1519-1531.
2. Barrett HC (1985) Hybridization of Citrus and related genera. Fruit Var J 39: 11-16.
3. Bradshaw HD, Stettles RF (1994) Molecular genetics of growth and development in Populus. II. Segregation distortion due to genetic load. Theor Appl Genet 139: 963-973.
4. Canihos Y, Peewer TL, Timmer LW (1998) Temperature, leaf wetness, and isolate effects on infection of Minneola tangelo leaves by Alternaria sp. Plant Dis 83: 429-433.
5. Cervera MT, Storme V, Ivens B, Gusmao J, Liu BH, Hostyn V, Slycken JV, Montagu MW, Boerjan W (2001) Dense genetic linkage maps of three Populus species (Populus deltoids, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158: 787-809.
6. Chen C, Bowman KD, Choi YA, Dang PM, Rao MN, Huang S, Soneji JR, McCollum TG, Gmitter FG Jr (2007) EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliate. Tree Genet Genomes 4: 1-10.
7. Dalkilic Z, Timmer LW, Gmitter FG (2005) Linkage of alternaria disease resistance gene in mandarin hybrids with RAPD fragments. JASHS 130: 191-195.
8. de Simone M, Russo MP, Puelo G, Marsan PA, Lorenzoni C, Marocco A, Recupero GR (1998) Construction genetic linkage maps for Citrus aurantium and C. latipes based on RFLP, RAPD RFLP markers. Fruits 53: 383-390.
9. Deng Z, Huang S, Ling P, Chen C, Yu C, Weber CA, Moore GA, Gmitter FG Jr (2000) Cloning and characterization of NBS-LRR class resistance-gene candidate sequences in citrus. Theor Appl Genet 101: 814-822.
10. Doucleff M, Yin Y, Gao F, Riaz S, Krivanek AF, Walker MA (2004) A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica. Theor Appl Genet 109: 1178-1187.
11. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
12. Fang DQ, Roose ML (1997) Identification of closely related citrus cultivars with inter-simple sequence repeat markers. Theor Appl Genet 95: 408-417.
13. Fang DQ, Federici CT, Roose ML (1997) Development of molecular markers linked to a gene controlling fruit acidity in Citrus. Genome 40: 841-849.
14. Fang DQ, Federici CT, Roose ML (1998) A high resolution linkage map of the citrus tristeza virus resistance gene region in Poncirus trifoliate (L.) Raf. Genetics 150: 883-890.
15. Fishman L, Kelly AJ, Morgan E, Willis JH (2001) A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159: 1701-1716.
16. Garcia R, Asins MJ, Carbonell EA (2000) QTL analysis of yield and seed number in Citrus. Theor Appl Genet 101: 487-493.
17. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudotestcross: mapping strategy and RAPD markers. Genetics 137: 1121-1137.
18. Guerra MS (1984) Cytogenetics of Rutaceae: II. Nuclear DNA content. Caryologia 37: 219-226.
19. Gulsen O, Roose ML (2001) Lemons: diversity and relationships with selected Citrus genotypes as measured with nuclear genome markers. JASHS 126: 309-317.
20. Gulsen O, Shearman RC, Vogel KP, Lee DJ, Baenziger PS, Heng-Moss TM, Budak H (2005) Nuclear genome diversity and relationships among naturally occurring buffalograss genotypes determined by sequence-related amplified polymorphism. HortScience 40: 537-541.
21. Gulsen O, Shearman RC, Heng-Moss TM, Mutlu N, Lee DJ, Sarath G (2007) Peroxidase gene polymorphism in buffalograss and other grasses. Crop Sci 47: 767-772.
22. Jarrell DC, Roose ML, Traugh SN, Kupper RS (1992) A genetic map of citrus based on the segregation of isozymes and RFLPs in an intergeneric cross. Theor Appl Genet 84: 49-56.
23. Kijas JMH, Thomas MR, Fowler JCS, Roose ML (1997) Integration of trinucleotide microsatellites into a linkage map of Citrus. Theor Appl Genet 94: 701-706.
24. Kohmoto K, Akimitsu K, Otani H (1991) Correlation of resistance and susceptibility of citrus to Alternaria alternata with sensitivity to host specific toxins. Phytopathology 81: 719-722.
25. Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103: 455-461.
26. Nicolosi E, Deng ZN, Gentile A, La Malfa S, Continella G, Tribulato E (2000) Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor Appl Genet 100: 1155-1166.
27. Oliveira RD, Cristofani M, Machado MA (2005) Integrated genetic map of Citrus based on RAPD markers. Fruits 60: 187-193.
28. Oliveira AC, Bastianel M, Cristofani-Yaly M, Amaral AM, Machado MA (2007) Development of genetic maps of the citrus varieties 'Murcott' tangor and Pera' sweet orange by using fluorescent AFLP markers. J Appl Genet 48: 219-231.
29. Roose ML (2000) Linkage mapping and marker-assisted selection in Citrus. Proceedings of the international society of citriculture. IX congress, Florida, USA, pp 69-70.
30. Roose ML (2007) Mapping and marker assisted selection in Citrus. In: Khan IA (ed) Citrus genetics, breeding and biotechnology. CAB International, Wallingford, UK, pp 275-286.
31. Ruiz C, Asins MJ (2003) Comparison between Poncirus and Citrus genetic linkage maps. Theor Appl Genet 106: 826-836.
32. Sankar AA, Moore GA (2001) Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theor Appl Genet 102: 206-214.
33. Soost RK, Roose ML (1996) Citrus. In: Janick J, Moore JN (eds) Fruit breeding, vol 1, pp 256-323.
34. Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Röder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps for tomato and potato genomes. Genetics 132: 1141-1160.
35. 1 populations. J Hered 87: 167-170.
36. Tozlu I, Guy CL, Moore GA (1999) QTL analysis of morphological traits in an intergeneric BC1 progeny of Citrus and Poncirus under saline and non-saline environments. Genome 42: 1020-1029.
37. Uzun A, Yesiloglu T, Aka-Kacar Y, Tuzcu O, Gulsen O (2009) Genetic diversity and population structure within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Sci Hortic 121: 306-312.
38. ® 4. 0, software for the calculation of genetic linkage maps in experimental populations. Kyazma B. V., Wageningen, Netherlands.
39. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. Heredity 93: 77-78.
40. Yamamoto M, Tominaga S (2004) Chromosome identification in haploid clementine (Citrus clementine hort. Ex Tanaka) by fluorescent staining. Sci Hortic 101: 201-206.
41. Zhang L, Pond SK, Gaut BS (2001) A survey of the molecular evolutionary dynamics of twenty-five multigene families from four taxa. Mol Evol 52: 144-156.