Synthesis and Assembly of Nanoparticles and Nanostructures Using Bio-Derived Templates

Nanobiotechnology II: More Concepts and Applications

Volumn , Issue , 2007, Pages 39-63

  Dujardin, Erik ^a   Mann, Stephen ^b  

^a CEMES CNRS   (France)

^b UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

Bio derived templates; DNA; Microorganisms; Nanobiotechnology; Nanoparticles; Nanostructures; Polysaccharides; Proteins; Self assembly; Synthesis; Synthetic peptides; Viruses

Indexed keywords

EID: 77953300585     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527610389.ch3     Document Type: Chapter

References (99)

1. Lehn, J. M. (2002) Toward complex matter: Supramolecular chemistry and self-organization. Proc. Natl. Acad. Sci. USA 99, 4763-4768.
2. Mann, S. (2001) Biomineralization. Principles and Concepts in Bioinorganic Materials Chemistry. Oxford University Press, Oxford, UK.
3. Thomas, A., Antonietti, M. (2003) Silica nanocasting of simple cellulose derivatives: Towards chiral pore systems with long-range order and chiral optical coatings. Adv. Function. Mater. 13, 763-766.
4. Dujardin, E., Blaseby, M., Mann, S. (2003) Synthesis of mesoporous silica by sol-gel mineralisation of cellulose nanorod nematic suspensions. J. Mater. Chem. 13, 696-699.
5. Numata, M., Li, C., Bae, A. H., Kaneko, K., Kazuo, S. C., Shinkai, S. (2005) beta-1,3-Glucan polysaccharide can act as a one-dimensional host to create novel silica nanofiber structures. Chem. Commun. 4655-4657.
6. Ogasawara, W., Shenton, W., Davis, S. A., Mann, S. (2000) Template mineralization of ordered macroporous chitin-silica composites using a cuttlebone-derived organic matrix. Chem. Mater. 12, 2835- 2837.
7. Reches, M., Gazit, E. (2003) Casting metal nanowires within discrete selfassembled peptide nanotubes. Science 300, 625-627.
8. Hartgerink, J. D., Beniash, E., Stupp, S. I. (2001) Self-assembly and mineralization of peptide-amphiphile nanofibers. Science 294, 1684-1688.
9. Keren, K., Krueger, M., Gilad, R., Ben-Yoseph, G., Sivan, U., Braun, E. (2002) Sequence-specific molecular lithography on single DNA molecules. Science 297, 72-75.
10. Mertig, M., Ciacchi, L. C., Seidel, R., Pompe, W., De Vita, A. (2002) DNA as a selective metallization template. Nano Lett. 2, 841-844.
11. Braun, E., Sivan, U. (2004) DNAtemplated electronics. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley-VCH, Weinheim, pp. 244-255.
12. Mertig, M., Pompe, W. (2004) Biomimetic fabrication of DNAbased metallic nanowires and networks. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley-VCH, Weinheim, pp. 256-277.
13. Gao, X. Y., Matsui, H. (2005) Peptidebased nanotubes and their applications in bionanotechnology. Adv. Mater. 17, 2037-2050.
14. Yu, L. T., Banerjee, I. A., Matsui, H. (2003) Direct growth of shapecontrolled nanocrystals on nanotubes via biological recognition. J. Am. Chem. Soc. 125, 14837-14840.
15. Banerjee, I. A., Yu, L. T., Matsui, H. (2003) Cu nanocrystal growth on peptide nanotubes by biomineralization: Size control of Cu nanocrystals by tuning peptide conformation. Proc. Natl. Acad. Sci. USA 100, 14678-14682.
16. Naik, R. R., Stringer, S. J., Agarwal, G., Jones, S. E., Stone, M. O. (2002) Biomimetic synthesis and patterning of silver nanoparticles. Nat. Mater. 1, 169-172.
17. Gao, X. Y., Djalali, R., Haboosheh, A., Samson, J., Nuraje, N., Matsui, H. (2005) Peptide nanotubes: Simple separation using size-exclusion columns and use as templates for fabricating one-dimensional single chains of an nanoparticles. Adv. Mater. 17, 1753-1757.
18. Zhao, X. J., Zhang, S. G. (2004) Fabrication of molecular materials using peptide construction motifs. Trends Biotechnol. 22, 470-476.
19. Lomander, A., Hwang, W. M., Zhang, S. G. (2005) Hierarchical selfassembly of a coiled-coil peptide into fractal structure. Nano Lett. 5, 1255-1260.
20. Ellis-Behnke, R. G., Liang, Y. X., You, S. W., Tay, D. K. C., Zhang, S. G., So, K. F., Schneider, G. E. (2006) Nano neuro knitting: Peptide nanofiber scaffold for brain repair and axon regeneration with functional return of vision. Proc. Natl. Acad. Sci. USA 103, 5054-5059.
21. Warner, M. G., Hutchison, J. E. (2003) Linear assemblies of nanoparticles electrostatically organized on DNA scaffolds. Nat. Mater. 2, 272-277.
22. Mirkin, C. A., Letsinger, R. L., Mucic, R. C., Storhoff, J. J. (1996) A DNAbased method for rationally assembling nanoparticles into macroscopic materials. Nature 382, 607-609.
23. Alivisatos, A. P., Johnsson, K. P., Peng, X. G., Wilson, T. E., Loweth, C. J., Bruchez, M. P., Schultz, P. G. (1996) Organization of 'nanocrystal molecules' using DNA. Nature 382, 609-611.
24. Seeman, N. C. (2004) Biomimetic fabrication of DNA-based metallic nanowires and networks. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley-VCH, Weinheim, pp. 308- 318.
25. Chen, J. H., Seeman, N. C. (1991) Synthesis from DNA of a molecule with the connectivity of a cube. Nature 350, 631-633.
26. Zhang, Y. W., Seeman, N. C. (1994) Construction of a DNA-truncated octahedron. J. Am. Chem. Soc. 116, 1661-1669.
27. Le, J. D., Pinto, Y., Seeman, N. C., Musier-Forsyth, K., Taton, T. A., Kiehl, R. A. (2004) DNA-templated self-assembly of metallic nano-component arrays on a surface. Nano Lett. 4, 2343-2347.
28. Dujardin, E., Hsin, L. B., Wang, C. R. C., Mann, S. (2001) DNA-driven self-assembly of gold nanorods. Chem. Commun. 1264-1265.
29. Sadasivan, S., Dujardin, E., Li, M., Johnson, C. J., Mann, S. (2005) DNAdriven assembly of mesoporous silica/gold satellite nanostructures. Small 1, 103-106.
30. Hamad-Schifferli, K., Schwartz, J. J., Santos, A. T., Zhang, S. G., Jacobson, J. M. (2002) Remote electronic control of DNA hybridization through inductive coupling to an attached metal nanocrystal antenna. Nature 415, 152-155.
31. Li, M., Dujardin, E., Mann, S. (2005) Programmed assembly of multilayered protein/nanoparticle-carbon nanotube conjugates. Chem. Commun. 4952-4954.
32. Li, M., Mann, S. (2004) DNA-directed assembly of multifunctional nanoparticle networks using metallic and bioinorganic building blocks. J. Mater. Chem. 14, 2260-2263.
33. Leveque, I., Cusack, M., Davis, S. A., Mann, S. (2004) Promotion of fluorapatite crystallization by solublematrix proteins from Lingula anatina shells. Angew. Chem. Int. Ed. 43, 885-888.
34. Patil, A. J., Muthusamy, E., Mann, S. (2004) Synthesis and self-assembly of organoclay-wrapped biomolecules. Angew. Chem. Int. Ed. 43, 4928-4933.
35. Ma, D., Li, M., Patil, A. J., Mann, S. (2004) Fabrication of protein/silica core-shell nanoparticles by microemulsion-based molecular wrapping. Adv. Mater. 16, 1838-1841.
36. Meldrum, F. C., Wade, V. J., Nimmo, D. L., Heywood, B. R., Mann, S. (1991) Synthesis of inorganic nanophase materials in supramolecular protein cages. Nature 349, 684-687.
37. Meldrum, F. C., Heywood, B. R., Mann, S. (1992) Magnetoferritin - In-vitro synthesis of a novel magnetic protein. Science 257, 522-523.
38. Mayes, E. L., Mann, S. (2004) Mineralization in nanostructured biocompartments: biomimetic ferritins for high-density data storage. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley- VCH, Weinheim, pp. 278-287.
39. Kim, J. W., Choi, S. H., Lillehei, P. T., Chu, S. H., King, G. C., Watt, G. D. (2005) Cobalt oxide hollow nanoparticles derived by bio-templating. Chem. Commun. 4101-4103.
40. Shenton, W., Mann, S., Colfen, H., Bacher, A., Fischer, M. (2001) Synthesis of nanophase iron oxide in lumazine synthase capsids. Angew. Chem. Int. Ed. 40, 442-445.
41. Allen, M., Willits, D., Young, M., Douglas, T. (2003) Constrained synthesis of cobalt oxide nanomaterials in the 12-subunit protein cage from Listeria innocua. Inorg. Chem. 42, 6300-6305.
42. Varpness, Z., Peters, J. W., Young, M., Douglas, T. (2005) Biomimetic synthesis of a H-2 catalyst using a protein cage architecture. Nano Lett. 5, 2306-2309.
43. Flenniken, M. L., Willits, D. A., Brumfield, S., Young, M. J., Douglas, T. (2003) The small heat shock protein cage from Methanococcus jannaschii is a versatile nanoscale platform for genetic and chemical modification. Nano Lett. 3, 1573-1576.
44. Sano, K., Ajima, K., Iwahori, K., Yudasaka, M., Iijima, S., Yamashita, I., Shiba, K. (2005) Endowing a ferritin-like cage protein with high affinity and selectivity for certain inorganic materials. Small 1, 826-832.
45. Scheibel, T., Parthasarathy, R., Sawicki, G., Lin, X. M., Jaeger, H., Lindquist, S. L. (2003) Conducting nanowires built by controlled selfassembly of amyloid fibers and selective metal deposition. Proc. Natl. Acad. Sci. USA 100, 4527- 4532.
46. Sleytr, U. B., Egelseer, E. M., Pum, D., Schuster, B. (2004) S-layers. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept,Applications and Perspectives. Wiley- VCH, Weinheim, pp. 77-92.
47. Shenton, W., Pum, D., Sleytr, U. B., Mann, S. (1997) Synthesis of cadmium sulphide superlattices using self-assembled bacterial S-layers. Nature 389, 585-587.
48. Wahl, R., Mertig, M., Raff, J., Selenska-Pobell, S., Pompe, W. (2001) Electron-beam induced formation of highly ordered palladium and platinum nanoparticle arrays on the S layer of Bacillus sphaericus NCTC 9602. Adv. Mater. 13, 736-740.
49. Hall, S. R., Shenton, W., Engelhardt, H., Mann, S. (2001) Site-specific organization of gold nanoparticles by biomolecular templating. Chemphyschem 2, 184-186.
50. Moll, D., Huber, C., Schlegel, B., Pum, D., Sleytr, U. B., Sara, M. (2002) S-layer-streptavidin fusion proteins as template for nanopatterned molecular arrays. Proc. Natl. Acad. Sci. USA 99, 14646-14651.
51. McMillan, R. A., Paavola, C. D., Howard, J., Chan, S. L., Zaluzec, N. J., Trent, J. D. (2002) Ordered nanoparticle arrays formed on engineered chaperonin protein templates. Nat. Mater. 1, 247-252.
52. Shenton, W., Davis, S. A., Mann, S. (1999) Directed self-assembly of nanoparticles into macroscopic materials using antibody-antigen recognition. Adv. Mater. 11, 449- 452.
53. Connolly, S., Fitzmaurice, D. (1999) Programmed assembly of gold nanocrystals in aqueous solution. Adv. Mater. 11, 1202-1205.
54. Li, M., Wong, K. K. W., Mann, S. (1999) Organization of inorganic nanoparticles using biotinstreptavidin connectors. Chem. Mater. 11, 23-26.
55. Douglas, T., Young, M. (1998) Hostguest encapsulation of materials by assembled virus protein cages. Nature 393, 152-155.
56. Douglas, T., Young, M. (1999) Virus particles as templates for materials synthesis. Adv. Mater. 11, 679-681.
57. Shenton, W., Douglas, T., Young, M., Stubbs, G., Mann, S. (1999) Inorganic-organic nanotube composites from template mineralization of tobacco mosaic virus. Adv. Mater. 11, 253-256.
58. Dujardin, E., Peet, C., Stubbs, G., Culver, J. N., Mann, S. (2003) Organization of metallic nanoparticles using tobacco mosaic virus templates. Nano Lett. 3, 413-417.
59. Knez, M., Bittner, A. M., Boes, F., Wege, C., Jeske, H., Maiss, E., Kern, K. (2003) Biotemplate synthesis of 3-nm nickel and cobalt nanowires. Nano Lett. 3, 1079-1082.
60. Knez, M., Sumser, M., Bittner, A. M., Wege, C., Jeske, H., Martin, T. P., Kern, K. (2004) Spatially selective nucleation of metal clusters on the tobacco mosaic virus. Adv. Function. Mater. 14, 116-124.
61. Gillitzer, E., Willits, D., Young, M., Douglas, T. (2002) Chemical modification of a viral cage for multivalent presentation. Chem. Commun. 2390-2391.
62. Wang, Q., Lin, T. W., Tang, L., Johnson, J. E., Finn, M. G. (2002) Icosahedral virus particles as addressable nanoscale building blocks. Angew. Chem. Int. Ed. 41, 459-462.
63. Chatterji, A., Ochoa, W., Shamieh, L., Salakian, S. P., Wong, S. M., Clinton, G., Ghosh, P., Lin, T. W., Johnson, J. E. (2004) Chemical conjugation of heterologous proteins on the surface of cowpea mosaic virus. Bioconj. Chem. 15, 807-813.
64. Hooker, J. M., Kovacs, E. W., Francis, M. B. (2004) Interior surface modification of bacteriophage MS2. J. Am. Chem. Soc. 126, 3718-3719.
65. Douglas, T., Strable, E., Willits, D., Aitouchen, A., Libera, M., Young, M. (2002) Protein engineering of a viral cage for constrained nanomaterials synthesis. Adv. Mater. 14, 415-418.
66. Mao, C. B., Flynn, C. E., Hayhurst, A., Sweeney, R., Qi, J. F., Georgiou, G., Iverson, B., Belcher, A. M. (2003) Viral assembly of oriented quantum dot nanowires. Proc. Natl. Acad. Sci. USA 100, 6946-6951.
67. Mao, C. B., Solis, D. J., Reiss, B. D., Kottmann, S. T., Sweeney, R. Y., Hayhurst, A., Georgiou, G., Iverson, B., Belcher, A. M. (2004) Virusbased toolkit for the directed synthesis of magnetic and semiconducting nanowires. Science 303, 213-217.
68. Brown, S. (1992) Engineered iron oxide-adhesion mutants of the Escherichia coli phage-lambda receptor. Proc. Natl. Acad. Sci. USA 89, 8651-8655.
69. Brown, S. (2004) Genetic approaches to programmed assembly. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley-VCH, Weinheim, pp. 113-125.
70. Whaley, S. R., English, D. S., Hu, E. L., Barbara, P. F., Belcher, A. M. (2000) Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly. Nature 405, 665-668.
71. Lee, S. W., Mao, C. B., Flynn, C. E., Belcher, A. M. (2002) Ordering of quantum dots using genetically engineered viruses. Science 296, 892-895.
72. Lee, S. W., Wood, B. M., Belcher, A. M. (2003) Chiral smectic C structures of virus-based films. Langmuir 19, 1592-1598.
73. Lee, S. W., Lee, S. K., Belcher, A. M. (2003) Virus-based alignment of inorganic, organic, and biological nanosized materials. Adv. Mater. 15, 689-692.
74. Blum, A. S., Soto, C. M., Wilson, C. D., Cole, J. D., Kim, M., Gnade, B., Chatterji, A., Ochoa, W. F., Lin, T. W., Johnson, J. E., et al. (2004) Cowpea mosaic virus as a scaffold for 3-D patterning of gold nanoparticles. Nano Lett. 4, 867-870.
75. Blum, A. S., Soto, C. M., Wilson, C. D., Brower, T. L., Pollack, S. K., Schull, T. L., Chatterji, A., Lin, T. W., Johnson, J. E., Amsinck, C., et al. (2005) An engineered virus as a scaffold for three-dimensional selfassembly on the nanoscale. Small 1, 702-706.
76. Chatterji, A., Ochoa, W. F., Ueno, T., Lin, T. W., Johnson, J. E. (2005) A virus-based nanoblock with tunable electrostatic properties. Nano Lett. 5, 597-602.
77. Medintz, I. L., Sapsford, K. E., Konnert, J. H., Chatterji, A., Lin, T. W., Johnson, J. E., Mattoussi, H. (2005) Decoration of discretely immobilized cowpea mosaic virus with luminescent quantum dots. Langmuir 21, 5501-5510.
78. Perez, J. M., Simeone, F. J., Saeki, Y., Josephson, L., Weissleder, R. (2003) Viral-induced self-assembly of magnetic nanoparticles allows the detection of viral particles in biological media. J. Am. Chem. Soc. 125, 10192-10193.
79. Fowler, C. E., Shenton, W., Stubbs, G., Mann, S. (2001) Tobacco mosaic virus liquid crystals as templates for the interior design of silica mesophases and nanoparticles. Adv. Mater. 13, 1266-1269.
80. Falkner, J. C., Turner, M. E., Bosworth, J. K., Trentler, T. J., Johnson, J. E., Lin, T. W., Colvin, V. L. (2005) Virus crystals as nanocomposite scaffolds. J. Am. Chem. Soc. 127, 5274-5275.
81. Strable, E., Johnson, J. E., Finn, M. G. (2004) Natural nanochemical building blocks: Icosahedral virus particles organized by attached oligonucleotides. Nano Lett. 4, 1385-1389.
82. Cheung, C. L., Camarero, J. A., Woods, B. W., Lin, T. W., Johnson, J. E., De Yoreo, J. J. (2003) Fabrication of assembled virus nanostructures on templates of chemoselective linkers formed by scanning probe nanolithography. J. Am. Chem. Soc. 125, 6848-6849.
83. Smith, J. C., Lee, K. B., Wang, Q., Finn, M. G., Johnson, J. E., Mrksich, M., Mirkin, C. A. (2003) Nanopatterning the chemospecific immobilization of cowpea mosaic virus capsid. Nano Lett. 3, 883-886.
84. Flynn, C. E., Lee, S. W., Peelle, B. R., Belcher, A. M. (2003) Viruses as vehicles for growth, organization and assembly of materials. Acta Materialia 51, 5867-5880.
85. Dujardin, E., Mann, S. (2002) Bioinspired materials chemistry. Adv. Mater. 14, 775-788.
86. Davis, S. A., Burkett, S. L., Mendelson, N. H., Mann, S. (1997) Bacterial templating of ordered macrostructures in silica and silicasurfactant mesophases. Nature 385, 420-423.
87. Sastry, M., Ahmad, A., Khan, A. M., Kumar, R. (2004) Microbial nanoparticle production. In: Niemeyer, C. M. and Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley- VCH, Weinheim, pp. 126-135.
88. Lower, S. K., Hochella, M. F., Beveridge, T. J. (2001) Bacterial recognition of mineral surfaces: Nanoscale interactions between Shewanella and alpha-FeOOH. Science 292, 1360-1363.
89. Beveridge, T. J. and Murray, R. G. E. (1980) Sites of metal deposition in the cell wall of Bacillus subtilis. J. Bacteriol. 141, 876-887.
90. Frankel, R. B., Bazylinski, D. A. (2004) Magnetosomes: Nanoscale magnetic iron minerals in bacteria. In: Niemeyer, C. M., Mirkin, C. A. (Eds.), Nanobiotechnology. Concept, Applications and Perspectives. Wiley- VCH, Weinheim, pp. 136-145.
91. Chan, C. S., De Stasio, G., Welch, S. A., Girasole, M., Frazer, B. H., Nesterova, M. V., Fakra, S., Banfield, J. F. (2004) Microbial polysaccharides template assembly of nanocrystal fibers. Science 303, 1656-1658.
92. Dubertret, B., Skourides, P., Norris, D. J., Noireaux, V., Brivanlou, A. H., Libchaber, A. (2002) In vivo imaging of quantum dots encapsulated in phospholipid micelles. Science 298, 1759-1762.
93. Sweeney, R. Y., Mao, C. B., Gao, X. X., Burt, J. L., Belcher, A. M., Georgiou, G., Iverson, B. L. (2004) Bacterial biosynthesis of cadmium sulfide nanocrystals. Chem. Biol. 11, 1553-1559.
94. Li, Z., Chung, S. W., Nam, J. M., Ginger, D. S., Mirkin, C. A. (2003) Living templates for the merarchical assembly of gold nanoparticles. Angew. Chem. Int. Ed. 42, 2306-2309.
95. Hyrup, B., Nielsen, P. E. (1996) Peptide nucleic acids (PNA): Synthesis, properties and potential applications. Bioorg. Medicinal Chem. 4, 5-23.
96. Lehn, J. M. (2005) Dynamers: dynamic molecular and supramolecular polymers. Progress Polymer Sci. 30, 814-831.
97. Fogleman, E. A., Yount, W. C., Xu, J., Craig, S. L. (2002) Modular, wellbehaved reversible polymers from DNA-based monomers. Angew. Chem. Int. Ed. 41, 4026-4028.
98. Ramstrom, O., Bunyapaiboonsri, T., Lohmann, S., Lehn, J. M. (2002) Chemical biology of dynamic combinatorial libraries. Biochim. Biophys. Acta-General Subjects 1572, 178-186.
99. Ramstrom, O., Lehn, J. M. (2000) In situ generation and screening of a dynamic combinatorial carbohydrate library against concanavalin A. Chembiochem 1, 41-48.