메뉴 건너뛰기




Volumn 63, Issue 3, 2010, Pages 701-716

Phylogenetic analysis of protein sequences based on conditional LZ complexity

Author keywords

[No Author keywords available]

Indexed keywords


EID: 77953282732     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (20)

References (30)
  • 2
    • 33748808998 scopus 로고    scopus 로고
    • Protein-based phylogenetic analysis by using hydropathy profile of amino acids
    • N. Liu, T. Wang, Protein-based phylogenetic analysis by using hydropathy profile of amino acids, FEBS Lett. 580 (2006) 5321-5327.
    • (2006) Febs Lett. , vol.580 , pp. 5321-5327
    • Liu, N.1    Wang, T.2
  • 3
    • 67249156619 scopus 로고    scopus 로고
    • Alignment-free comparison of protein sequences based on reduced amino acid alphabets
    • C. Jia, T. Liu, X. Zhang, H. Fu, Q. Yang, Alignment-free comparison of protein sequences based on reduced amino acid alphabets, J. Biomol. Str. Dyn. 6 (2009) 26-32.
    • (2009) J. Biomol. Str. Dyn , vol.6 , pp. 26-32
    • Jia, C.1    Liu, T.2    Zhang, X.3    Fu, H.4    Yang, Q.5
  • 4
    • 0034945722 scopus 로고    scopus 로고
    • Phylogenetic analysis based on 18S rRNA gene and matK gene sequences of Panax vietnamensis and five related species
    • K. Komatsu, S. Zhu, H. Fushimi, T. K. Qui, S. Cai, S. Kadota, Phylogenetic analysis based on 18S rRNA gene and matK gene sequences of Panax vietnamensis and five related species, Planta Med. 67 (2001) 461-465.
    • (2001) Planta Med. , vol.67 , pp. 461-465
    • Komatsu, K.1    Zhu, S.2    Fushimi, H.3    Qui, T.K.4    Cai, S.5    Kadota, S.6
  • 5
    • 33750030429 scopus 로고    scopus 로고
    • A tabu search algorithm for maximum parsimony phytogeny inference
    • Y. Lin, S. Fang, J. Thorne, A tabu search algorithm for maximum parsimony phytogeny inference, Eur. J. Oper. Res. 176 (2007) 1908-1917.
    • (2007) Eur. J. Oper. Res. , vol.176 , pp. 1908-1917
    • Lin, Y.1    Fang, S.2    Thorne, J.3
  • 6
    • 67249107923 scopus 로고    scopus 로고
    • A likelihood look at the supermatrix-supertree controversy
    • F. Ren, H. Tanaka, Z. Yang, A likelihood look at the supermatrix- supertree controversy, Gene. 441 (2009) 119-125.
    • (2009) Gene , vol.441 , pp. 119-125
    • Ren, F.1    Tanaka, H.2    Yang, Z.3
  • 7
    • 70349207042 scopus 로고    scopus 로고
    • ML or NJ-MCL? A comparison between two robust phylogenetic methods
    • A. Som, ML or NJ-MCL? A comparison between two robust phylogenetic methods, Comput. Biol. Chem. 33 (2009) 373-378.
    • (2009) Comput. Biol. Chem. , vol.33 , pp. 373-378
    • Som, A.1
  • 8
    • 33749452415 scopus 로고    scopus 로고
    • In silico identification and bayesian phylogenetic analysis of multiple new mammalian kallikrein gene families
    • M. B. Elliott, D. M. Irwin, E. P. Diamandis, In silico identification and bayesian phylogenetic analysis of multiple new mammalian kallikrein gene families, Genomics. 88 (2006) 591-599.
    • (2006) Genomics , vol.88 , pp. 591-599
    • Elliott, M.B.1    Irwin, D.M.2    Diamandis, E.P.3
  • 9
    • 67649982908 scopus 로고    scopus 로고
    • BOOL-AN: A method for comparative sequence analysis and phylogenetic reconstruction
    • E. Jako, E. Ari, P. Ittzes, A. Horvath, J. Podani, BOOL-AN: A method for comparative sequence analysis and phylogenetic reconstruction, Mol. Phy. Evol. 52 (2009) 887-897.
    • (2009) Mol. Phy. Evol , vol.52 , pp. 887-897
    • Jako, E.1    Ari, E.2    Ittzes, P.3    Horvath, A.4    Podani, J.5
  • 10
    • 33645883236 scopus 로고    scopus 로고
    • Coronavirus phytogeny based on triplets of nucleic acids bases
    • B. Liao, Y. Liu, R. Li, W. Zhu, Coronavirus phytogeny based on triplets of nucleic acids bases, Chem. Phys. Lett. 421 (2006) 313-318.
    • (2006) Chem. Phys. Lett. , vol.421 , pp. 313-318
    • Liao, B.1    Liu, Y.2    Li, R.3    Zhu, W.4
  • 11
    • 33745892626 scopus 로고    scopus 로고
    • Coronavirus phytogeny based on 2D graphical representation of DNA sequence
    • B. Liao, X. Xiang, W. Zhu, Coronavirus phytogeny based on 2D graphical representation of DNA sequence, J. Comput. Chem. 27 (2006) 1196-1202.
    • (2006) J. Comput. Chem. , vol.27 , pp. 1196-1202
    • Liao, B.1    Xiang, X.2    Zhu, W.3
  • 12
    • 33646066834 scopus 로고    scopus 로고
    • Phylogenetic tree construction based on 2D graphical representation
    • B. Liao, X. Shan, W. Zhu, R. Li, Phylogenetic tree construction based on 2D graphical representation, Chem. Phys. Lett. 422 (2006) 282-288.
    • (2006) Chem. Phys. Lett. , vol.422 , pp. 282-288
    • Liao, B.1    Shan, X.2    Zhu, W.3    Li, R.4
  • 13
    • 43949140543 scopus 로고    scopus 로고
    • A group of 3D graphical representation of DNA sequences based on dual nucleotides
    • Z. Cao, B. Liao, R. Li, A group of 3D graphical representation of DNA sequences based on dual nucleotides, Int. J. Quantum. Chem. 108 (2008) 1485-1490.
    • (2008) Int. J. Quantum. Chem. , vol.108 , pp. 1485-1490
    • Cao, Z.1    Liao, B.2    Li, R.3
  • 14
    • 67249144770 scopus 로고    scopus 로고
    • A new method to analyze the similarity based on dual nucleotides of the DNA sequence
    • Z. Liu, B. Liao, W. Zhu, A new method to analyze the similarity based on dual nucleotides of the DNA sequence, MATCH Commun. Math. Comput. Chem. 61 (2009) 541-552.
    • (2009) Match Commun. Math. Comput. Chem. , vol.61 , pp. 541-552
    • Liu, Z.1    Liao, B.2    Zhu, W.3
  • 15
    • 77951115650 scopus 로고    scopus 로고
    • A novel method for constructing phylogenetic tree based on a dissimilarity matrix
    • W. Zhu, B. Liao, R. Li, A novel method for constructing phylogenetic tree based on a dissimilarity matrix, MATCH Commun. Math. Comput. Chem. 63 (2010) 483-492.
    • (2010) Match Commun. Math. Comput. Chem. , vol.63 , pp. 483-492
    • Zhu, W.1    Liao, B.2    Li, R.3
  • 17
    • 67650747278 scopus 로고    scopus 로고
    • Use of information discrepancy measure to compare protein secondary structures
    • S. Zhang, L. Yang, T. Wang, Use of information discrepancy measure to compare protein secondary structures, J. Mol. Struct. (Theochem) 909 (2009) 102-106.
    • (2009) J. Mol. Struct. (Theochem) , vol.909 , pp. 102-106
    • Zhang, S.1    Yang, L.2    Wang, T.3
  • 18
    • 67349149652 scopus 로고    scopus 로고
    • A simple method for phylogenomic inference using the information of gene content of genomes
    • H. Zhang, Y. Zhong, B. Hao, X. Gu, A simple method for phylogenomic inference using the information of gene content of genomes, Gene. 441 (2009) 163-168.
    • (2009) Gene , vol.441 , pp. 163-168
    • Zhang, H.1    Zhong, Y.2    Hao, B.3    Gu, X.4
  • 19
    • 26844494956 scopus 로고    scopus 로고
    • Fractal and dynamical language methods to construct phylogenetic tree based on protein sequences from complete genomes
    • Z. Yu, V. Anh, L. Zhou, Fractal and dynamical language methods to construct phylogenetic tree based on protein sequences from complete genomes, Advances in Natural Computation. PT3, Proceedings. 3612 (2005) 337-347.
    • (2005) Advances in Natural Computation. PT3, Proceedings , vol.3612 , pp. 337-347
    • Yu, Z.1    Anh, V.2    Zhou, L.3
  • 20
    • 1842535438 scopus 로고    scopus 로고
    • Utilization of the relative complexity measure to construct a phylogenetic tree for fungi
    • D. R. Bastola, H. H. Otu, S. E. Doukas, K. Sayood, S. H. Hinrichs, P. C. Iwen, Utilization of the relative complexity measure to construct a phylogenetic tree for fungi, Mycol. Res. 108 (2004) 117-125.
    • (2004) Mycol. Res. , vol.108 , pp. 117-125
    • Bastola, D.R.1    Otu, H.H.2    Doukas, S.E.3    Sayood, K.4    Hinrichs, S.H.5    Iwen, P.C.6
  • 21
    • 0345256581 scopus 로고    scopus 로고
    • Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
    • Z. Yu, V. Anh, K. Lau, Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses, J. Theor. Biol. 226 (2004) 341-348.
    • (2004) J. Theor. Biol. , vol.226 , pp. 341-348
    • Yu, Z.1    Anh, V.2    Lau, K.3
  • 22
    • 0016880887 scopus 로고
    • On the complexity of finite sequences
    • A. Lempel, J. Ziv, On the complexity of finite sequences, IEEE Trans. Inform. Theory 22 (1976) 75-81.
    • (1976) Ieee Trans. Inform. Theory , vol.22 , pp. 75-81
    • Lempel, A.1    Ziv, J.2
  • 23
    • 0242643741 scopus 로고    scopus 로고
    • A new sequence distance measure for phylogenetic tree construction
    • H. H. Otu, K. Sayood, A new sequence distance measure for phylogenetic tree construction, Bioinformatics 19 (2003) 2122-2130.
    • (2003) Bioinformatics , vol.19 , pp. 2122-2130
    • Otu, H.H.1    Sayood, K.2
  • 24
    • 33745009759 scopus 로고    scopus 로고
    • LZ complexity distance of DNA sequence and its application in phyligenetic tree reconstruction
    • B. Li, Y. Li, H. He, LZ complexity distance of DNA sequence and its application in phyligenetic tree reconstruction, Geno. Prot. Bioinfo. 3 (2005) 206-212.
    • (2005) Geno. Prot. Bioinfo , vol.3 , pp. 206-212
    • Li, B.1    Li, Y.2    He, H.3
  • 25
    • 39149105621 scopus 로고    scopus 로고
    • Comparison of TOPS strings based on LZ complexity
    • L. Liu, T. Wang, Comparison of TOPS strings based on LZ complexity, J. Theor. Biol. 251 (2008) 159-166.
    • (2008) J. Theor. Biol. , vol.251 , pp. 159-166
    • Liu, L.1    Wang, T.2
  • 26
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • J. Felsenstein, PHYLIP-phylogeny inference package (version 3.2), Cladistics 5 (1989) 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 27
    • 0035057075 scopus 로고    scopus 로고
    • Molecular evolution of transferrin: Evidence for positive selection in salmonids
    • M. Ford, Molecular evolution of transferrin: Evidence for positive selection in salmonids, Mol. Biol. Evol. 18 (2001) 639-647.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 639-647
    • Ford, M.1
  • 28
    • 33846592954 scopus 로고    scopus 로고
    • Analysis of protein sequences and their secondary structures based on transition matrices
    • Q. Dai, X. Liu, T. Wang, Analysis of protein sequences and their secondary structures based on transition matrices, J. Mol. Struct. (Theochem) 803 (2007) 115-122.
    • (2007) J. Mol. Struct. (Theochem) , vol.803 , pp. 115-122
    • Dai, Q.1    Liu, X.2    Wang, T.3
  • 29
    • 0035102453 scopus 로고    scopus 로고
    • An informationbased sequence distance and its application to whole mitochondrial genome phylogeny
    • M. Li, J. H. Badger, X. Chen, S. Kwong, P. Kearney, H. Zhang, An informationbased sequence distance and its application to whole mitochondrial genome phylogeny, Bioinformatics 17 (2001) 149-154.
    • (2001) Bioinformatics , vol.17 , pp. 149-154
    • Li, M.1    Badger, J.H.2    Chen, X.3    Kwong, S.4    Kearney, P.5    Zhang, H.6
  • 30
    • 4544263561 scopus 로고    scopus 로고
    • A weighted least-squares approach for inferring phylogenies from incomplete distance matrices
    • V. Makarenkov, F. Lapointe, A weighted least-squares approach for inferring phylogenies from incomplete distance matrices, Bioinformatics 20 (2004) 2113-2121.
    • (2004) Bioinformatics , vol.20 , pp. 2113-2121
    • Makarenkov, V.1    Lapointe, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.