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Volumn 3, Issue 4, 2005, Pages 206-212

LZ complexity distance of DNA sequences and its application in phylogenetic tree reconstruction

Author keywords

Bioinformatics; Conditional LZ complexity; LZ complexity distance; Phylogenetic tree reconstruction; Sequence complexity

Indexed keywords

MITOCHONDRIAL DNA;

EID: 33745009759     PISSN: 16720229     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-0229(05)03028-7     Document Type: Article
Times cited : (11)

References (20)
  • 3
    • 0003496754 scopus 로고    scopus 로고
    • Misener, S. and Krawetz, S.A. (eds.). Humana Press, Totowa, USA
    • Misener, S. and Krawetz, S.A. (eds.) 2000. Bioinformatics: Methods and Protocols. Humana Press, Totowa, USA.
    • (2000) Bioinformatics: Methods and Protocols
  • 4
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison - A review
    • Vinga, S. and Almeida, J. 2003. Alignment-free sequence comparison-a review. Bioinformatics 19: 513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 6
    • 0035102453 scopus 로고    scopus 로고
    • An information-based sequence distance and its application to whole mitochondrial genome phylogeny
    • Li, M., et al. 2001. An information-based sequence distance and its application to whole mitochondrial genome phylogeny. Bioinformatics 17: 149-154.
    • (2001) Bioinformatics , vol.17 , pp. 149-154
    • Li, M.1
  • 7
    • 0001941057 scopus 로고    scopus 로고
    • A compression algorithm for DNA sequences and its applications in genome comparison
    • Chen, X., et al. 1999. A compression algorithm for DNA sequences and its applications in genome comparison. Genome Inform. Ser. Workshop Genome Inform. 10: 51-61.
    • (1999) Genome Inform. Ser. Workshop Genome Inform. , vol.10 , pp. 51-61
    • Chen, X.1
  • 8
    • 20744444195 scopus 로고    scopus 로고
    • DNA data compression in the post genome era
    • Sato, H., et al. 2001. DNA data compression in the post genome era. Genome Informatics 12: 512-514.
    • (2001) Genome Informatics , vol.12 , pp. 512-514
    • Sato, H.1
  • 9
    • 0016880887 scopus 로고
    • On the complexity of finite sequences
    • Lempel, A. and Ziv, J. 1976. On the complexity of finite sequences. IEEE Trans. Inf. Theory 22: 75-81.
    • (1976) IEEE Trans. Inf. Theory , vol.22 , pp. 75-81
    • Lempel, A.1    Ziv, J.2
  • 10
    • 35949011257 scopus 로고
    • Easily calculable measure for the complexity of spatiotemporal patterns
    • Kaspar, F. and Schuster, H.G. 1987. Easily calculable measure for the complexity of spatiotemporal patterns. Phys. Rev. A 36: 842-848.
    • (1987) Phys. Rev. A , vol.36 , pp. 842-848
    • Kaspar, F.1    Schuster, H.G.2
  • 11
    • 0034117084 scopus 로고    scopus 로고
    • Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris
    • Reyes, A., et al. 2000. Where do rodents fit? Evidence from the complete mitochondrial genome of Sciurus vulgaris. Mol. Biol. Evol. 17: 979-983.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 979-983
    • Reyes, A.1
  • 12
    • 0031694349 scopus 로고    scopus 로고
    • Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders
    • Cao, Y., et al. 1998. Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders. J. Mol. Evol. 47: 307-322.
    • (1998) J. Mol. Evol. , vol.47 , pp. 307-322
    • Cao, Y.1
  • 13
    • 0031026266 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
    • Janke, A., et al. 1997. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria. Proc. Natl. Acad. Sci. USA 94: 1276-1281.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1276-1281
    • Janke, A.1
  • 14
    • 0027992767 scopus 로고
    • Mammalian phylogeny inferred from multiple protein data
    • Kuma, K. and Miyata, T. 1994. Mammalian phylogeny inferred from multiple protein data. Jpn. J. Genet. 69: 555-566.
    • (1994) Jpn. J. Genet. , vol.69 , pp. 555-566
    • Kuma, K.1    Miyata, T.2
  • 15
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic tress
    • Satton, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic tress. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Satton, N.1    Nei, M.2
  • 16
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (version 3.2)
    • Felsenstein, J. 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 17
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R.D. 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 18
    • 0031116019 scopus 로고    scopus 로고
    • Phylogenetic position of guinea pigs revisited
    • Cao, Y., et al. 1997. Phylogenetic position of guinea pigs revisited. Mol. Biol. Evol. 14: 461-464.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 461-464
    • Cao, Y.1
  • 19
    • 0002618746 scopus 로고    scopus 로고
    • Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics
    • Sullivan, J. and Swofford, D.L. 1997. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. J. Mammal. Evol. 4: 77-86.
    • (1997) J. Mammal. Evol. , vol.4 , pp. 77-86
    • Sullivan, J.1    Swofford, D.L.2
  • 20
    • 0031947856 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly
    • Reyes, A., et al. 1998. Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: further evidence of rodent paraphyly. Mol. Biol. Evol. 15: 499-505.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 499-505
    • Reyes, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.