메뉴 건너뛰기




Volumn 88, Issue 5, 2006, Pages 591-599

In silico identification and Bayesian phylogenetic analysis of multiple new mammalian kallikrein gene families

Author keywords

Bayesian analysis; Gene duplication; Gene families; Kallikreins; Phylogenetics

Indexed keywords

KALLIKREIN; KALLIKREIN 11; KALLIKREIN 14; KALLIKREIN 15; KALLIKREIN 2; KALLIKREIN 3; KALLIKREIN 4; KALLIKREIN 5; KALLIKREIN 9; NEUROPSIN; PROSTATE SPECIFIC ANTIGEN; UNCLASSIFIED DRUG;

EID: 33749452415     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2006.06.001     Document Type: Article
Times cited : (35)

References (43)
  • 1
    • 0043264142 scopus 로고    scopus 로고
    • An overview of the kallikrein gene families in humans and other species: emerging candidate tumour markers
    • Yousef G.M., and Diamandis E.P. An overview of the kallikrein gene families in humans and other species: emerging candidate tumour markers. Clin. Biochem 36 (2003) 443-452
    • (2003) Clin. Biochem , vol.36 , pp. 443-452
    • Yousef, G.M.1    Diamandis, E.P.2
  • 2
    • 0036436683 scopus 로고    scopus 로고
    • Organization and evolution of the glandular kallikrein locus in Mus musculus
    • Olsson A.Y., and Lundwall A. Organization and evolution of the glandular kallikrein locus in Mus musculus. Biochem. Biophys. Res. Commun. 299 (2002) 305-311
    • (2002) Biochem. Biophys. Res. Commun. , vol.299 , pp. 305-311
    • Olsson, A.Y.1    Lundwall, A.2
  • 4
    • 2942588827 scopus 로고    scopus 로고
    • Taxon-specific evolution of glandular kallikrein genes and identification of a progenitor of prostate-specific antigen
    • Olsson A.Y., Lilja H., and Lundwall A. Taxon-specific evolution of glandular kallikrein genes and identification of a progenitor of prostate-specific antigen. Genomics 84 (2004) 147-156
    • (2004) Genomics , vol.84 , pp. 147-156
    • Olsson, A.Y.1    Lilja, H.2    Lundwall, A.3
  • 5
    • 0027956777 scopus 로고
    • Characterization of kallikrein cDNAs from the African rodent Mastomys
    • Fahnestock M. Characterization of kallikrein cDNAs from the African rodent Mastomys. DNA Cell Biol. 13 (1994) 293-300
    • (1994) DNA Cell Biol. , vol.13 , pp. 293-300
    • Fahnestock, M.1
  • 6
    • 0027299630 scopus 로고
    • Molecular cloning and sequence analysis of the monkey and human tissue kallikrein genes
    • Lin F.K., Lin C.H., Chou C.C., Chen K., Lu H.S., Bacheller W., et al. Molecular cloning and sequence analysis of the monkey and human tissue kallikrein genes. Biochim. Biophys. Acta 1173 (1993) 325-328
    • (1993) Biochim. Biophys. Acta , vol.1173 , pp. 325-328
    • Lin, F.K.1    Lin, C.H.2    Chou, C.C.3    Chen, K.4    Lu, H.S.5    Bacheller, W.6
  • 8
    • 0026096483 scopus 로고
    • Characterization and expression of the prostatic arginine esterase gene, a canine glandular kallikrein
    • Chapdelaine P., Gauthier E., Ho-Kim M.A., Bissonnette L., Tremblay R.R., and Dube J.Y. Characterization and expression of the prostatic arginine esterase gene, a canine glandular kallikrein. DNA Cell Biol. 10 (1991) 49-59
    • (1991) DNA Cell Biol. , vol.10 , pp. 49-59
    • Chapdelaine, P.1    Gauthier, E.2    Ho-Kim, M.A.3    Bissonnette, L.4    Tremblay, R.R.5    Dube, J.Y.6
  • 9
    • 0032904902 scopus 로고    scopus 로고
    • Not more than three tissue kallikreins identified from organs of the guinea pig
    • Fiedler F., Betz G., Hinz H., Lottspeich F., Raidoo D.M., and Bhoola K.D. Not more than three tissue kallikreins identified from organs of the guinea pig. Biol. Chem. 380 (1999) 63-73
    • (1999) Biol. Chem. , vol.380 , pp. 63-73
    • Fiedler, F.1    Betz, G.2    Hinz, H.3    Lottspeich, F.4    Raidoo, D.M.5    Bhoola, K.D.6
  • 10
    • 0029024694 scopus 로고
    • The presence of prostate-specific antigen-related genes in primates and the expression of recombinant human prostate-specific antigen in a transfected murine cell line
    • Karr J.F., Kantor J.A., Hand P.H., Eggensperger D.L., and Schlom J. The presence of prostate-specific antigen-related genes in primates and the expression of recombinant human prostate-specific antigen in a transfected murine cell line. Cancer Res. 55 (1995) 2455-2462
    • (1995) Cancer Res. , vol.55 , pp. 2455-2462
    • Karr, J.F.1    Kantor, J.A.2    Hand, P.H.3    Eggensperger, D.L.4    Schlom, J.5
  • 11
    • 0023016355 scopus 로고
    • Purification and partial characterization of cat pancreatic and urinary kallikreins-Comparison with other cat tissue kallikreins and related proteases
    • Fujimori H., Levison P.R., and Schachter M. Purification and partial characterization of cat pancreatic and urinary kallikreins-Comparison with other cat tissue kallikreins and related proteases. Adv. Exp. Med. Biol. 198 Pt. A (1986) 219-228
    • (1986) Adv. Exp. Med. Biol. , vol.198 , Issue.PART A , pp. 219-228
    • Fujimori, H.1    Levison, P.R.2    Schachter, M.3
  • 12
    • 0000875547 scopus 로고
    • Zur kenntnis des haushalts des kallikreins
    • Werle E. Zur kenntnis des haushalts des kallikreins. Biochem. Z. 269 (1934) 415-434
    • (1934) Biochem. Z. , vol.269 , pp. 415-434
    • Werle, E.1
  • 13
    • 0004969593 scopus 로고
    • The plasma kallikrein-kinin system and its interrelationship with other components of blood
    • Springer-Verlag, Berlin
    • Movat H.Z., and Erdos E.G. The plasma kallikrein-kinin system and its interrelationship with other components of blood. Bradykinin, Kallidin and Kallikrein (1979), Springer-Verlag, Berlin 1-89
    • (1979) Bradykinin, Kallidin and Kallikrein , pp. 1-89
    • Movat, H.Z.1    Erdos, E.G.2
  • 14
    • 0000848930 scopus 로고
    • Human prostate-specific antigen: structural and functional similarity with serine proteases
    • Watt K.W., Lee P.J., Timkulu M.'T., Chan W.P., and Loor R. Human prostate-specific antigen: structural and functional similarity with serine proteases. Proc. Natl. Acad. Sci. USA 83 (1986) 3166-3170
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 3166-3170
    • Watt, K.W.1    Lee, P.J.2    Timkulu, M.'T.3    Chan, W.P.4    Loor, R.5
  • 15
    • 0023218055 scopus 로고
    • Molecular cloning of human prostate specific antigen cDNA
    • Lundwall A., and Lilja H. Molecular cloning of human prostate specific antigen cDNA. FEBS Lett. 214 (1987) 317-322
    • (1987) FEBS Lett. , vol.214 , pp. 317-322
    • Lundwall, A.1    Lilja, H.2
  • 16
    • 0023553411 scopus 로고
    • Primary structure of a human glandular kallikrein gene
    • Schedlich L.J., Bennetts B.H., and Morris B.J. Primary structure of a human glandular kallikrein gene. DNA 6 (1987) 429-437
    • (1987) DNA , vol.6 , pp. 429-437
    • Schedlich, L.J.1    Bennetts, B.H.2    Morris, B.J.3
  • 17
    • 0035018273 scopus 로고    scopus 로고
    • The new human tissue kallikrein gene family: structure, function, and association to disease
    • Yousef G.M., and Diamandis E.P. The new human tissue kallikrein gene family: structure, function, and association to disease. Endocr. Rev. 22 (2001) 184-204
    • (2001) Endocr. Rev. , vol.22 , pp. 184-204
    • Yousef, G.M.1    Diamandis, E.P.2
  • 18
    • 0034675353 scopus 로고    scopus 로고
    • Genomic organization of the human kallikrein gene family on chromosome 19q13.3-q13.4
    • Yousef G.M., Chang A., Scorilas A., and Diamandis E.P. Genomic organization of the human kallikrein gene family on chromosome 19q13.3-q13.4. Biochem. Biophys. Res. Commun. 276 (2000) 125-133
    • (2000) Biochem. Biophys. Res. Commun. , vol.276 , pp. 125-133
    • Yousef, G.M.1    Chang, A.2    Scorilas, A.3    Diamandis, E.P.4
  • 20
    • 8144222388 scopus 로고    scopus 로고
    • The emerging roles of human tissue kallikreins in cancer
    • Borgoño C.A., and Diamandis E.P. The emerging roles of human tissue kallikreins in cancer. Nat. Rev. Cancer 4 (2004) 876-890
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 876-890
    • Borgoño, C.A.1    Diamandis, E.P.2
  • 21
    • 0036562226 scopus 로고    scopus 로고
    • Expanded human tissue kallikrein family-A novel panel of cancer biomarkers
    • Yousef G.M., and Diamandis E.P. Expanded human tissue kallikrein family-A novel panel of cancer biomarkers. Tumour Biol. 23 (2002) 185-192
    • (2002) Tumour Biol. , vol.23 , pp. 185-192
    • Yousef, G.M.1    Diamandis, E.P.2
  • 22
    • 19344371357 scopus 로고    scopus 로고
    • Human tissue kallikrein gene family: applications in cancer
    • Obiezu C.V., and Diamandis E.P. Human tissue kallikrein gene family: applications in cancer. Cancer Lett. 224 (2005) 1-22
    • (2005) Cancer Lett. , vol.224 , pp. 1-22
    • Obiezu, C.V.1    Diamandis, E.P.2
  • 23
    • 3543150203 scopus 로고    scopus 로고
    • Human tissue kallikreins: physiologic roles and applications in cancer
    • Borgoño C.A., Michael I.P., and Diamandis E.P. Human tissue kallikreins: physiologic roles and applications in cancer. Mol. Cancer Res. 2 (2004) 257-280
    • (2004) Mol. Cancer Res. , vol.2 , pp. 257-280
    • Borgoño, C.A.1    Michael, I.P.2    Diamandis, E.P.3
  • 24
    • 0035145155 scopus 로고    scopus 로고
    • Phylogenetic systematics turns over a new leaf
    • Lewis P.O. Phylogenetic systematics turns over a new leaf. Trends Ecol. Evol. 16 (2001) 30-37
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 30-37
    • Lewis, P.O.1
  • 25
    • 0035501327 scopus 로고    scopus 로고
    • Back to the future: Bayesian inference arrives in phylogenetics
    • Lewis P.O., and Swofford D.L. Back to the future: Bayesian inference arrives in phylogenetics. Trends Ecol. Evol. 16 (2001) 600-601
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 600-601
    • Lewis, P.O.1    Swofford, D.L.2
  • 26
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference
    • Rannala B., and Yang Z. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43 (1996) 304-311
    • (1996) J. Mol. Evol. , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 27
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 28
    • 0032976397 scopus 로고    scopus 로고
    • Markov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget B., and Simon D.L. Markov Chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16 (1999) 750-759
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.L.2
  • 29
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method
    • Yang Z., and Rannala B. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method. Mol. Biol. Evol. 14 (1997) 717-724
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 717-724
    • Yang, Z.1    Rannala, B.2
  • 30
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck J.P., Ronquist F., Nielsen R., and Bollback J.P. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294 (2001) 2310-2314
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 31
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: traditional and Bayesian approaches
    • Holder M., and Lewis P.O. Phylogeny estimation: traditional and Bayesian approaches. Nat. Rev. Genet. 4 (2003) 275-284
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 32
    • 21244495913 scopus 로고    scopus 로고
    • Understanding mammalian evolution using Bayesian phylogenetic inference
    • Kelly C.D. Understanding mammalian evolution using Bayesian phylogenetic inference. Mamm. Rev. 35 (2005) 188-198
    • (2005) Mamm. Rev. , vol.35 , pp. 188-198
    • Kelly, C.D.1
  • 33
    • 9944243134 scopus 로고    scopus 로고
    • The evolution of the glandular kallikrein locus: identification of orthologs and pseudogenes in the cotton-top tamarin
    • Olsson A.Y., Valtonen-Andre C., Lilja H., and Lundwall A. The evolution of the glandular kallikrein locus: identification of orthologs and pseudogenes in the cotton-top tamarin. Gene 343 (2004) 347-355
    • (2004) Gene , vol.343 , pp. 347-355
    • Olsson, A.Y.1    Valtonen-Andre, C.2    Lilja, H.3    Lundwall, A.4
  • 34
    • 14844313275 scopus 로고    scopus 로고
    • Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree
    • Gadagkar S.R., Rosenberg M.S., and Kumar S. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. J. Exp. Zool. B Mol. Dev. Evol. 304 (2005) 64-74
    • (2005) J. Exp. Zool. B Mol. Dev. Evol. , vol.304 , pp. 64-74
    • Gadagkar, S.R.1    Rosenberg, M.S.2    Kumar, S.3
  • 35
    • 33749442080 scopus 로고    scopus 로고
    • A. Lundwall, M. Blaber, J. Clements, Y. Courty, E. Diamandis, H. Lilja, et al., A comprehensive nomenclature for serine proteases with homology to the tissue kallikrein. Biol. Chem. (in press).
  • 36
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • Kent W.J. BLAT-The BLAST-like alignment tool. Genome Res. 12 (2002) 656-664
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 38
    • 0035189310 scopus 로고    scopus 로고
    • Spidey: a tool for mRNA-to-genomic alignments
    • Wheelan S.J., Church D.M., and Ostell J.M. Spidey: a tool for mRNA-to-genomic alignments. Genome Res. 11 (2001) 1952-1957
    • (2001) Genome Res. , vol.11 , pp. 1952-1957
    • Wheelan, S.J.1    Church, D.M.2    Ostell, J.M.3
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
    • 0026656815 scopus 로고
    • Exhaustive matching of the entire protein sequence database
    • Gonnet G.H., Cohen M.A., and Benner S.A. Exhaustive matching of the entire protein sequence database. Science 256 (1992) 1443-1445
    • (1992) Science , vol.256 , pp. 1443-1445
    • Gonnet, G.H.1    Cohen, M.A.2    Benner, S.A.3
  • 41
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 43


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.