Analysis of protein sequences and their secondary structures based on transition matrices

Journal of Molecular Structure: THEOCHEM

Volumn 803, Issue 1-3, 2007, Pages 115-122

  Dai, Qi ^a   Liu, Xiao qing ^a   Wang, Tian ming ^a  

^a DALIAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Biological sequences; Protein secondary structure; Similarity; Transition matrix

Indexed keywords

EID: 33846592954     PISSN: 01661280     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.theochem.2006.10.010     Document Type: Article

References (33)

1. Rost B. In: von Rague-Schleyer P., Allinger N.L., CClark T., Gasteiger J., Kollman P.A., and Schaefer H.F. (Eds). Encyclopedia of Computational Chemistry (1998), John Wiley, Sussex 2242-2255
2. Hamori E., and Ruskin J. J. Biol. Chem. 258 (1983) 1318-1327
3. Hamori E. BioTechniques 7 (1989) 710-720
4. Nandy A. Curr. Sci. 66 (1994) 309-314
5. Nandy A. Curr. Sci. 66 (1994) 821
6. Nandy A., and Nandy P. Chem. Phys. Lett. 368 (2003) 102-107
7. Randić M., Guo X.F., and Subhash C.B. J. Chem. Inf. Comput. Sci. 41 (2001) 619-626
8. Randić M., and Balaban A.T. J. Chem. Inf. Comput. Sci. 43 (2003) 532-539
9. Randić M., Vračko M., Lerš N., and Plavšić D. Chem. Phys. Lett. 371 (2003) 202-207
10. Randic M., and Zupan J. SAR QSAR Environ. Res. 15 (2004) 191-205
11. Wu Y.H., Liew A., Yan H., and Yang M.S. Chem. Phys. Lett. 367 (2003) 170-176
12. Guo X.F., Randić M., and Subhash C.B. Chem. Phys. Lett. 350 (2001) 106-112
13. Guo X.F., and Nandy A. Chem. Phys. Lett. 369 (2003) 361-366
14. He P., and Wang J. J. Chem. Inf. Comput. Sci. 42 (2002) 1080-1085
15. Li C., and Wang J. Comb. Chem. High Throughput Screen. 6 (2003) 795-799
16. Yao Y.H., and Wang T.M. Chem. Phys. Lett. 398 (2004) 318-323
17. Randić M. Chem. Phys. Lett. 386 (2004) 468-471
18. Chi R., and Ding K.Q. Chem. Phys. Lett. 407 (2005) 63-67
19. Dai Q., Liu X.Q., and Wang T.M. J. Mol. Graph. Model. 25 (2006) 340-344
20. Liao B., Tan M.S., and Ding K.Q. Chem. Phys. Lett. 402 (2005) 380-383
21. Liao B., and Wang T.M. J. Mol. Struct.: Theochem. 681 (2004) 209-212
22. Randić M. SAR QSAR Environ. Res. 15 (2004) 147-157
23. Randić M., Zupan J., and Balaban A.T. Chem. Phys. Lett. 397 (2004) 247-252
24. Bai F.L., and Wang T.M. J. Biomol. Struct. Dyn. 23 (2006) 537-545
25. Zhang C.T., and Zhang R. Biopolymers 53 (2000) 539-549
26. Liu L.W., and Wang T.M. J. Comput. Chem. 27 (2006) 1119-1124
27. Rabiner L.R. Proc. IEEE. 77 (1989) 257-286
28. Dai Q., Liu X.Q., and Wang T.M. J. Comput. Chem. 27 (2006) 1830-1842
29. Rost B. Methods Enzymol. 266 (1996) 525-539
30. Rost B., Schneider R., and Sander C. J. Mol. Biol. 235 (1994) 13-26
31. Thornton J.M., Flores T.P., Jones D.T., and Swindells M.B. Nature (London) 354 (1992) 105-106
32. Rost B., and Sander C. J. Mol. Biol. 232 (1993) 584-599
33. Kneller D.G., Cohen F.E., and Langridge R. J. Mol. Biol. 214 (1990) 171-182