메뉴 건너뛰기




Volumn 10, Issue 5, 2010, Pages 601-606

Network genealogy of 195-bp satellite DNA supports the superimposed hybridization hypothesis of Trypanosoma cruzi evolutionary pattern

Author keywords

American trypanosome; Chagas disease; Hybrid strains; T. cruzi III; T. cruzi V

Indexed keywords

PROTOZOAL DNA; SATELLITE DNA;

EID: 77953232447     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2010.04.007     Document Type: Article
Times cited : (21)

References (37)
  • 1
    • 0033256228 scopus 로고    scopus 로고
    • Recommendations from a satellite meeting
    • Anonymous
    • Anonymous Recommendations from a satellite meeting. Mem. Inst. Oswaldo Cruz 1999, 94(Suppl. 1):429-432.
    • (1999) Mem. Inst. Oswaldo Cruz , vol.94 , Issue.SUPPL. 1 , pp. 429-432
  • 2
    • 0032720058 scopus 로고    scopus 로고
    • The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogeniticy and host specificity
    • Briones M.R.S., Souto R.P., Stolf B.S., Zingales B. The evolution of two Trypanosoma cruzi subgroups inferred from rRNA genes can be correlated with the interchange of American mammalian faunas in the Cenozoic and has implications to pathogeniticy and host specificity. Mol. Biochem. Parasitol. 1999, 104:219-232.
    • (1999) Mol. Biochem. Parasitol. , vol.104 , pp. 219-232
    • Briones, M.R.S.1    Souto, R.P.2    Stolf, B.S.3    Zingales, B.4
  • 3
    • 0033954610 scopus 로고    scopus 로고
    • Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis
    • Brisse S., Barnabé C., Tibayrenc M. Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis. Int. J. Parasitol. 2000, 30:34-44.
    • (2000) Int. J. Parasitol. , vol.30 , pp. 34-44
    • Brisse, S.1    Barnabé, C.2    Tibayrenc, M.3
  • 4
    • 0034881536 scopus 로고    scopus 로고
    • Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages
    • Brisse S., Verhoef J., Tibayrenc M. Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages. Int. J. Parasitol. 2001, 31:1218-1226.
    • (2001) Int. J. Parasitol. , vol.31 , pp. 1218-1226
    • Brisse, S.1    Verhoef, J.2    Tibayrenc, M.3
  • 5
    • 4444373038 scopus 로고    scopus 로고
    • The determinants of Chagas disease: connecting parasite and host genetics
    • Campbell D.A., Westenberger S.J., Sturm N.R. The determinants of Chagas disease: connecting parasite and host genetics. Curr. Mol. Med. 2004, 4:549-562.
    • (2004) Curr. Mol. Med. , vol.4 , pp. 549-562
    • Campbell, D.A.1    Westenberger, S.J.2    Sturm, N.R.3
  • 7
    • 14744285421 scopus 로고    scopus 로고
    • Comparative analysis of genomic sequences suggests that Trypanosoma cruzi CL Brener contains two sets of non-intercalated repeats of satellite DNA that correspond to T. cruzi I and T. cruzi II types
    • Elias M.C.Q.B., Vargas N., Tomazi L., Pedroso A., Zingales B., Schenkman S., Briones M.R.S. Comparative analysis of genomic sequences suggests that Trypanosoma cruzi CL Brener contains two sets of non-intercalated repeats of satellite DNA that correspond to T. cruzi I and T. cruzi II types. Mol. Biochem. Parasitol. 2005, 140:221-227.
    • (2005) Mol. Biochem. Parasitol. , vol.140 , pp. 221-227
    • Elias, M.C.Q.B.1    Vargas, N.2    Tomazi, L.3    Pedroso, A.4    Zingales, B.5    Schenkman, S.6    Briones, M.R.S.7
  • 10
    • 0343533792 scopus 로고
    • Minichromosomal repetitive DNA in Trypanosoma cruzi: its use in a high-sensitivity parasite detection assay
    • Gonzalez A., Prediger E., Huecas M.E., Nogueira N., Lizardi P.M. Minichromosomal repetitive DNA in Trypanosoma cruzi: its use in a high-sensitivity parasite detection assay. Proc. Natl. Acad. Sci. U.S.A. 1984, 81:3356-3360.
    • (1984) Proc. Natl. Acad. Sci. U.S.A. , vol.81 , pp. 3356-3360
    • Gonzalez, A.1    Prediger, E.2    Huecas, M.E.3    Nogueira, N.4    Lizardi, P.M.5
  • 11
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 12
    • 0035207510 scopus 로고    scopus 로고
    • Maximum-likelihood divergence date estimates based on rRNA gene sequences suggest two scenarios of Trypanosoma cruzi intraspecific evolution
    • Kawashita S.Y., Sanson G.F.O., Fernandes O., Zingales B., Briones M.R.S. Maximum-likelihood divergence date estimates based on rRNA gene sequences suggest two scenarios of Trypanosoma cruzi intraspecific evolution. Mol. Biol. Evol. 2001, 18:2250-2259.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2250-2259
    • Kawashita, S.Y.1    Sanson, G.F.O.2    Fernandes, O.3    Zingales, B.4    Briones, M.R.S.5
  • 13
    • 73949161043 scopus 로고    scopus 로고
    • Genotyping of Trypanosoma cruzi: systematic selection of assays allowing rapid and accurate discrimination of all known lineages
    • Lewis M.D., Ma J., Yeo M., Carrasco H.J., Llewellyn M.S., Miles M.A. Genotyping of Trypanosoma cruzi: systematic selection of assays allowing rapid and accurate discrimination of all known lineages. Am. J. Trop. Med. Hyg. 2009, 10.4269/ajtmh.2009.09-0305.
    • (2009) Am. J. Trop. Med. Hyg.
    • Lewis, M.D.1    Ma, J.2    Yeo, M.3    Carrasco, H.J.4    Llewellyn, M.S.5    Miles, M.A.6
  • 14
    • 30544451181 scopus 로고    scopus 로고
    • The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-encoding retrotransposons
    • Lorenzi H.A., Robledo G., Levin M.J. The VIPER elements of trypanosomes constitute a novel group of tyrosine recombinase-encoding retrotransposons. Mol. Biochem. Parasitol. 2006, 145:184-194.
    • (2006) Mol. Biochem. Parasitol. , vol.145 , pp. 184-194
    • Lorenzi, H.A.1    Robledo, G.2    Levin, M.J.3
  • 15
    • 0026778954 scopus 로고
    • DNA fingerprinting of Trypanosoma cruzi: a new tool for characterization of strains and clones
    • Macedo A.M., Martins M.S., Chiari E., Pena S.D. DNA fingerprinting of Trypanosoma cruzi: a new tool for characterization of strains and clones. Mol. Biochem. Parasitol. 1992, 55:147-153.
    • (1992) Mol. Biochem. Parasitol. , vol.55 , pp. 147-153
    • Macedo, A.M.1    Martins, M.S.2    Chiari, E.3    Pena, S.D.4
  • 16
    • 0035912819 scopus 로고    scopus 로고
    • Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi
    • Machado C.A., Ayala F.J. Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:7396-7401.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 7396-7401
    • Machado, C.A.1    Ayala, F.J.2
  • 18
    • 70350439244 scopus 로고    scopus 로고
    • The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future
    • Miles M.A., Llewellyn M.S., Lewis M.D., Yeo M., Baleela R., Fitzpatrick S., Gaunt M.W., Mauricio I.L. The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future. Parasitology 2009, 136:1509-1528.
    • (2009) Parasitology , vol.136 , pp. 1509-1528
    • Miles, M.A.1    Llewellyn, M.S.2    Lewis, M.D.3    Yeo, M.4    Baleela, R.5    Fitzpatrick, S.6    Gaunt, M.W.7    Mauricio, I.L.8
  • 19
    • 0038512544 scopus 로고    scopus 로고
    • Evaluation of Trypanosoma cruzi hybrid stocks based on chromosomal size variation
    • Pedroso A., Cupolillo E., Zingales B. Evaluation of Trypanosoma cruzi hybrid stocks based on chromosomal size variation. Mol. Biochem. Parasitol. 2003, 129:79-90.
    • (2003) Mol. Biochem. Parasitol. , vol.129 , pp. 79-90
    • Pedroso, A.1    Cupolillo, E.2    Zingales, B.3
  • 20
    • 33947168263 scopus 로고    scopus 로고
    • Trypanosoma cruzi: exploring the nuclear genome of zymodeme 3 stocks by chromosome size polymorphism
    • Pedroso A., Cupolillo E., Zingales B. Trypanosoma cruzi: exploring the nuclear genome of zymodeme 3 stocks by chromosome size polymorphism. Exp. Parasitol. 2007, 116:71-76.
    • (2007) Exp. Parasitol. , vol.116 , pp. 71-76
    • Pedroso, A.1    Cupolillo, E.2    Zingales, B.3
  • 21
    • 0031773680 scopus 로고    scopus 로고
    • Model Test: testing the model of DNA substitution
    • Posada D., Crandall K.A. Model Test: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider T.D., Stephens R.M. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 1990, 18:6097-6100.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 27
  • 28
    • 77953025288 scopus 로고    scopus 로고
    • Alternative lifestyles: the population structure of Trypanosoma cruzi
    • Sturm N.R., Campbell D.A. Alternative lifestyles: the population structure of Trypanosoma cruzi. Acta Trop. 2009, 10.1016/j.actatropica.2009.08.018.
    • (2009) Acta Trop.
    • Sturm, N.R.1    Campbell, D.A.2
  • 30
    • 0004248459 scopus 로고    scopus 로고
    • PAUP Phylogenetic Analysis Using Parsimony (and Other Methods) Version 4b6
    • Sinauer Associates, Sunderland, MA
    • Swofford D.L. 1998, Sinauer Associates, Sunderland, MA.
    • (1998)
    • Swofford, D.L.1
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 0000595112 scopus 로고
    • Isoenzyme variability in Trypanosoma cruzi, the agent of Chagas' disease: genetical, taxonomical and epidemiological significance
    • Tibayrenc M., Ayala F.J. Isoenzyme variability in Trypanosoma cruzi, the agent of Chagas' disease: genetical, taxonomical and epidemiological significance. Evolution 1988, 42:277-292.
    • (1988) Evolution , vol.42 , pp. 277-292
    • Tibayrenc, M.1    Ayala, F.J.2
  • 33
    • 67649410262 scopus 로고    scopus 로고
    • Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic
    • Tomazi L., Kawashita S.Y., Pereira P.M., Zingales B., Briones M.R.S. Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic. Genet. Mol. Res. 2009, 8:458-476.
    • (2009) Genet. Mol. Res. , vol.8 , pp. 458-476
    • Tomazi, L.1    Kawashita, S.Y.2    Pereira, P.M.3    Zingales, B.4    Briones, M.R.S.5
  • 34
    • 27844475695 scopus 로고    scopus 로고
    • Functional elements residing within satellite DNAs
    • Ugarkovic D. Functional elements residing within satellite DNAs. EMBO Rep. 2005, 6:1035-1039.
    • (2005) EMBO Rep. , vol.6 , pp. 1035-1039
    • Ugarkovic, D.1
  • 35
    • 67649616018 scopus 로고    scopus 로고
    • Phylogenetic analysis of microsatellite markers further supports the two hybridization events hypothesis as the origin of the Trypanosoma cruzi lineages
    • Venegas J., Coñoepan W., Pichuantes S., Miranda S., Jercic M.I., Gajardo M., Sánchez G. Phylogenetic analysis of microsatellite markers further supports the two hybridization events hypothesis as the origin of the Trypanosoma cruzi lineages. Parasitol. Res. 2009, 105:191-199.
    • (2009) Parasitol. Res. , vol.105 , pp. 191-199
    • Venegas, J.1    Coñoepan, W.2    Pichuantes, S.3    Miranda, S.4    Jercic, M.I.5    Gajardo, M.6    Sánchez, G.7
  • 36
    • 31544467265 scopus 로고    scopus 로고
    • Two hybridization events define the population structure of Trypanosoma cruzi
    • Westenberger S.J., Barnabé C., Campbell D.A., Sturm N.R. Two hybridization events define the population structure of Trypanosoma cruzi. Genetics 2005, 171:527-543.
    • (2005) Genetics , vol.171 , pp. 527-543
    • Westenberger, S.J.1    Barnabé, C.2    Campbell, D.A.3    Sturm, N.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.