메뉴 건너뛰기




Volumn 73, Issue 4, 2010, Pages 519-532

ORTom: A multi-species approach based on conserved co-expression to identify putative functional relationships among genes in tomato

Author keywords

Conserved co expression; Expressed sequence tag (EST); Functional genomics; Solanaceae; Systems biology

Indexed keywords

ANTIBODY SPECIFICITY; ARABIDOPSIS; ARTICLE; COMPUTER PROGRAM; DATA MINING; FRUIT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; GROWTH, DEVELOPMENT AND AGING; HOST PATHOGEN INTERACTION; INTERNET; METHODOLOGY; PLANT GENE; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE; TOMATO;

EID: 77953230084     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-010-9638-z     Document Type: Article
Times cited : (3)

References (69)
  • 1
    • 0036065973 scopus 로고    scopus 로고
    • Silencing of a gene encoding a protein component of the oxygen-evolving complex of photosystem II enhances virus replication in plants
    • doi:10.1006/viro.2002.1332
    • Abbink TE, Peart JR, Mos TN, Baulcombe DC, Bol JF, Linthorst HJ (2002) Silencing of a gene encoding a protein component of the oxygen-evolving complex of photosystem II enhances virus replication in plants. Virology 295: 307-319. doi: 10. 1006/viro. 2002. 1332.
    • (2002) Virology , vol.295 , pp. 307-319
    • Abbink, T.E.1    Peart, J.R.2    Mos, T.N.3    Baulcombe, D.C.4    Bol, J.F.5    Linthorst, H.J.6
  • 2
    • 41849139980 scopus 로고    scopus 로고
    • Prediction of human disease genes by human-mouse conserved coexpression analysis
    • doi:10.1371/journal.pcbi.1000043
    • Ala U, Piro RM, Grassi E, Damasco C, Silengo L, Oti M, Provero P, Di Cunto F (2008) Prediction of human disease genes by human-mouse conserved coexpression analysis. PLoS Comput Biol 4: e1000043. doi: 10. 1371/journal. pcbi. 1000043.
    • (2008) PLoS Comput Biol , vol.4
    • Ala, U.1    Piro, R.M.2    Grassi, E.3    Damasco, C.4    Silengo, L.5    Oti, M.6    Provero, P.7    Di Cunto, F.8
  • 3
    • 33344476119 scopus 로고    scopus 로고
    • Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development
    • doi:10.1105/tpc.105.036053
    • Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ (2005) Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 17(11): 2954-2965. doi: 10. 1105/tpc. 105. 036053.
    • (2005) Plant Cell , vol.17 , Issue.11 , pp. 2954-2965
    • Alba, R.1    Payton, P.2    Fei, Z.3    McQuinn, R.4    Debbie, P.5    Martin, G.B.6    Tanksley, S.D.7    Giovannoni, J.J.8
  • 4
    • 0036793537 scopus 로고    scopus 로고
    • Ethylene biosynthesis and action in tomato: A model for climacteric fruit ripening
    • doi:10.1093/jxb/erf072
    • Alexander L, Grierson D (2002) Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J Exp Bot 53(377): 2039-2055. doi: 10. 1093/jxb/erf072.
    • (2002) J Exp Bot , vol.53 , Issue.377 , pp. 2039-2055
    • Alexander, L.1    Grierson, D.2
  • 5
    • 33748646985 scopus 로고    scopus 로고
    • Tobacco mosaic virus movement protein functions as a structural microtubule-associated protein
    • doi:10.1128/JVI.00540-06
    • Ashby J, Boutant E, Seemanpillai M, Groner A, Sambade A, Ritzenthaler C, Heinlein M (2006) Tobacco mosaic virus movement protein functions as a structural microtubule-associated protein. J Virol 80: 8329-8344. doi: 10. 1128/JVI. 00540-06.
    • (2006) J Virol , vol.80 , pp. 8329-8344
    • Ashby, J.1    Boutant, E.2    Seemanpillai, M.3    Groner, A.4    Sambade, A.5    Ritzenthaler, C.6    Heinlein, M.7
  • 6
    • 34548652782 scopus 로고    scopus 로고
    • Cloning and expression of GDP-D-mannose pyrophosphorylase gene and ascorbic acid content of acerola (Malpighia glabra L.) fruit at ripening stages
    • doi:10.1016/j.plaphy.2007.07.003
    • Badejo AA, Jeong ST, Goto-Yamamoto N, Esaka M (2007) Cloning and expression of GDP-D-mannose pyrophosphorylase gene and ascorbic acid content of acerola (Malpighia glabra L.) fruit at ripening stages. Plant Physiol Biochem 45(9): 665-672. doi: 10. 1016/j. plaphy. 2007. 07. 003.
    • (2007) Plant Physiol Biochem , vol.45 , Issue.9 , pp. 665-672
    • Badejo, A.A.1    Jeong, S.T.2    Goto-Yamamoto, N.3    Esaka, M.4
  • 8
    • 19344374050 scopus 로고    scopus 로고
    • Similarities and differences in genome-wide expression data of six organisms
    • doi:10.1371/journal.pbio.0020009
    • Bergmann S, Ihmels J, Barkai N (2004) Similarities and differences in genome-wide expression data of six organisms. PLoS Biol 2: E9. doi: 10. 1371/journal. pbio. 0020009.
    • (2004) PLoS Biol , vol.2
    • Bergmann, S.1    Ihmels, J.2    Barkai, N.3
  • 9
    • 20744456475 scopus 로고    scopus 로고
    • Correlation between gene expression profiles and protein-protein interactions within and across genomes
    • doi:10.1093/bioinformatics/bti398
    • Bhardwaj N, Lu H (2005) Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics 21: 2730-2738. doi: 10. 1093/bioinformatics/bti398.
    • (2005) Bioinformatics , vol.21 , pp. 2730-2738
    • Bhardwaj, N.1    Lu, H.2
  • 11
    • 33748938409 scopus 로고    scopus 로고
    • The role of ethylene in host-pathogen interactions
    • doi:10.1146/annurev.phyto.44.070505.143440
    • Broekaert WF, Delauré SL, De Bolle MFC, Cammue BPA (2006) The role of ethylene in host-pathogen interactions. Annu Rev Phytopathol 44: 393-416. doi: 10. 1146/annurev. phyto. 44. 070505. 143440.
    • (2006) Annu Rev Phytopathol , vol.44 , pp. 393-416
    • Broekaert, W.F.1    Delauré, S.L.2    de Bolle, M.F.C.3    Cammue, B.P.A.4
  • 12
    • 33845665396 scopus 로고    scopus 로고
    • Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior
    • doi:10.1104/pp.106.088534
    • Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor MI, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove LJ, Fernie AR (2006) Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol 142(4): 1380-1396. doi: 10. 1104/pp. 106. 088534.
    • (2006) Plant Physiol , vol.142 , Issue.4 , pp. 1380-1396
    • Carrari, F.1    Baxter, C.2    Usadel, B.3    Urbanczyk-Wochniak, E.4    Zanor, M.I.5    Nunes-Nesi, A.6    Nikiforova, V.7    Centero, D.8    Ratzka, A.9    Pauly, M.10    Sweetlove, L.J.11    Fernie, A.R.12
  • 13
    • 0024740033 scopus 로고
    • Lnteraction of a developmentally regulated DNA-binding factor with sites flanking two different fruit-ripening genes from tomato
    • doi:10.1105/tpc.1.10.1025
    • Cordes S, Deikman J, Margossian LJ, Fischer RL (1989) lnteraction of a developmentally regulated DNA-binding factor with sites flanking two different fruit-ripening genes from tomato. Plant Cell 1(10): 1025-1034. doi: 10. 1105/tpc. 1. 10. 1025.
    • (1989) Plant Cell , vol.1 , Issue.10 , pp. 1025-1034
    • Cordes, S.1    Deikman, J.2    Margossian, L.J.3    Fischer, R.L.4
  • 14
    • 53549123850 scopus 로고    scopus 로고
    • Employing conservation of co-expression to improve functional inference
    • doi:10.1186/1752-0509-2-81
    • Daub CO, Sonnhammer EL (2008) Employing conservation of co-expression to improve functional inference. BMC Syst Biol 2: 81. doi: 10. 1186/1752-0509-2-81.
    • (2008) BMC Syst Biol , vol.2 , pp. 81
    • Daub, C.O.1    Sonnhammer, E.L.2
  • 16
    • 24744468755 scopus 로고    scopus 로고
    • From single genes to co-expression networks: Extracting knowledge from barley functional genomics
    • doi:10.1007/s11103-005-8159-7
    • Faccioli P, Provero P, Herrmann C, Stanca AM, Morcia C, Terzi V (2005) From single genes to co-expression networks: extracting knowledge from barley functional genomics. Plant Mol Biol 58: 739-750. doi: 10. 1007/s11103-005-8159-7.
    • (2005) Plant Mol Biol , vol.58 , pp. 739-750
    • Faccioli, P.1    Provero, P.2    Herrmann, C.3    Stanca, A.M.4    Morcia, C.5    Terzi, V.6
  • 17
    • 34250678462 scopus 로고    scopus 로고
    • Major proteome variations associated with cherry tomato pericarp development and ripening
    • doi:10.1104/pp.106.092817
    • Faurobert M, Mihr C, Bertin N, Pawlowski T, Negroni L, Sommerer N, Causse M (2007) Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol 143(3): 1327-1346. doi: 10. 1104/pp. 106. 092817.
    • (2007) Plant Physiol , vol.143 , Issue.3 , pp. 1327-1346
    • Faurobert, M.1    Mihr, C.2    Bertin, N.3    Pawlowski, T.4    Negroni, L.5    Sommerer, N.6    Causse, M.7
  • 18
    • 0033167387 scopus 로고    scopus 로고
    • 14-3-3 proteins: Eukaryotic regulatory proteins with many functions
    • doi:10.1023/A:1006211014713
    • Finnie C, Borch J, Collinge DB (1999) 14-3-3 proteins: eukaryotic regulatory proteins with many functions. Plant Mol Biol 40(4): 545-554. doi: 10. 1023/A: 1006211014713.
    • (1999) Plant Mol Biol , vol.40 , Issue.4 , pp. 545-554
    • Finnie, C.1    Borch, J.2    Collinge, D.B.3
  • 19
    • 2342631335 scopus 로고    scopus 로고
    • S-adenosylmethionine: Nothing goes to waste
    • doi:10.1016/j.tibs.2004.03.007
    • Fontecave M, Atta M, Mulliez E (2004) S-adenosylmethionine: nothing goes to waste. Trends Biochem Sci 29: 243-249. doi: 10. 1016/j. tibs. 2004. 03. 007.
    • (2004) Trends Biochem Sci , vol.29 , pp. 243-249
    • Fontecave, M.1    Atta, M.2    Mulliez, E.3
  • 20
    • 1842486262 scopus 로고    scopus 로고
    • Inter-species differences of co-expression of neighboring genes in eukaryotic genomes
    • doi:10.1186/1471-2164-5-4
    • Fukuoka Y, Inaoka H, Kohane IS (2004) Inter-species differences of co-expression of neighboring genes in eukaryotic genomes. BMC Genomics 5: 4. doi: 10. 1186/1471-2164-5-4.
    • (2004) BMC Genomics , vol.5 , pp. 4
    • Fukuoka, Y.1    Inaoka, H.2    Kohane, I.S.3
  • 21
    • 23644461190 scopus 로고    scopus 로고
    • Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: Functional and evolutionary implications
    • doi:10.1007/sl1103-005-5346-5
    • Gachon CMM, Langlois-Meurinne M, Henry Y, Saindrenan P (2005) Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol Biol 58: 229-245. doi: 10. 1007/sl1103-005-5346-5.
    • (2005) Plant Mol Biol , vol.58 , pp. 229-245
    • Gachon, C.M.M.1    Langlois-Meurinne, M.2    Henry, Y.3    Saindrenan, P.4
  • 22
    • 28944431509 scopus 로고    scopus 로고
    • The choice of optimal distance measure in genome-wide datasets
    • doi:10.1093/bioinformatica/bti1201
    • Glazko G, Gordon A, Mushegian A (2005) The choice of optimal distance measure in genome-wide datasets. Bioinformatics 21(Suppl 3): iii3-iii11. doi: 10. 1093/bioinformatica/bti1201.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL 3
    • Glazko, G.1    Gordon, A.2    Mushegian, A.3
  • 23
    • 0029549778 scopus 로고
    • Interaction of tobamovirus movement proteins with the plant cytoskeleton
    • doi:10.1126/science.270.5244.1983
    • Heinlein M, Epel BL, Padgett HS, Beachy RN (1995) Interaction of tobamovirus movement proteins with the plant cytoskeleton. Science 270: 1983-1985. doi: 10. 1126/science. 270. 5244. 1983.
    • (1995) Science , vol.270 , pp. 1983-1985
    • Heinlein, M.1    Epel, B.L.2    Padgett, H.S.3    Beachy, R.N.4
  • 24
    • 0242268504 scopus 로고    scopus 로고
    • RNA helicase domain of tobamovirus replicase executes cell-to-cell movement possibly through collaboration with its non conserved region
    • doi:10.1128/JVI.77.22.12357-12362.2003
    • Hirashima K, Watanabe Y (2003) RNA helicase domain of tobamovirus replicase executes cell-to-cell movement possibly through collaboration with its non conserved region. J Virol 77: 12357-12362. doi: 10. 1128/JVI. 77. 22. 12357-12362. 2003.
    • (2003) J Virol , vol.77 , pp. 12357-12362
    • Hirashima, K.1    Watanabe, Y.2
  • 25
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • doi:10.1101/gr.205602
    • Jansen R, Greenbaum D, Gerstein M (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res 12: 37-46. doi: 10. 1101/gr. 205602.
    • (2002) Genome Res , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 26
    • 0001840714 scopus 로고
    • Ethylene-independent and ethylene-dependent biochemical changes in ripening tomatoes
    • Jeffery D, Smith C, Goodenough P, Prosser I, Grierson D (1984) Ethylene-independent and ethylene-dependent biochemical changes in ripening tomatoes. Plant Physiol 74(1): 32-38.
    • (1984) Plant Physiol , vol.74 , Issue.1 , pp. 32-38
    • Jeffery, D.1    Smith, C.2    Goodenough, P.3    Prosser, I.4    Grierson, D.5
  • 27
    • 2142640556 scopus 로고
    • Enzyme activities in mitochondria isolated from ripening tomato fruit
    • doi:10.1007/BF00392366
    • Jeffery D, Goodenough PW, Weitzman PDJ (1986) Enzyme activities in mitochondria isolated from ripening tomato fruit. Planta 168(3): 390-394. doi: 10. 1007/BF00392366.
    • (1986) Planta , vol.168 , Issue.3 , pp. 390-394
    • Jeffery, D.1    Goodenough, P.W.2    Weitzman, P.D.J.3
  • 28
    • 33646844440 scopus 로고    scopus 로고
    • The Arabidopsis co-expression tool (ACT): A WWW-based tool and database for microarray-based gene expression analysis
    • doi:10.1111/j.1365-313X.2006.02681.x
    • Jen CH, Manfield IW, Michalopoulos I, Pinney JW, Willats WG, Gilmartin PM, Westhead DR (2006) The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. Plant J 46(2): 336-348. doi: 10. 1111/j. 1365-313X. 2006. 02681. x.
    • (2006) Plant J , vol.46 , Issue.2 , pp. 336-348
    • Jen, C.H.1    Manfield, I.W.2    Michalopoulos, I.3    Pinney, J.W.4    Willats, W.G.5    Gilmartin, P.M.6    Westhead, D.R.7
  • 29
    • 13444251367 scopus 로고    scopus 로고
    • Evolutionary significance of gene expression divergence
    • doi:10.1016/j.gene.2004.11.034
    • Jordan IK, Mariño-Ramírez L, Koonin EV (2005) Evolutionary significance of gene expression divergence. Gene 345(1): 119-126. doi: 10. 1016/j. gene. 2004. 11. 034.
    • (2005) Gene , vol.345 , Issue.1 , pp. 119-126
    • Jordan, I.K.1    Mariño-Ramírez, L.2    Koonin, E.V.3
  • 32
    • 0028487487 scopus 로고
    • Two tomato fruit homologs of 14-3-3 mammalian brain proteins
    • Laughner B, Lawrence SD, Ferl RJ (1994) Two tomato fruit homologs of 14-3-3 mammalian brain proteins. Plant Physiol 105(4): 1457-1458.
    • (1994) Plant Physiol , vol.105 , Issue.4 , pp. 1457-1458
    • Laughner, B.1    Lawrence, S.D.2    Ferl, R.J.3
  • 33
    • 70349215646 scopus 로고    scopus 로고
    • RiceArrayNet: A database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice
    • doi:10.1104/pp.109.139030
    • Lee TH, Kim YK, Pham TT, Song SI, Kim JK, Kang KY, An G, Jung KH, Galbraith DW, Kim M, Yoon UH, Nahm BH (2009) RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice. Plant Physiol 151(1): 16-33. doi: 10. 1104/pp. 109. 139030.
    • (2009) Plant Physiol , vol.151 , Issue.1 , pp. 16-33
    • Lee, T.H.1    Kim, Y.K.2    Pham, T.T.3    Song, S.I.4    Kim, J.K.5    Kang, K.Y.6    An, G.7    Jung, K.H.8    Galbraith, D.W.9    Kim, M.10    Yoon, U.H.11    Nahm, B.H.12
  • 35
    • 84986469573 scopus 로고
    • Developmental regulation of the expression of alcohol dehydrogenase in ripening tomato fruits
    • doi:10.1111/j.1745-4514.1990.tb00804.x
    • Longhurst TJ, Tung HF, Brady CJ (1990) Developmental regulation of the expression of alcohol dehydrogenase in ripening tomato fruits. J Food Biochem 14(6): 421-433. doi: 10. 1111/j. 1745-4514. 1990. tb00804. x.
    • (1990) J Food Biochem , vol.14 , Issue.6 , pp. 421-433
    • Longhurst, T.J.1    Tung, H.F.2    Brady, C.J.3
  • 36
    • 0030113339 scopus 로고    scopus 로고
    • Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells
    • Loraine AE, Yalovsky S, Fabry S, Gruissem W (1996) Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells. Plant Physiol 110(4): 1337-1347.
    • (1996) Plant Physiol , vol.110 , Issue.4 , pp. 1337-1347
    • Loraine, A.E.1    Yalovsky, S.2    Fabry, S.3    Gruissem, W.4
  • 37
    • 0034872903 scopus 로고    scopus 로고
    • Developmental abnormalities and reduced fruit softening in tomato plants expressing an antisense Rab11 GTPase gene
    • doi:10.1105/TPC.010069
    • Lu C, Zainal Z, Tucker GA, Lycett GW (2001) Developmental abnormalities and reduced fruit softening in tomato plants expressing an antisense Rab11 GTPase gene. Plant Cell 13(8): 1819-1833. doi: 10. 1105/TPC. 010069.
    • (2001) Plant Cell , vol.13 , Issue.8 , pp. 1819-1833
    • Lu, C.1    Zainal, Z.2    Tucker, G.A.3    Lycett, G.W.4
  • 38
    • 0242489811 scopus 로고    scopus 로고
    • Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA
    • Más P, Beachy RN (1999) Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA. J Cell Biol 147: 945-958.
    • (1999) J Cell Biol , vol.147 , pp. 945-958
    • Más, P.1    Beachy, R.N.2
  • 39
    • 0013599979 scopus 로고    scopus 로고
    • Molecular cloning and nucleotide sequence of a Rab7 small GTP-binding protein from apricot fruit. Gene expression during fruit ripening (PGR97-117)
    • Mbeguie-A-Mbeguie D, Gomez RM, Fils-Lycaon B (1997) Molecular cloning and nucleotide sequence of a Rab7 small GTP-binding protein from apricot fruit. Gene expression during fruit ripening (PGR97-117). Plant Physiol 114: 1569.
    • (1997) Plant Physiol , vol.114 , pp. 1569
    • Mbeguie-A-Mbeguie, D.1    Gomez, R.M.2    Fils-Lycaon, B.3
  • 40
    • 49249095893 scopus 로고    scopus 로고
    • Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data
    • doi:10.1371/journal.pone.0002439
    • Miozzi L, Piro RM, Rosa F, Ala U, Silengo L, Di Cunto F, Provero P (2008) Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data. PLoS ONE 3: e2439. doi: 10. 1371/journal. pone. 0002439.
    • (2008) PLoS ONE , vol.3
    • Miozzi, L.1    Piro, R.M.2    Rosa, F.3    Ala, U.4    Silengo, L.5    Di Cunto, F.6    Provero, P.7
  • 41
    • 48449091196 scopus 로고    scopus 로고
    • GeneCAT-novel webtools that combine BLAST and co-expression analyses
    • Web Server issue,doi:10.1093/nar/gkn292
    • Mutwil M, Obro J, Willats WG, Persson S (2008) GeneCAT-novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res 36(Web Server issue): W320-W326. doi: 10. 1093/nar/gkn292.
    • (2008) Nucleic Acids Res , vol.36
    • Mutwil, M.1    Obro, J.2    Willats, W.G.3    Persson, S.4
  • 43
    • 43749122355 scopus 로고    scopus 로고
    • Conserved co-expression for candidate disease gene prioritization
    • doi:10.1186/1471-2105-9-208
    • Oti M, van Reeuwijk J, Huynen M, Brunner H (2008) Conserved co-expression for candidate disease gene prioritization. BMC Bioinformatics 9: 208. doi: 10. 1186/1471-2105-9-208.
    • (2008) BMC Bioinformatics , vol.9 , pp. 208
    • Oti, M.1    van Reeuwijk, J.2    Huynen, M.3    Brunner, H.4
  • 44
    • 13244255460 scopus 로고    scopus 로고
    • CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species
    • doi:10.1186/1471-2105-5-179
    • Pellegrino M, Provero P, Silengo L, Di Cunto F (2004) CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species. BMC Bioinformatics 5: 179-189. doi: 10. 1186/1471-2105-5-179.
    • (2004) BMC Bioinformatics , vol.5 , pp. 179-189
    • Pellegrino, M.1    Provero, P.2    Silengo, L.3    Di Cunto, F.4
  • 45
    • 0027674297 scopus 로고
    • CDNA cloning and characterisation of novel ripening-related mRNAs with altered patterns of accumulation in the ripening inhibitor (rin) tomato ripening mutant
    • doi:10.1007/BF00021431
    • Picton S, Gray J, Barton S, AbuBakar U, Lowe A, Grierson D (1993) cDNA cloning and characterisation of novel ripening-related mRNAs with altered patterns of accumulation in the ripening inhibitor (rin) tomato ripening mutant. Plant Mol Biol 23(1): 193-207. doi: 10. 1007/BF00021431.
    • (1993) Plant Mol Biol , vol.23 , Issue.1 , pp. 193-207
    • Picton, S.1    Gray, J.2    Barton, S.3    Abubakar, U.4    Lowe, A.5    Grierson, D.6
  • 46
    • 0031939893 scopus 로고    scopus 로고
    • The emerging problem of tospovirus infection and nonconventional methods of control
    • doi:10.1016/S0966-842X(97)01173-6
    • Prins M, Goldbach R (1998) The emerging problem of tospovirus infection and nonconventional methods of control. Trends Microbiol 6: 31-35. doi: 10. 1016/S0966-842X(97)01173-6.
    • (1998) Trends Microbiol , vol.6 , pp. 31-35
    • Prins, M.1    Goldbach, R.2
  • 47
    • 42149116826 scopus 로고    scopus 로고
    • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    • doi:10.1038/msb.2008.19
    • Ramani AK, Li Z, Hart TG, Carlson MW, Boutz DR, Marcotte EM (2008) A map of human protein interactions derived from co-expression of human mRNAs and their orthologs. Mol Syst Biol 4: 180. doi: 10. 1038/msb. 2008. 19.
    • (2008) Mol Syst Biol , vol.4 , pp. 180
    • Ramani, A.K.1    Li, Z.2    Hart, T.G.3    Carlson, M.W.4    Boutz, D.R.5    Marcotte, E.M.6
  • 48
    • 0002129975 scopus 로고    scopus 로고
    • Quantification on the LightCycler
    • S. C. Meuer, C. Wittwer, and K. Nakagawara (Eds.), Heidelberg: Springer
    • Rasmussen R (2001) Quantification on the LightCycler. In: Meuer SC, Wittwer C, Nakagawara K (eds) Rapid cycle real-time PCR methods and applications. Springer, Heidelberg, pp 21-34.
    • (2001) Rapid Cycle Real-Time PCR Methods and Applications , pp. 21-34
    • Rasmussen, R.1
  • 49
    • 2542430082 scopus 로고    scopus 로고
    • Methionine metabolism in plants: Chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol
    • doi:10.1074/jbc.M313250200
    • Ravanel S, Block MA, Rippert P, Jabrin S, Curien G, Rébeillé F, Douce R (2004) Methionine metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol. J Biol Chem 279(21): 22548-22557. doi: 10. 1074/jbc. M313250200.
    • (2004) J Biol Chem , vol.279 , Issue.21 , pp. 22548-22557
    • Ravanel, S.1    Block, M.A.2    Rippert, P.3    Jabrin, S.4    Curien, G.5    Rébeillé, F.6    Douce, R.7
  • 50
    • 25444513755 scopus 로고    scopus 로고
    • Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts
    • doi:10.1186/1471-2164-6-124
    • Rensink WA, Lee Y, Liu J, Iobst S, Ouyang S, Buell CR (2005) Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts. BMC Genomics 6: 124-138. doi: 10. 1186/1471-2164-6-124.
    • (2005) BMC Genomics , vol.6 , pp. 124-138
    • Rensink, W.A.1    Lee, Y.2    Liu, J.3    Iobst, S.4    Ouyang, S.5    Buell, C.R.6
  • 51
    • 0035999984 scopus 로고    scopus 로고
    • Binary analysis and optimization-based normalization of gene expression data
    • doi:10.1093/bioinformatics/18.4.555
    • Shmulevich I, Zhang W (2002) Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18(4): 555-565. doi: 10. 1093/bioinformatics/18. 4. 555.
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 555-565
    • Shmulevich, I.1    Zhang, W.2
  • 52
    • 0034986111 scopus 로고    scopus 로고
    • The Rab GTPase family
    • REVIEWS3007. doi: 10. 1186/gb-2001-2-5-reviews3007
    • Stenmark H, Olkkonen VM (2001) The Rab GTPase family. Genome Biol 2(5): REVIEWS3007. doi: 10. 1186/gb-2001-2-5-reviews3007.
    • (2001) Genome Biol , vol.2 , Issue.5
    • Stenmark, H.1    Olkkonen, V.M.2
  • 53
    • 0036772367 scopus 로고    scopus 로고
    • Conservation of gene co-regulation in prokaryotes and eukaryotes
    • doi:10.1016/S0167-7799(02)02032-2
    • Teichmann SA, Babu MM (2002) Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends Biotechnol 20: 407-410. doi: 10. 1016/S0167-7799(02)02032-2.
    • (2002) Trends Biotechnol , vol.20 , pp. 407-410
    • Teichmann, S.A.1    Babu, M.M.2
  • 54
    • 0030299223 scopus 로고    scopus 로고
    • Interactions between the soil-borne root pathogen Phytophthora nicotianae var parasitica and arbuscular mycorrhizal fungus Glomus mosseae in tomato plants
    • doi:10.1007/BF02257525
    • Trotta A, Varese GC, Gnavi E, Fusconi A, Sampò S, Berta G (1996) Interactions between the soil-borne root pathogen Phytophthora nicotianae var parasitica and arbuscular mycorrhizal fungus Glomus mosseae in tomato plants. Plant Soil 185: 199-209. doi: 10. 1007/BF02257525.
    • (1996) Plant Soil , vol.185 , pp. 199-209
    • Trotta, A.1    Varese, G.C.2    Gnavi, E.3    Fusconi, A.4    Sampò, S.5    Berta, G.6
  • 56
    • 0037407924 scopus 로고    scopus 로고
    • Predicting gene function by conserved co-expression
    • doi:10.1016/S0168-9525(03)00056-8
    • van Noort V, Snel B, Huynen MA (2003) Predicting gene function by conserved co-expression. Trends Genet 19: 238-242. doi: 10. 1016/S0168-9525(03)00056-8.
    • (2003) Trends Genet , vol.19 , pp. 238-242
    • van Noort, V.1    Snel, B.2    Huynen, M.A.3
  • 57
    • 0033670949 scopus 로고    scopus 로고
    • Polyamines in plant-microbe interactions
    • doi:10.1006/pmpp.2000.0286
    • Walters DR (2000) Polyamines in plant-microbe interactions. Physiol Mol Plant Pathol 57: 137-146. doi: 10. 1006/pmpp. 2000. 0286.
    • (2000) Physiol Mol Plant Pathol , vol.57 , pp. 137-146
    • Walters, D.R.1
  • 58
    • 0038275915 scopus 로고    scopus 로고
    • Resistance to plant pathogens: Possible roles for free polyamines and polyamine catabolism
    • doi:10.1046/j.1469-8137.2003.00802.x
    • Walters D (2003) Resistance to plant pathogens: possible roles for free polyamines and polyamine catabolism. New Phytol 159: 109-115. doi: 10. 1046/j. 1469-8137. 2003. 00802. x.
    • (2003) New Phytol , vol.159 , pp. 109-115
    • Walters, D.1
  • 59
    • 0036274678 scopus 로고    scopus 로고
    • Ethylene biosynthesis and signaling networks
    • Wang KL, Li H, Ecker JR (2002) Ethylene biosynthesis and signaling networks. Plant Cell 14(Suppl): S131-S151.
    • (2002) Plant Cell , vol.14 , Issue.SUPPL
    • Wang, K.L.1    Li, H.2    Ecker, J.R.3
  • 60
    • 12544249634 scopus 로고    scopus 로고
    • Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance
    • doi:10.1007/s11103-004-0113-6
    • Wang H, Huang Z, Chen Q, Zhang Z, Zhang H, Wu Y, Huang D, Huang R (2004a) Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance. Plant Mol Biol 55(2): 183-192. doi: 10. 1007/s11103-004-0113-6.
    • (2004) Plant Mol Biol , vol.55 , Issue.2 , pp. 183-192
    • Wang, H.1    Huang, Z.2    Chen, Q.3    Zhang, Z.4    Zhang, H.5    Wu, Y.6    Huang, D.7    Huang, R.8
  • 61
    • 2442445139 scopus 로고    scopus 로고
    • Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response
    • doi:10.1016/j.tplants.2004.03.006
    • Wang W, Vinocur B, Shoseyov O, Altman A (2004b) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9(5): 244-252. doi: 10. 1016/j. tplants. 2004. 03. 006.
    • (2004) Trends Plant Sci , vol.9 , Issue.5 , pp. 244-252
    • Wang, W.1    Vinocur, B.2    Shoseyov, O.3    Altman, A.4
  • 62
    • 27244434212 scopus 로고    scopus 로고
    • Antisense suppression of deoxyhypusine synthase in tomato delays fruit softening and alters growth and development
    • doi:10.1104/pp.105.060194
    • Wang TW, Zhang CG, Wu W, Nowack LM, Madey E, Thompson JE (2005) Antisense suppression of deoxyhypusine synthase in tomato delays fruit softening and alters growth and development. Plant Physiol 138(3): 1372-1382. doi: 10. 1104/pp. 105. 060194.
    • (2005) Plant Physiol , vol.138 , Issue.3 , pp. 1372-1382
    • Wang, T.W.1    Zhang, C.G.2    Wu, W.3    Nowack, L.M.4    Madey, E.5    Thompson, J.E.6
  • 63
    • 33646170036 scopus 로고    scopus 로고
    • Euchromatin and pericentromeric heterochromatin: Comparative composition in the tomato genome
    • doi:10.1534/genetics.106.055772
    • Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD (2006) Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome. Genetics 172: 2529-2540. doi: 10. 1534/genetics. 106. 055772.
    • (2006) Genetics , vol.172 , pp. 2529-2540
    • Wang, Y.1    Tang, X.2    Cheng, Z.3    Mueller, L.4    Giovannoni, J.5    Tanksley, S.D.6
  • 64
    • 25444476441 scopus 로고    scopus 로고
    • Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks
    • doi:10.1186/1471-2105-6-227
    • Wolfe CJ, Kohane IS, Butte AJ (2005) Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks. BMC Bioinformatics 6: 227-237. doi: 10. 1186/1471-2105-6-227.
    • (2005) BMC Bioinformatics , vol.6 , pp. 227-237
    • Wolfe, C.J.1    Kohane, I.S.2    Butte, A.J.3
  • 65
    • 0036649020 scopus 로고    scopus 로고
    • Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
    • doi:10.1038/ng906
    • Wu LF, Hughes TR, Davierwala AP, Robinson MD, Stoughton R, Altschuler SJ (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31: 255-265. doi: 10. 1038/ng906.
    • (2002) Nat Genet , vol.31 , pp. 255-265
    • Wu, L.F.1    Hughes, T.R.2    Davierwala, A.P.3    Robinson, M.D.4    Stoughton, R.5    Altschuler, S.J.6
  • 66
    • 23144462925 scopus 로고    scopus 로고
    • GBA server: EST-based digital gene expression profiling
    • doi:10.1093/nar/gki480
    • Wu X, Walker MG, Luo J, Wei L (2005) GBA server: EST-based digital gene expression profiling. Nucleic Acids Res 33: W673-W676. doi: 10. 1093/nar/gki480.
    • (2005) Nucleic Acids Res , vol.33
    • Wu, X.1    Walker, M.G.2    Luo, J.3    Wei, L.4
  • 67
    • 14944364701 scopus 로고    scopus 로고
    • Spermine is a salicylate-independent endogenous inducer for both tobacco acidic pathogenesis-related proteins and resistance against tobacco mosaic virus infection
    • Yamakawa H, Kamada H, Satoh M, Ohashi Y (1998) Spermine is a salicylate-independent endogenous inducer for both tobacco acidic pathogenesis-related proteins and resistance against tobacco mosaic virus infection. Plant Physiol 118: 1213-1222.
    • (1998) Plant Physiol , vol.118 , pp. 1213-1222
    • Yamakawa, H.1    Kamada, H.2    Satoh, M.3    Ohashi, Y.4
  • 68
    • 0030581754 scopus 로고    scopus 로고
    • A rab11-like gene is developmentally regulated in ripening mango (Mangifera indica L.) fruit
    • Zainal Z, Tucker GA, Lycett GW (1996) A rab11-like gene is developmentally regulated in ripening mango (Mangifera indica L.) fruit. Biochim Biophys Acta 1314(3): 187-190.
    • (1996) Biochim Biophys Acta , vol.1314 , Issue.3 , pp. 187-190
    • Zainal, Z.1    Tucker, G.A.2    Lycett, G.W.3
  • 69
    • 33747361619 scopus 로고    scopus 로고
    • Cloning, expression, and mapping of GDP-D-mannose pyrophosphorylase cDNA from tomato (Lycopersicon esculentum)
    • doi:10.1016/S0379-4172(06)60108-X
    • Zou LP, Li HX, Ouyang B, Zhang JH, Ye ZB (2006) Cloning, expression, and mapping of GDP-D-mannose pyrophosphorylase cDNA from tomato (Lycopersicon esculentum). Acta Genet Sin 33(8): 757-764. doi: 10. 1016/S0379-4172(06)60108-X.
    • (2006) Acta Genet Sin , vol.33 , Issue.8 , pp. 757-764
    • Zou, L.P.1    Li, H.X.2    Ouyang, B.3    Zhang, J.H.4    Ye, Z.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.