-
1
-
-
0036065973
-
Silencing of a gene encoding a protein component of the oxygen-evolving complex of photosystem II enhances virus replication in plants
-
doi:10.1006/viro.2002.1332
-
Abbink TE, Peart JR, Mos TN, Baulcombe DC, Bol JF, Linthorst HJ (2002) Silencing of a gene encoding a protein component of the oxygen-evolving complex of photosystem II enhances virus replication in plants. Virology 295: 307-319. doi: 10. 1006/viro. 2002. 1332.
-
(2002)
Virology
, vol.295
, pp. 307-319
-
-
Abbink, T.E.1
Peart, J.R.2
Mos, T.N.3
Baulcombe, D.C.4
Bol, J.F.5
Linthorst, H.J.6
-
2
-
-
41849139980
-
Prediction of human disease genes by human-mouse conserved coexpression analysis
-
doi:10.1371/journal.pcbi.1000043
-
Ala U, Piro RM, Grassi E, Damasco C, Silengo L, Oti M, Provero P, Di Cunto F (2008) Prediction of human disease genes by human-mouse conserved coexpression analysis. PLoS Comput Biol 4: e1000043. doi: 10. 1371/journal. pcbi. 1000043.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Ala, U.1
Piro, R.M.2
Grassi, E.3
Damasco, C.4
Silengo, L.5
Oti, M.6
Provero, P.7
Di Cunto, F.8
-
3
-
-
33344476119
-
Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development
-
doi:10.1105/tpc.105.036053
-
Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ (2005) Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 17(11): 2954-2965. doi: 10. 1105/tpc. 105. 036053.
-
(2005)
Plant Cell
, vol.17
, Issue.11
, pp. 2954-2965
-
-
Alba, R.1
Payton, P.2
Fei, Z.3
McQuinn, R.4
Debbie, P.5
Martin, G.B.6
Tanksley, S.D.7
Giovannoni, J.J.8
-
4
-
-
0036793537
-
Ethylene biosynthesis and action in tomato: A model for climacteric fruit ripening
-
doi:10.1093/jxb/erf072
-
Alexander L, Grierson D (2002) Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening. J Exp Bot 53(377): 2039-2055. doi: 10. 1093/jxb/erf072.
-
(2002)
J Exp Bot
, vol.53
, Issue.377
, pp. 2039-2055
-
-
Alexander, L.1
Grierson, D.2
-
5
-
-
33748646985
-
Tobacco mosaic virus movement protein functions as a structural microtubule-associated protein
-
doi:10.1128/JVI.00540-06
-
Ashby J, Boutant E, Seemanpillai M, Groner A, Sambade A, Ritzenthaler C, Heinlein M (2006) Tobacco mosaic virus movement protein functions as a structural microtubule-associated protein. J Virol 80: 8329-8344. doi: 10. 1128/JVI. 00540-06.
-
(2006)
J Virol
, vol.80
, pp. 8329-8344
-
-
Ashby, J.1
Boutant, E.2
Seemanpillai, M.3
Groner, A.4
Sambade, A.5
Ritzenthaler, C.6
Heinlein, M.7
-
6
-
-
34548652782
-
Cloning and expression of GDP-D-mannose pyrophosphorylase gene and ascorbic acid content of acerola (Malpighia glabra L.) fruit at ripening stages
-
doi:10.1016/j.plaphy.2007.07.003
-
Badejo AA, Jeong ST, Goto-Yamamoto N, Esaka M (2007) Cloning and expression of GDP-D-mannose pyrophosphorylase gene and ascorbic acid content of acerola (Malpighia glabra L.) fruit at ripening stages. Plant Physiol Biochem 45(9): 665-672. doi: 10. 1016/j. plaphy. 2007. 07. 003.
-
(2007)
Plant Physiol Biochem
, vol.45
, Issue.9
, pp. 665-672
-
-
Badejo, A.A.1
Jeong, S.T.2
Goto-Yamamoto, N.3
Esaka, M.4
-
7
-
-
0034777661
-
The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome
-
doi:10.1104/pp.010265
-
Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J (2001) The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiol 127: 398-415. doi: 10. 1104/pp. 010265.
-
(2001)
Plant Physiol
, vol.127
, pp. 398-415
-
-
Barakat, A.1
Szick-Miranda, K.2
Chang, I.F.3
Guyot, R.4
Blanc, G.5
Cooke, R.6
Delseny, M.7
Bailey-Serres, J.8
-
8
-
-
19344374050
-
Similarities and differences in genome-wide expression data of six organisms
-
doi:10.1371/journal.pbio.0020009
-
Bergmann S, Ihmels J, Barkai N (2004) Similarities and differences in genome-wide expression data of six organisms. PLoS Biol 2: E9. doi: 10. 1371/journal. pbio. 0020009.
-
(2004)
PLoS Biol
, vol.2
-
-
Bergmann, S.1
Ihmels, J.2
Barkai, N.3
-
9
-
-
20744456475
-
Correlation between gene expression profiles and protein-protein interactions within and across genomes
-
doi:10.1093/bioinformatics/bti398
-
Bhardwaj N, Lu H (2005) Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics 21: 2730-2738. doi: 10. 1093/bioinformatics/bti398.
-
(2005)
Bioinformatics
, vol.21
, pp. 2730-2738
-
-
Bhardwaj, N.1
Lu, H.2
-
10
-
-
54049115518
-
Evidence of neutral transcriptome evolution in plants
-
doi:10.1111/j.1469-8137.2008.02640.x
-
Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PP, McNicol JW, May ST (2008) Evidence of neutral transcriptome evolution in plants. New Phytol 180(3): 587-593. doi: 10. 1111/j. 1469-8137. 2008. 02640. x.
-
(2008)
New Phytol
, vol.180
, Issue.3
, pp. 587-593
-
-
Broadley, M.R.1
White, P.J.2
Hammond, J.P.3
Graham, N.S.4
Bowen, H.C.5
Emmerson, Z.F.6
Fray, R.G.7
Iannetta, P.P.8
McNicol, J.W.9
May, S.T.10
-
11
-
-
33748938409
-
The role of ethylene in host-pathogen interactions
-
doi:10.1146/annurev.phyto.44.070505.143440
-
Broekaert WF, Delauré SL, De Bolle MFC, Cammue BPA (2006) The role of ethylene in host-pathogen interactions. Annu Rev Phytopathol 44: 393-416. doi: 10. 1146/annurev. phyto. 44. 070505. 143440.
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 393-416
-
-
Broekaert, W.F.1
Delauré, S.L.2
de Bolle, M.F.C.3
Cammue, B.P.A.4
-
12
-
-
33845665396
-
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior
-
doi:10.1104/pp.106.088534
-
Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor MI, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove LJ, Fernie AR (2006) Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol 142(4): 1380-1396. doi: 10. 1104/pp. 106. 088534.
-
(2006)
Plant Physiol
, vol.142
, Issue.4
, pp. 1380-1396
-
-
Carrari, F.1
Baxter, C.2
Usadel, B.3
Urbanczyk-Wochniak, E.4
Zanor, M.I.5
Nunes-Nesi, A.6
Nikiforova, V.7
Centero, D.8
Ratzka, A.9
Pauly, M.10
Sweetlove, L.J.11
Fernie, A.R.12
-
13
-
-
0024740033
-
Lnteraction of a developmentally regulated DNA-binding factor with sites flanking two different fruit-ripening genes from tomato
-
doi:10.1105/tpc.1.10.1025
-
Cordes S, Deikman J, Margossian LJ, Fischer RL (1989) lnteraction of a developmentally regulated DNA-binding factor with sites flanking two different fruit-ripening genes from tomato. Plant Cell 1(10): 1025-1034. doi: 10. 1105/tpc. 1. 10. 1025.
-
(1989)
Plant Cell
, vol.1
, Issue.10
, pp. 1025-1034
-
-
Cordes, S.1
Deikman, J.2
Margossian, L.J.3
Fischer, R.L.4
-
14
-
-
53549123850
-
Employing conservation of co-expression to improve functional inference
-
doi:10.1186/1752-0509-2-81
-
Daub CO, Sonnhammer EL (2008) Employing conservation of co-expression to improve functional inference. BMC Syst Biol 2: 81. doi: 10. 1186/1752-0509-2-81.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 81
-
-
Daub, C.O.1
Sonnhammer, E.L.2
-
16
-
-
24744468755
-
From single genes to co-expression networks: Extracting knowledge from barley functional genomics
-
doi:10.1007/s11103-005-8159-7
-
Faccioli P, Provero P, Herrmann C, Stanca AM, Morcia C, Terzi V (2005) From single genes to co-expression networks: extracting knowledge from barley functional genomics. Plant Mol Biol 58: 739-750. doi: 10. 1007/s11103-005-8159-7.
-
(2005)
Plant Mol Biol
, vol.58
, pp. 739-750
-
-
Faccioli, P.1
Provero, P.2
Herrmann, C.3
Stanca, A.M.4
Morcia, C.5
Terzi, V.6
-
17
-
-
34250678462
-
Major proteome variations associated with cherry tomato pericarp development and ripening
-
doi:10.1104/pp.106.092817
-
Faurobert M, Mihr C, Bertin N, Pawlowski T, Negroni L, Sommerer N, Causse M (2007) Major proteome variations associated with cherry tomato pericarp development and ripening. Plant Physiol 143(3): 1327-1346. doi: 10. 1104/pp. 106. 092817.
-
(2007)
Plant Physiol
, vol.143
, Issue.3
, pp. 1327-1346
-
-
Faurobert, M.1
Mihr, C.2
Bertin, N.3
Pawlowski, T.4
Negroni, L.5
Sommerer, N.6
Causse, M.7
-
18
-
-
0033167387
-
14-3-3 proteins: Eukaryotic regulatory proteins with many functions
-
doi:10.1023/A:1006211014713
-
Finnie C, Borch J, Collinge DB (1999) 14-3-3 proteins: eukaryotic regulatory proteins with many functions. Plant Mol Biol 40(4): 545-554. doi: 10. 1023/A: 1006211014713.
-
(1999)
Plant Mol Biol
, vol.40
, Issue.4
, pp. 545-554
-
-
Finnie, C.1
Borch, J.2
Collinge, D.B.3
-
19
-
-
2342631335
-
S-adenosylmethionine: Nothing goes to waste
-
doi:10.1016/j.tibs.2004.03.007
-
Fontecave M, Atta M, Mulliez E (2004) S-adenosylmethionine: nothing goes to waste. Trends Biochem Sci 29: 243-249. doi: 10. 1016/j. tibs. 2004. 03. 007.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 243-249
-
-
Fontecave, M.1
Atta, M.2
Mulliez, E.3
-
20
-
-
1842486262
-
Inter-species differences of co-expression of neighboring genes in eukaryotic genomes
-
doi:10.1186/1471-2164-5-4
-
Fukuoka Y, Inaoka H, Kohane IS (2004) Inter-species differences of co-expression of neighboring genes in eukaryotic genomes. BMC Genomics 5: 4. doi: 10. 1186/1471-2164-5-4.
-
(2004)
BMC Genomics
, vol.5
, pp. 4
-
-
Fukuoka, Y.1
Inaoka, H.2
Kohane, I.S.3
-
21
-
-
23644461190
-
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: Functional and evolutionary implications
-
doi:10.1007/sl1103-005-5346-5
-
Gachon CMM, Langlois-Meurinne M, Henry Y, Saindrenan P (2005) Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Mol Biol 58: 229-245. doi: 10. 1007/sl1103-005-5346-5.
-
(2005)
Plant Mol Biol
, vol.58
, pp. 229-245
-
-
Gachon, C.M.M.1
Langlois-Meurinne, M.2
Henry, Y.3
Saindrenan, P.4
-
22
-
-
28944431509
-
The choice of optimal distance measure in genome-wide datasets
-
doi:10.1093/bioinformatica/bti1201
-
Glazko G, Gordon A, Mushegian A (2005) The choice of optimal distance measure in genome-wide datasets. Bioinformatics 21(Suppl 3): iii3-iii11. doi: 10. 1093/bioinformatica/bti1201.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL 3
-
-
Glazko, G.1
Gordon, A.2
Mushegian, A.3
-
23
-
-
0029549778
-
Interaction of tobamovirus movement proteins with the plant cytoskeleton
-
doi:10.1126/science.270.5244.1983
-
Heinlein M, Epel BL, Padgett HS, Beachy RN (1995) Interaction of tobamovirus movement proteins with the plant cytoskeleton. Science 270: 1983-1985. doi: 10. 1126/science. 270. 5244. 1983.
-
(1995)
Science
, vol.270
, pp. 1983-1985
-
-
Heinlein, M.1
Epel, B.L.2
Padgett, H.S.3
Beachy, R.N.4
-
24
-
-
0242268504
-
RNA helicase domain of tobamovirus replicase executes cell-to-cell movement possibly through collaboration with its non conserved region
-
doi:10.1128/JVI.77.22.12357-12362.2003
-
Hirashima K, Watanabe Y (2003) RNA helicase domain of tobamovirus replicase executes cell-to-cell movement possibly through collaboration with its non conserved region. J Virol 77: 12357-12362. doi: 10. 1128/JVI. 77. 22. 12357-12362. 2003.
-
(2003)
J Virol
, vol.77
, pp. 12357-12362
-
-
Hirashima, K.1
Watanabe, Y.2
-
25
-
-
0036141992
-
Relating whole-genome expression data with protein-protein interactions
-
doi:10.1101/gr.205602
-
Jansen R, Greenbaum D, Gerstein M (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res 12: 37-46. doi: 10. 1101/gr. 205602.
-
(2002)
Genome Res
, vol.12
, pp. 37-46
-
-
Jansen, R.1
Greenbaum, D.2
Gerstein, M.3
-
26
-
-
0001840714
-
Ethylene-independent and ethylene-dependent biochemical changes in ripening tomatoes
-
Jeffery D, Smith C, Goodenough P, Prosser I, Grierson D (1984) Ethylene-independent and ethylene-dependent biochemical changes in ripening tomatoes. Plant Physiol 74(1): 32-38.
-
(1984)
Plant Physiol
, vol.74
, Issue.1
, pp. 32-38
-
-
Jeffery, D.1
Smith, C.2
Goodenough, P.3
Prosser, I.4
Grierson, D.5
-
27
-
-
2142640556
-
Enzyme activities in mitochondria isolated from ripening tomato fruit
-
doi:10.1007/BF00392366
-
Jeffery D, Goodenough PW, Weitzman PDJ (1986) Enzyme activities in mitochondria isolated from ripening tomato fruit. Planta 168(3): 390-394. doi: 10. 1007/BF00392366.
-
(1986)
Planta
, vol.168
, Issue.3
, pp. 390-394
-
-
Jeffery, D.1
Goodenough, P.W.2
Weitzman, P.D.J.3
-
28
-
-
33646844440
-
The Arabidopsis co-expression tool (ACT): A WWW-based tool and database for microarray-based gene expression analysis
-
doi:10.1111/j.1365-313X.2006.02681.x
-
Jen CH, Manfield IW, Michalopoulos I, Pinney JW, Willats WG, Gilmartin PM, Westhead DR (2006) The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. Plant J 46(2): 336-348. doi: 10. 1111/j. 1365-313X. 2006. 02681. x.
-
(2006)
Plant J
, vol.46
, Issue.2
, pp. 336-348
-
-
Jen, C.H.1
Manfield, I.W.2
Michalopoulos, I.3
Pinney, J.W.4
Willats, W.G.5
Gilmartin, P.M.6
Westhead, D.R.7
-
29
-
-
13444251367
-
Evolutionary significance of gene expression divergence
-
doi:10.1016/j.gene.2004.11.034
-
Jordan IK, Mariño-Ramírez L, Koonin EV (2005) Evolutionary significance of gene expression divergence. Gene 345(1): 119-126. doi: 10. 1016/j. gene. 2004. 11. 034.
-
(2005)
Gene
, vol.345
, Issue.1
, pp. 119-126
-
-
Jordan, I.K.1
Mariño-Ramírez, L.2
Koonin, E.V.3
-
30
-
-
19344372220
-
A neutral model of transcriptome evolution
-
doi:10.1371/journal.pbio.0020132
-
Khaitovich P, Weiss G, Lachmann M, Hellmann I, Enard W, Muetzel B, Wirkner U, Ansorge W, Pääbo S (2004) A neutral model of transcriptome evolution. PLoS Biol 2(5): E132. doi: 10. 1371/journal. pbio. 0020132.
-
(2004)
PLoS Biol
, vol.2
, Issue.5
-
-
Khaitovich, P.1
Weiss, G.2
Lachmann, M.3
Hellmann, I.4
Enard, W.5
Muetzel, B.6
Wirkner, U.7
Ansorge, W.8
Pääbo, S.9
-
31
-
-
33644753761
-
Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis
-
doi:10.1111/j.1365-313X.2006.02665.x
-
Lamkemeyer P, Laxa M, Collin V, Li W, Finkemeier I, Schöttler MA, Holtkamp V, Tognetti VB, Issakidis-Bourguet E, Kandlbinder A, Weis E, Miginiac-Maslow M, Dietz KJ (2006) Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis. Plant J 45: 968-981. doi: 10. 1111/j. 1365-313X. 2006. 02665. x.
-
(2006)
Plant J
, vol.45
, pp. 968-981
-
-
Lamkemeyer, P.1
Laxa, M.2
Collin, V.3
Li, W.4
Finkemeier, I.5
Schöttler, M.A.6
Holtkamp, V.7
Tognetti, V.B.8
Issakidis-Bourguet, E.9
Kandlbinder, A.10
Weis, E.11
Miginiac-Maslow, M.12
Dietz, K.J.13
-
32
-
-
0028487487
-
Two tomato fruit homologs of 14-3-3 mammalian brain proteins
-
Laughner B, Lawrence SD, Ferl RJ (1994) Two tomato fruit homologs of 14-3-3 mammalian brain proteins. Plant Physiol 105(4): 1457-1458.
-
(1994)
Plant Physiol
, vol.105
, Issue.4
, pp. 1457-1458
-
-
Laughner, B.1
Lawrence, S.D.2
Ferl, R.J.3
-
33
-
-
70349215646
-
RiceArrayNet: A database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice
-
doi:10.1104/pp.109.139030
-
Lee TH, Kim YK, Pham TT, Song SI, Kim JK, Kang KY, An G, Jung KH, Galbraith DW, Kim M, Yoon UH, Nahm BH (2009) RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice. Plant Physiol 151(1): 16-33. doi: 10. 1104/pp. 109. 139030.
-
(2009)
Plant Physiol
, vol.151
, Issue.1
, pp. 16-33
-
-
Lee, T.H.1
Kim, Y.K.2
Pham, T.T.3
Song, S.I.4
Kim, J.K.5
Kang, K.Y.6
An, G.7
Jung, K.H.8
Galbraith, D.W.9
Kim, M.10
Yoon, U.H.11
Nahm, B.H.12
-
34
-
-
33644809778
-
Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato
-
doi:10.1104/pp.105.063719
-
Lemaire-Chamley M, Petit J, Garcia V, Just D, Baldet P, Germain V, Fagard M, Mouassite M, Cheniclet C, Rothan C (2005) Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato. Plant Physiol 139(2): 750-769. doi: 10. 1104/pp. 105. 063719.
-
(2005)
Plant Physiol
, vol.139
, Issue.2
, pp. 750-769
-
-
Lemaire-Chamley, M.1
Petit, J.2
Garcia, V.3
Just, D.4
Baldet, P.5
Germain, V.6
Fagard, M.7
Mouassite, M.8
Cheniclet, C.9
Rothan, C.10
-
35
-
-
84986469573
-
Developmental regulation of the expression of alcohol dehydrogenase in ripening tomato fruits
-
doi:10.1111/j.1745-4514.1990.tb00804.x
-
Longhurst TJ, Tung HF, Brady CJ (1990) Developmental regulation of the expression of alcohol dehydrogenase in ripening tomato fruits. J Food Biochem 14(6): 421-433. doi: 10. 1111/j. 1745-4514. 1990. tb00804. x.
-
(1990)
J Food Biochem
, vol.14
, Issue.6
, pp. 421-433
-
-
Longhurst, T.J.1
Tung, H.F.2
Brady, C.J.3
-
36
-
-
0030113339
-
Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells
-
Loraine AE, Yalovsky S, Fabry S, Gruissem W (1996) Tomato Rab1A homologs as molecular tools for studying Rab geranylgeranyl transferase in plant cells. Plant Physiol 110(4): 1337-1347.
-
(1996)
Plant Physiol
, vol.110
, Issue.4
, pp. 1337-1347
-
-
Loraine, A.E.1
Yalovsky, S.2
Fabry, S.3
Gruissem, W.4
-
37
-
-
0034872903
-
Developmental abnormalities and reduced fruit softening in tomato plants expressing an antisense Rab11 GTPase gene
-
doi:10.1105/TPC.010069
-
Lu C, Zainal Z, Tucker GA, Lycett GW (2001) Developmental abnormalities and reduced fruit softening in tomato plants expressing an antisense Rab11 GTPase gene. Plant Cell 13(8): 1819-1833. doi: 10. 1105/TPC. 010069.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1819-1833
-
-
Lu, C.1
Zainal, Z.2
Tucker, G.A.3
Lycett, G.W.4
-
38
-
-
0242489811
-
Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA
-
Más P, Beachy RN (1999) Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA. J Cell Biol 147: 945-958.
-
(1999)
J Cell Biol
, vol.147
, pp. 945-958
-
-
Más, P.1
Beachy, R.N.2
-
39
-
-
0013599979
-
Molecular cloning and nucleotide sequence of a Rab7 small GTP-binding protein from apricot fruit. Gene expression during fruit ripening (PGR97-117)
-
Mbeguie-A-Mbeguie D, Gomez RM, Fils-Lycaon B (1997) Molecular cloning and nucleotide sequence of a Rab7 small GTP-binding protein from apricot fruit. Gene expression during fruit ripening (PGR97-117). Plant Physiol 114: 1569.
-
(1997)
Plant Physiol
, vol.114
, pp. 1569
-
-
Mbeguie-A-Mbeguie, D.1
Gomez, R.M.2
Fils-Lycaon, B.3
-
40
-
-
49249095893
-
Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data
-
doi:10.1371/journal.pone.0002439
-
Miozzi L, Piro RM, Rosa F, Ala U, Silengo L, Di Cunto F, Provero P (2008) Functional annotation and identification of candidate disease genes by computational analysis of normal tissue gene expression data. PLoS ONE 3: e2439. doi: 10. 1371/journal. pone. 0002439.
-
(2008)
PLoS ONE
, vol.3
-
-
Miozzi, L.1
Piro, R.M.2
Rosa, F.3
Ala, U.4
Silengo, L.5
Di Cunto, F.6
Provero, P.7
-
41
-
-
48449091196
-
GeneCAT-novel webtools that combine BLAST and co-expression analyses
-
Web Server issue,doi:10.1093/nar/gkn292
-
Mutwil M, Obro J, Willats WG, Persson S (2008) GeneCAT-novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res 36(Web Server issue): W320-W326. doi: 10. 1093/nar/gkn292.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Mutwil, M.1
Obro, J.2
Willats, W.G.3
Persson, S.4
-
42
-
-
38549180536
-
COXPRESdb: A database of coexpressed gene networks in mammals
-
doi:10.1093/nar/gkm840
-
Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K (2008) COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res 36: D77-D82. doi: 10. 1093/nar/gkm840.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Obayashi, T.1
Hayashi, S.2
Shibaoka, M.3
Saeki, M.4
Ohta, H.5
Kinoshita, K.6
-
43
-
-
43749122355
-
Conserved co-expression for candidate disease gene prioritization
-
doi:10.1186/1471-2105-9-208
-
Oti M, van Reeuwijk J, Huynen M, Brunner H (2008) Conserved co-expression for candidate disease gene prioritization. BMC Bioinformatics 9: 208. doi: 10. 1186/1471-2105-9-208.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 208
-
-
Oti, M.1
van Reeuwijk, J.2
Huynen, M.3
Brunner, H.4
-
44
-
-
13244255460
-
CLOE: Identification of putative functional relationships among genes by comparison of expression profiles between two species
-
doi:10.1186/1471-2105-5-179
-
Pellegrino M, Provero P, Silengo L, Di Cunto F (2004) CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species. BMC Bioinformatics 5: 179-189. doi: 10. 1186/1471-2105-5-179.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 179-189
-
-
Pellegrino, M.1
Provero, P.2
Silengo, L.3
Di Cunto, F.4
-
45
-
-
0027674297
-
CDNA cloning and characterisation of novel ripening-related mRNAs with altered patterns of accumulation in the ripening inhibitor (rin) tomato ripening mutant
-
doi:10.1007/BF00021431
-
Picton S, Gray J, Barton S, AbuBakar U, Lowe A, Grierson D (1993) cDNA cloning and characterisation of novel ripening-related mRNAs with altered patterns of accumulation in the ripening inhibitor (rin) tomato ripening mutant. Plant Mol Biol 23(1): 193-207. doi: 10. 1007/BF00021431.
-
(1993)
Plant Mol Biol
, vol.23
, Issue.1
, pp. 193-207
-
-
Picton, S.1
Gray, J.2
Barton, S.3
Abubakar, U.4
Lowe, A.5
Grierson, D.6
-
46
-
-
0031939893
-
The emerging problem of tospovirus infection and nonconventional methods of control
-
doi:10.1016/S0966-842X(97)01173-6
-
Prins M, Goldbach R (1998) The emerging problem of tospovirus infection and nonconventional methods of control. Trends Microbiol 6: 31-35. doi: 10. 1016/S0966-842X(97)01173-6.
-
(1998)
Trends Microbiol
, vol.6
, pp. 31-35
-
-
Prins, M.1
Goldbach, R.2
-
47
-
-
42149116826
-
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
-
doi:10.1038/msb.2008.19
-
Ramani AK, Li Z, Hart TG, Carlson MW, Boutz DR, Marcotte EM (2008) A map of human protein interactions derived from co-expression of human mRNAs and their orthologs. Mol Syst Biol 4: 180. doi: 10. 1038/msb. 2008. 19.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 180
-
-
Ramani, A.K.1
Li, Z.2
Hart, T.G.3
Carlson, M.W.4
Boutz, D.R.5
Marcotte, E.M.6
-
48
-
-
0002129975
-
Quantification on the LightCycler
-
S. C. Meuer, C. Wittwer, and K. Nakagawara (Eds.), Heidelberg: Springer
-
Rasmussen R (2001) Quantification on the LightCycler. In: Meuer SC, Wittwer C, Nakagawara K (eds) Rapid cycle real-time PCR methods and applications. Springer, Heidelberg, pp 21-34.
-
(2001)
Rapid Cycle Real-Time PCR Methods and Applications
, pp. 21-34
-
-
Rasmussen, R.1
-
49
-
-
2542430082
-
Methionine metabolism in plants: Chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol
-
doi:10.1074/jbc.M313250200
-
Ravanel S, Block MA, Rippert P, Jabrin S, Curien G, Rébeillé F, Douce R (2004) Methionine metabolism in plants: chloroplasts are autonomous for de novo methionine synthesis and can import S-adenosylmethionine from the cytosol. J Biol Chem 279(21): 22548-22557. doi: 10. 1074/jbc. M313250200.
-
(2004)
J Biol Chem
, vol.279
, Issue.21
, pp. 22548-22557
-
-
Ravanel, S.1
Block, M.A.2
Rippert, P.3
Jabrin, S.4
Curien, G.5
Rébeillé, F.6
Douce, R.7
-
50
-
-
25444513755
-
Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts
-
doi:10.1186/1471-2164-6-124
-
Rensink WA, Lee Y, Liu J, Iobst S, Ouyang S, Buell CR (2005) Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts. BMC Genomics 6: 124-138. doi: 10. 1186/1471-2164-6-124.
-
(2005)
BMC Genomics
, vol.6
, pp. 124-138
-
-
Rensink, W.A.1
Lee, Y.2
Liu, J.3
Iobst, S.4
Ouyang, S.5
Buell, C.R.6
-
51
-
-
0035999984
-
Binary analysis and optimization-based normalization of gene expression data
-
doi:10.1093/bioinformatics/18.4.555
-
Shmulevich I, Zhang W (2002) Binary analysis and optimization-based normalization of gene expression data. Bioinformatics 18(4): 555-565. doi: 10. 1093/bioinformatics/18. 4. 555.
-
(2002)
Bioinformatics
, vol.18
, Issue.4
, pp. 555-565
-
-
Shmulevich, I.1
Zhang, W.2
-
52
-
-
0034986111
-
The Rab GTPase family
-
REVIEWS3007. doi: 10. 1186/gb-2001-2-5-reviews3007
-
Stenmark H, Olkkonen VM (2001) The Rab GTPase family. Genome Biol 2(5): REVIEWS3007. doi: 10. 1186/gb-2001-2-5-reviews3007.
-
(2001)
Genome Biol
, vol.2
, Issue.5
-
-
Stenmark, H.1
Olkkonen, V.M.2
-
53
-
-
0036772367
-
Conservation of gene co-regulation in prokaryotes and eukaryotes
-
doi:10.1016/S0167-7799(02)02032-2
-
Teichmann SA, Babu MM (2002) Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends Biotechnol 20: 407-410. doi: 10. 1016/S0167-7799(02)02032-2.
-
(2002)
Trends Biotechnol
, vol.20
, pp. 407-410
-
-
Teichmann, S.A.1
Babu, M.M.2
-
54
-
-
0030299223
-
Interactions between the soil-borne root pathogen Phytophthora nicotianae var parasitica and arbuscular mycorrhizal fungus Glomus mosseae in tomato plants
-
doi:10.1007/BF02257525
-
Trotta A, Varese GC, Gnavi E, Fusconi A, Sampò S, Berta G (1996) Interactions between the soil-borne root pathogen Phytophthora nicotianae var parasitica and arbuscular mycorrhizal fungus Glomus mosseae in tomato plants. Plant Soil 185: 199-209. doi: 10. 1007/BF02257525.
-
(1996)
Plant Soil
, vol.185
, pp. 199-209
-
-
Trotta, A.1
Varese, G.C.2
Gnavi, E.3
Fusconi, A.4
Sampò, S.5
Berta, G.6
-
55
-
-
70449115789
-
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
-
doi:10.1111/j.1365-3040.2009.02040.x
-
Usadel B, Obayashi T, Mutwil M, Giorgi FM, Bassel GW, Tanimoto M, Chow A, Steinhauser D, Persson S, Provart NJ (2009) Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ 32: 1633-1651. doi: 10. 1111/j. 1365-3040. 2009. 02040. x.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
56
-
-
0037407924
-
Predicting gene function by conserved co-expression
-
doi:10.1016/S0168-9525(03)00056-8
-
van Noort V, Snel B, Huynen MA (2003) Predicting gene function by conserved co-expression. Trends Genet 19: 238-242. doi: 10. 1016/S0168-9525(03)00056-8.
-
(2003)
Trends Genet
, vol.19
, pp. 238-242
-
-
van Noort, V.1
Snel, B.2
Huynen, M.A.3
-
57
-
-
0033670949
-
Polyamines in plant-microbe interactions
-
doi:10.1006/pmpp.2000.0286
-
Walters DR (2000) Polyamines in plant-microbe interactions. Physiol Mol Plant Pathol 57: 137-146. doi: 10. 1006/pmpp. 2000. 0286.
-
(2000)
Physiol Mol Plant Pathol
, vol.57
, pp. 137-146
-
-
Walters, D.R.1
-
58
-
-
0038275915
-
Resistance to plant pathogens: Possible roles for free polyamines and polyamine catabolism
-
doi:10.1046/j.1469-8137.2003.00802.x
-
Walters D (2003) Resistance to plant pathogens: possible roles for free polyamines and polyamine catabolism. New Phytol 159: 109-115. doi: 10. 1046/j. 1469-8137. 2003. 00802. x.
-
(2003)
New Phytol
, vol.159
, pp. 109-115
-
-
Walters, D.1
-
59
-
-
0036274678
-
Ethylene biosynthesis and signaling networks
-
Wang KL, Li H, Ecker JR (2002) Ethylene biosynthesis and signaling networks. Plant Cell 14(Suppl): S131-S151.
-
(2002)
Plant Cell
, vol.14
, Issue.SUPPL
-
-
Wang, K.L.1
Li, H.2
Ecker, J.R.3
-
60
-
-
12544249634
-
Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance
-
doi:10.1007/s11103-004-0113-6
-
Wang H, Huang Z, Chen Q, Zhang Z, Zhang H, Wu Y, Huang D, Huang R (2004a) Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance. Plant Mol Biol 55(2): 183-192. doi: 10. 1007/s11103-004-0113-6.
-
(2004)
Plant Mol Biol
, vol.55
, Issue.2
, pp. 183-192
-
-
Wang, H.1
Huang, Z.2
Chen, Q.3
Zhang, Z.4
Zhang, H.5
Wu, Y.6
Huang, D.7
Huang, R.8
-
61
-
-
2442445139
-
Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response
-
doi:10.1016/j.tplants.2004.03.006
-
Wang W, Vinocur B, Shoseyov O, Altman A (2004b) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9(5): 244-252. doi: 10. 1016/j. tplants. 2004. 03. 006.
-
(2004)
Trends Plant Sci
, vol.9
, Issue.5
, pp. 244-252
-
-
Wang, W.1
Vinocur, B.2
Shoseyov, O.3
Altman, A.4
-
62
-
-
27244434212
-
Antisense suppression of deoxyhypusine synthase in tomato delays fruit softening and alters growth and development
-
doi:10.1104/pp.105.060194
-
Wang TW, Zhang CG, Wu W, Nowack LM, Madey E, Thompson JE (2005) Antisense suppression of deoxyhypusine synthase in tomato delays fruit softening and alters growth and development. Plant Physiol 138(3): 1372-1382. doi: 10. 1104/pp. 105. 060194.
-
(2005)
Plant Physiol
, vol.138
, Issue.3
, pp. 1372-1382
-
-
Wang, T.W.1
Zhang, C.G.2
Wu, W.3
Nowack, L.M.4
Madey, E.5
Thompson, J.E.6
-
63
-
-
33646170036
-
Euchromatin and pericentromeric heterochromatin: Comparative composition in the tomato genome
-
doi:10.1534/genetics.106.055772
-
Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD (2006) Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome. Genetics 172: 2529-2540. doi: 10. 1534/genetics. 106. 055772.
-
(2006)
Genetics
, vol.172
, pp. 2529-2540
-
-
Wang, Y.1
Tang, X.2
Cheng, Z.3
Mueller, L.4
Giovannoni, J.5
Tanksley, S.D.6
-
64
-
-
25444476441
-
Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks
-
doi:10.1186/1471-2105-6-227
-
Wolfe CJ, Kohane IS, Butte AJ (2005) Systematic survey reveals general applicability of guilt-by-association within gene coexpression networks. BMC Bioinformatics 6: 227-237. doi: 10. 1186/1471-2105-6-227.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 227-237
-
-
Wolfe, C.J.1
Kohane, I.S.2
Butte, A.J.3
-
65
-
-
0036649020
-
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
-
doi:10.1038/ng906
-
Wu LF, Hughes TR, Davierwala AP, Robinson MD, Stoughton R, Altschuler SJ (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31: 255-265. doi: 10. 1038/ng906.
-
(2002)
Nat Genet
, vol.31
, pp. 255-265
-
-
Wu, L.F.1
Hughes, T.R.2
Davierwala, A.P.3
Robinson, M.D.4
Stoughton, R.5
Altschuler, S.J.6
-
66
-
-
23144462925
-
GBA server: EST-based digital gene expression profiling
-
doi:10.1093/nar/gki480
-
Wu X, Walker MG, Luo J, Wei L (2005) GBA server: EST-based digital gene expression profiling. Nucleic Acids Res 33: W673-W676. doi: 10. 1093/nar/gki480.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Wu, X.1
Walker, M.G.2
Luo, J.3
Wei, L.4
-
67
-
-
14944364701
-
Spermine is a salicylate-independent endogenous inducer for both tobacco acidic pathogenesis-related proteins and resistance against tobacco mosaic virus infection
-
Yamakawa H, Kamada H, Satoh M, Ohashi Y (1998) Spermine is a salicylate-independent endogenous inducer for both tobacco acidic pathogenesis-related proteins and resistance against tobacco mosaic virus infection. Plant Physiol 118: 1213-1222.
-
(1998)
Plant Physiol
, vol.118
, pp. 1213-1222
-
-
Yamakawa, H.1
Kamada, H.2
Satoh, M.3
Ohashi, Y.4
-
68
-
-
0030581754
-
A rab11-like gene is developmentally regulated in ripening mango (Mangifera indica L.) fruit
-
Zainal Z, Tucker GA, Lycett GW (1996) A rab11-like gene is developmentally regulated in ripening mango (Mangifera indica L.) fruit. Biochim Biophys Acta 1314(3): 187-190.
-
(1996)
Biochim Biophys Acta
, vol.1314
, Issue.3
, pp. 187-190
-
-
Zainal, Z.1
Tucker, G.A.2
Lycett, G.W.3
-
69
-
-
33747361619
-
Cloning, expression, and mapping of GDP-D-mannose pyrophosphorylase cDNA from tomato (Lycopersicon esculentum)
-
doi:10.1016/S0379-4172(06)60108-X
-
Zou LP, Li HX, Ouyang B, Zhang JH, Ye ZB (2006) Cloning, expression, and mapping of GDP-D-mannose pyrophosphorylase cDNA from tomato (Lycopersicon esculentum). Acta Genet Sin 33(8): 757-764. doi: 10. 1016/S0379-4172(06)60108-X.
-
(2006)
Acta Genet Sin
, vol.33
, Issue.8
, pp. 757-764
-
-
Zou, L.P.1
Li, H.X.2
Ouyang, B.3
Zhang, J.H.4
Ye, Z.B.5
|