메뉴 건너뛰기




Volumn 56, Issue 1, 2010, Pages 77-90

Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid Order Oegopsida

Author keywords

Cephalopoda; Evolution; Molecular systematics; Oegopsida; Phylogenetics

Indexed keywords

ANIMAL; ARTICLE; BAYES THEOREM; CEPHALOPOD; CLASSIFICATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; STATISTICAL MODEL;

EID: 77953172308     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2010.03.025     Document Type: Article
Times cited : (56)

References (45)
  • 1
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G., Dwarkadas S., Huelsenbeck J.P., and Ronquist F. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20 (2004) 407-415
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 2
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. A review of long-branch attraction. Cladistics 21 (2005) 163-193
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 3
    • 0000938152 scopus 로고
    • Phylogenetic analysis and systematization of the Cephalopoda (Mollusca)
    • Berthold T., and Engeser T. Phylogenetic analysis and systematization of the Cephalopoda (Mollusca). Verh. Naturwiss. Ver. Hamburg 29 (1987) 187-220
    • (1987) Verh. Naturwiss. Ver. Hamburg , vol.29 , pp. 187-220
    • Berthold, T.1    Engeser, T.2
  • 4
    • 0033303606 scopus 로고    scopus 로고
    • Phylogenetic analysis of cytochrome c oxidase I sequences to determine higher-level relationships within the coleoid cephalopods
    • Carlini D.B., and Graves J.B. Phylogenetic analysis of cytochrome c oxidase I sequences to determine higher-level relationships within the coleoid cephalopods. Bull. Mar. Sci. 64 (1999) 57-76
    • (1999) Bull. Mar. Sci. , vol.64 , pp. 57-76
    • Carlini, D.B.1    Graves, J.B.2
  • 6
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 5 (2004) 1792-1797
    • (2004) Nucleic Acids Res. , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R.C. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.C.5
  • 10
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A., and Rubin D.B. Inference from iterative simulation using multiple sequences. Stat. Sci. 7 4 (1992) 457-511
    • (1992) Stat. Sci. , vol.7 , Issue.4 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 11
    • 0030052735 scopus 로고    scopus 로고
    • First molecular evidence for the existence of a Tardigrada + Arthropoda clade
    • Giribet G., Carranza S., Baguna J., and Ribera C. First molecular evidence for the existence of a Tardigrada + Arthropoda clade. Mol. Biol. Evol. 13 (1996) 76-84
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 76-84
    • Giribet, G.1    Carranza, S.2    Baguna, J.3    Ribera, C.4
  • 12
    • 77953162690 scopus 로고    scopus 로고
    • Goloboff, P, Farris, S, Nixon, K, 2000. TNT (Tree analysis using new technology) Ver. 1.0. Available from
    • Goloboff, P., Farris, S., Nixon, K., 2000. TNT (Tree analysis using new technology) Ver. 1.0. Available from: www.cladistics.com/aboutTNT.html.
  • 13
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 14
    • 31144442881 scopus 로고    scopus 로고
    • Automatic assessment of alignment quality
    • Lassman T., and Sonnhammer E.L.L. Automatic assessment of alignment quality. Nucleic Acids Res. 33 22 (2005) 7120-7128
    • (2005) Nucleic Acids Res. , vol.33 , Issue.22 , pp. 7120-7128
    • Lassman, T.1    Sonnhammer, E.L.L.2
  • 15
    • 11144242210 scopus 로고    scopus 로고
    • A combined approach to the phylogeny of Cephalopoda (Mollusca)
    • Lindgren A.R., Giribet G., and Nishiguchi M.K. A combined approach to the phylogeny of Cephalopoda (Mollusca). Cladistics 20 (2004) 454-486
    • (2004) Cladistics , vol.20 , pp. 454-486
    • Lindgren, A.R.1    Giribet, G.2    Nishiguchi, M.K.3
  • 16
    • 34848880203 scopus 로고    scopus 로고
    • The impact of length-variable data and alignment criterion on the phylogeny of Decapodiformes (Mollusca: Cephalopoda)
    • Lindgren A.R., and Daly M. The impact of length-variable data and alignment criterion on the phylogeny of Decapodiformes (Mollusca: Cephalopoda). Cladistics 23 (2007) 464-476
    • (2007) Cladistics , vol.23 , pp. 464-476
    • Lindgren, A.R.1    Daly, M.2
  • 19
    • 67649961233 scopus 로고    scopus 로고
    • Cephalopoda
    • Ponder W.F., and Lindberg D.R. (Eds), University of California Press, Los Angeles
    • Nishiguchi M.K., and Mapes R.H. Cephalopoda. In: Ponder W.F., and Lindberg D.R. (Eds). Phylogeny and Evolution of the Mollusca (2008), University of California Press, Los Angeles 163-200
    • (2008) Phylogeny and Evolution of the Mollusca , pp. 163-200
    • Nishiguchi, M.K.1    Mapes, R.H.2
  • 21
    • 0035722246 scopus 로고    scopus 로고
    • Biases in maximum likelihood and parsimony: a simulation approach to a 10-taxon case
    • Pol D., and Siddall M.E. Biases in maximum likelihood and parsimony: a simulation approach to a 10-taxon case. Cladistics 17 3 (2001) 266-281
    • (2001) Cladistics , vol.17 , Issue.3 , pp. 266-281
    • Pol, D.1    Siddall, M.E.2
  • 22
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 9 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 23
    • 77953169479 scopus 로고    scopus 로고
    • Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer.
    • Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer.
  • 24
    • 0042313795 scopus 로고    scopus 로고
    • Conflicting phylogenetic signals at the base of the metazoan tree
    • Rokas A., King N., Finnerty J., and Carroll S.B. Conflicting phylogenetic signals at the base of the metazoan tree. Evol. Dev. 5 4 (2003) 346-359
    • (2003) Evol. Dev. , vol.5 , Issue.4 , pp. 346-359
    • Rokas, A.1    King, N.2    Finnerty, J.3    Carroll, S.B.4
  • 25
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 26
    • 77953147860 scopus 로고    scopus 로고
    • Roper, C.F.E. 1998. Architeuthidae Pfeffer 1900. Architeuthis. Giant squids. Version 01 January 1998. http://tolweb.org/Architeuthis/19408. In: The Tree of Life Web Project. http://tolweb.org/.
    • Roper, C.F.E. 1998. Architeuthidae Pfeffer 1900. Architeuthis. Giant squids. Version 01 January 1998. http://tolweb.org/Architeuthis/19408. In: The Tree of Life Web Project. http://tolweb.org/.
  • 27
    • 0005449545 scopus 로고
    • Comparative morphology and function of dermal structures in oceanic squids (Cephalopoda)
    • Roper C.F.E., and Lu C.C. Comparative morphology and function of dermal structures in oceanic squids (Cephalopoda). Smithsonian Contributions Zool. 493 (1990) 1-40
    • (1990) Smithsonian Contributions Zool. , vol.493 , pp. 1-40
    • Roper, C.F.E.1    Lu, C.C.2
  • 28
    • 0002574450 scopus 로고
    • An illustrated key to the families of the order Teuthoidea (Cephalopoda)
    • Roper C.F.E., Young R.E., and Voss G.L. An illustrated key to the families of the order Teuthoidea (Cephalopoda). Smithsonian Contributions to Zool. 13 (1969) 1-14
    • (1969) Smithsonian Contributions to Zool. , vol.13 , pp. 1-14
    • Roper, C.F.E.1    Young, R.E.2    Voss, G.L.3
  • 29
    • 0342470123 scopus 로고
    • First records of juvenile giant squid Architeuthis (Cephalopoda: Oegopsida)
    • Roper C.F.E., and Young R.E. First records of juvenile giant squid Architeuthis (Cephalopoda: Oegopsida). Proc. Biol. Soc. Wash. 85 16 (1972) 205-222
    • (1972) Proc. Biol. Soc. Wash. , vol.85 , Issue.16 , pp. 205-222
    • Roper, C.F.E.1    Young, R.E.2
  • 30
    • 0000215283 scopus 로고    scopus 로고
    • Success of parsimony in the four-taxon case: long-branch repulsion by likelihood on the Farris zone
    • Siddall M.E. Success of parsimony in the four-taxon case: long-branch repulsion by likelihood on the Farris zone. Cladistics 14 (1998) 209-220
    • (1998) Cladistics , vol.14 , pp. 209-220
    • Siddall, M.E.1
  • 32
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 21 (2006) 2688-2690
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 33
    • 26444567260 scopus 로고    scopus 로고
    • Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework
    • Strugnell J., Norman M., Drummond A.J., and Cooper A. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework. Mol. Phylogenet. Evol. 37 2 (2005) 426-441
    • (2005) Mol. Phylogenet. Evol. , vol.37 , Issue.2 , pp. 426-441
    • Strugnell, J.1    Norman, M.2    Drummond, A.J.3    Cooper, A.4
  • 34
    • 36448968267 scopus 로고    scopus 로고
    • Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment, and analysis methods
    • Strugnell J., and Nishiguchi M.K. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment, and analysis methods. J. Molluscan Stud. 73 4 (2007) 399-410
    • (2007) J. Molluscan Stud. , vol.73 , Issue.4 , pp. 399-410
    • Strugnell, J.1    Nishiguchi, M.K.2
  • 35
    • 77953143791 scopus 로고    scopus 로고
    • Lepidoteuthid families
    • Version 01, The Tree of Life Web Project, http://tolweb.org
    • Vecchione, M., Young, R.E. 1999. Lepidoteuthid families. Version 01 January 1999 (under construction). http://tolweb.org/Lepidoteuthid_families/19416. In: The Tree of Life Web Project. http://tolweb.org.
    • (1999) January 1999 (under construction)
    • Vecchione, M.1    Young, R.E.2
  • 36
    • 0000829233 scopus 로고
    • Phylogenetic relationships of the Cranchiidae (Cephalopoda: Oegopsida)
    • Voss N.A., and Voss R.S. Phylogenetic relationships of the Cranchiidae (Cephalopoda: Oegopsida). Bull. Mar. Sci. 30 (1983) 365-412
    • (1983) Bull. Mar. Sci. , vol.30 , pp. 365-412
    • Voss, N.A.1    Voss, R.S.2
  • 37
    • 0031084115 scopus 로고    scopus 로고
    • The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology
    • Whiting M.F., Carpenter J.M., Wheeler Q.D., and Wheeler W.C. The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Syst. Biol. 46 (1997) 1-68
    • (1997) Syst. Biol. , vol.46 , pp. 1-68
    • Whiting, M.F.1    Carpenter, J.M.2    Wheeler, Q.D.3    Wheeler, W.C.4
  • 38
    • 0026350122 scopus 로고
    • Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae)
    • Xiong B., and Kocher T.D. Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome 34 (1991) 306-311
    • (1991) Genome , vol.34 , pp. 306-311
    • Xiong, B.1    Kocher, T.D.2
  • 39
    • 0008526465 scopus 로고    scopus 로고
    • Phylogeny of the "Enoploteuthid" Families
    • Voss N.A., Vecchione M.V., Toll R.B., and Sweeney M.J. (Eds), Smithsonian Institution Press, Washington, DC
    • Young R.E., and Harman R.F. Phylogeny of the "Enoploteuthid" Families. In: Voss N.A., Vecchione M.V., Toll R.B., and Sweeney M.J. (Eds). International Workshop on Systematics and Biogeography of Cephalopods (1998), Smithsonian Institution Press, Washington, DC 257-271
    • (1998) International Workshop on Systematics and Biogeography of Cephalopods , pp. 257-271
    • Young, R.E.1    Harman, R.F.2
  • 40
    • 0041039795 scopus 로고
    • A monograph of the Cephalopoda of the North Atlantic: the family Cycloteuthidae
    • Young R.E., and Roper C.F.E. A monograph of the Cephalopoda of the North Atlantic: the family Cycloteuthidae. Smithsonian Contributions Zool. 5 (1969) 1-24
    • (1969) Smithsonian Contributions Zool. , vol.5 , pp. 1-24
    • Young, R.E.1    Roper, C.F.E.2
  • 41
    • 77953144721 scopus 로고    scopus 로고
    • Histioteuthid families
    • Version 01, The Tree of Life Web Project, http://tolweb.org
    • Young, R.E., Vecchione, M., 1996. Histioteuthid families. Version 01 January 1996 (under construction). http://tolweb.org/Histioteuthid_families/19415/. In: The Tree of Life Web Project. http://tolweb.org.
    • (1996) January 1996 (under construction)
    • Young, R.E.1    Vecchione, M.2
  • 42
    • 0038374979 scopus 로고    scopus 로고
    • Evolution of the gills in the Octopodiformes
    • Young R.E., and Vecchione M. Evolution of the gills in the Octopodiformes. Bull. Mar. Sci. 71 (2002) 1003-1018
    • (2002) Bull. Mar. Sci. , vol.71 , pp. 1003-1018
    • Young, R.E.1    Vecchione, M.2
  • 43
    • 77953145455 scopus 로고    scopus 로고
    • Young, R.E, Vecchione, M. 2004. Oegopsida Orbigny, 1945. Version 18 August 2004 (under construction). http://tolweb.org/Oegopsida/19407. In: The Tree of Life Web Project. http://tolweb.org.
    • Young, R.E, Vecchione, M. 2004. Oegopsida Orbigny, 1945. Version 18 August 2004 (under construction). http://tolweb.org/Oegopsida/19407. In: The Tree of Life Web Project. http://tolweb.org.
  • 44
    • 77953168563 scopus 로고    scopus 로고
    • Young, R.E., Vecchione, M., Mangold, K.M. 2008. Decapodiformes Leach, 1817. Squids, cuttlefishes and their relatives. Version 21 April 2008. http://tolweb.org/Decapodiformes/19404. In: The Tree of Life Web Project. http://tolweb.org.
    • Young, R.E., Vecchione, M., Mangold, K.M. 2008. Decapodiformes Leach, 1817. Squids, cuttlefishes and their relatives. Version 21 April 2008. http://tolweb.org/Decapodiformes/19404. In: The Tree of Life Web Project. http://tolweb.org.
  • 45
    • 77953141645 scopus 로고    scopus 로고
    • Chiroteuthid families
    • Version 21, The Tree of Life Web Project, http://tolweb.org
    • Young, R.E., Vecchione, M. 2008. Chiroteuthid families. Version 21 April 2008 (under construction). http://tolweb.org/Chiroteuthid_families/19410. In: The Tree of Life Web Project. http://tolweb.org.
    • (2008) April 2008 (under construction)
    • Young, R.E.1    Vecchione, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.