A combined approach to the phylogeny of Cephalopoda (Mollusca)

Cladistics

Volumn 20, Issue 5, 2004, Pages 454-486

  Lindgren, A R ^a,c   Giribet, G ^b   Nishiguchi, M K ^a  

^a NEW MEXICO STATE UNIVERSITY   (United States)

^b HARVARD UNIVERSITY   (United States)

^c OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CEPHALOPOD; CLADISTICS; PHYLOGENY;

CEPHALOPODA; COLEOIDEA; DECABRACHIA; LOLIGINIDAE; MOLLUSCA; NAUTILOIDEA; OCTOBRACHIA; OCTOPODA; OEGOPSIDA; SEPIIDA; SEPIIDAE; SEPIOIDEA; SEPIOLIDA; SPIRULIDA; TEUTHIDA; VAMPYROMORPHA;

EID: 11144242210     PISSN: 07483007     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2004.00032.x     Document Type: Article

References (92)

1. Arnold, J.M., Williams-Arnold, L.D., 1978. Spermiogenesis of Nautilus pompilius. J. Exp Zool. 205, 13-26.
2. Bartolomaeus. T., 1989. Larvale Nierenorgane bei Lepidochiton cinereus (Polyplacophora) und Aeolidia papillosa (Gastropoda). Zoomorphology, 108, 297-307.
3. Beesley, P.L., Ross, G.J.B., Wells, A. (Eds.), 1998. Mollusca: The Southern Synthesis. Fauna of Australia. CSIRO Publishing, Melbourne.
4. Boletzky, S.V., 1982. Developmental aspects of the mantle complex in coleoid cephalopods. Malacologia, 23, 165-175.
5. Boletzky, S.V., 1987. Ontogenetic and phylogenetic aspects of the cephalopod circulatory system. Experientia, 43, 478-483.
6. Boletzky, S.V., 1999. Breve mise au point sur la classification des cephalopodes actuels. Bull. Soc. Zool. Fr. 124, 272-278.
7. Boletzky, S.V., 2003. Biology of early life stages in cephalopod molluscs. Adv. Mar. Biol. 44, 144-184.
8. Bonnaud, L., Boucher-Rodoni, R., Monnerott, M., 1997. Phylogeny of cephalopods inferred from mitochondrial DNA sequences. Mol. Phylogenetics Evol. 7, 44-54.
9. Budelmann, B.U.R., Schipp, Boletzky, 1997. Cephalopoda. In: Harrison, F.W., Kohn, A.J. (Eds.), Microscopic Anatomy of Invertebrates. Wiley-Liss, New York, pp. 119-414.
10. Carlini, D.B., Graves, J.E., 1999. Phylogenetic analysis of cytochrome c oxidase I sequences to determine higher-level relationships within the coleoid cephalopods. Bull. Mar. Sci. 64, 57-76.
11. Carlini, D.B., Reece, K.S., Graves, J.E., 2000. Actin gene family evolution and the phylogeny of coleoid cephalopods (Mollusca: Cephalopoda). Mol. Biol. Evol. 17, 1353-1370.
12. Carlini, D.B., Young, R.E., Vecchione, M.V., 2001. A molecular phylogeny of the Octopoda (Mollusca: Cephalopoda) evaluated in light of morphological evidence. Mol. Phylogenetics Evol. 21, 388-397.
13. Chun, C., 1914. The Cephalopoda. Keter Publishing House, Jerusalem.
14. Colgan, D.J., McLaughlan, A., Wilson, G.D.F., Livingston, S.P., Edgecombe, G.D., Macaranas, J., Cassis, G., Gray, M.R., 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Aust. J. Zool. 46, 419-437.
15. Denton, E.J., Gilpin-Brown, J.B., 1973. Flotation mechanisms in modern and fossil cephalopods. Adv. Mar. Biol. 11, 197-268.
16. Donoghue, M.J., Doyle, J.J., Gauthier, J., Kluge, A.G., Rowe, T., 1989. The importance of fossils in phylogeny reconstruction. Annu. Rev. Ecol. Syst, 20, 431-460.
17. Edgecombe, G.D., Giribet, G.D., Wheeler, W., 2002. Phylogeny of the Henicopidae (Chilopoda: Lithobiomorpha): a combined analysis of morphology and five molecular loci. Syst. Entomol. 27, 31-64.
18. Eernisse, D.J., Kluge, A.G., 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology. Mol. Biol. Evol. 10, 1170-1195.
19. Engeser, T., Bandel, 1988. Phylogenetic classification of coleoid cephalopods. In: Weidmann, J., Kullmann, J. (Eds.), Cephalopods - Present and Past. Schweizerbart'sche-Verlagsbuchhandlung, Stuttgart, pp. 105-115.
20. Farris, J.S., 1997. The future of phylogeny reconstruction. Zool. Scripta, 26, 303-311.
21. Farris, J.S., Albert, V.A., Källersjö, M., Lipscomb, D., Kluge, A.G., 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics, 12, 99-124.
22. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1995. Testing significance of incongruence. Cladistics, 10, 315-319.
23. Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R.C., 1994. DNA primers for amplification of mitochondrial cyctochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar. Biol. Biotechnol. 3, 294-299.
24. Franzén, A., 1955. Comparative Morphological Investigations into the spermiogenesis among Mollusca. Zool. Bidrag Fran Uppsala, 30, 399-456.
25. Franzén, A., 1958. On sperm morphology and acrosome filament formation in some Annelida, Echiuroidea and Tunicata. Zool. Bidrag Fran Uppsala, 33, 1-29.
26. Gauthier, J., Kluge, A.G., Rowe, T., 1988. Amniote phylogeny and the importance of fossils. Cladistics, 4, 105-209.
27. Giribet, G., 2002. Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian Explosion? Mol. Phylogenetics Evol. 23, 345-357.
28. Giribet, G., 2003. Stability in phylogenetic formulations, and its relationship to nodal support. Syst. Biol. 52, 554-564.
29. Giribet. G., Edgecombe, G.D., Wheeler, W.C., Babbitt, C., 2002. Phylogeny and systematic position of Opiliones: a combined analysis of chelicerate relationships using morphological and molecular data. Cladistics. 18, 5-70.
30. Giribet, G.D., Edgecombe, G.D., Wheeler, W.C., 2001. Arthropod phylogeny based on eight molecular loci and morphology. Nature, 413, 157-161.
31. Giribet, G., Carranza, S., Baguñà, J., Ribera, C., 1996. First molecular evidence for the existence of a Tardigrada + Arthropoda clade. Mol. Biol. Evol. 13, 76-84.
32. Giribet, G.D., Distel, M., Polz, M., Sterrer, W., Wheeler, W., 2000. Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology. Syst. Biol. 49, 539-562.
33. Giribet, G., Wheeler, W.C., 2001. Some unusual small-subunit ribosomal RNA sequences of metazoans. Am. Museum Novitates, 3337, 1-14.
34. Giribet, G.D., Wheeler, W.C., 2002. On bivalve phylogeny: a high-level analysis of the Bivalvia (Mollusca) based on combined morphology and DNA sequence data. Invertebrate Biology, 121, 271-324.
35. Goloboff, P.A., 1998. Nona, Version 2.0. Program available at http://www.cladistics.com.
36. Goloboff, P.A., 1999. Analyzing large data sets in reasonable times: solutions for composite optima. Cladistics, 15, S26-S34.
37. Haszprunar, G., 1988. On the origin and evolution of major gastropod groups, with special reference to the Streptoneura. J. Molluscan Studies, 54, 367-441.
38. Haszprunar, G., 2000. Is the Aplacophora monophyletic? A cladistic point of view. Am. Malacal. Bull. 15, 115-130.
39. Haszprunar, G., Wanninger, A., 2000. Molluscan muscle systems in development and evolution. J. Syst. Evol. Res. 38, 157-163.
40. Healy, J.M., 1989. Spermatozoa of the deep-sea cephalopod Vampyroteuthis infernalis Chun: ultrastructure and possible phylogenetic significance. Phil. Trans. R. Soc. 323, 589-600.
41. Healy, J.M., 1990a. Ultrastructure of spermatozoa in Spirula spirula - Systematic importance and comparison with other cephalopods. Helgoländer Meeresuntersuchungen, 44, 109-123.
42. Healy, J.M., 1990b. Ultrastructure of spermiogenesis in Vampyroteuthis infernalis Chun - A relict cephalopod mollusc. Helgoländer Meeresuntersuchungen, 44, 95-108.
43. Healy, J.M., 1993. Sperm and spermiogenesis in Opisthoteuthis persephone (Octopoda: Cirrata): ultrastructure, comparison with other cephalopods and evolutionary significance. J. Molluscan Studies, 59, 105-115.
44. Healy, J.M., 1996. Molluscan sperm ultrastructure: correlation with taxonomic units within Gastropoda, Cephalopoda and Bivalvia. In: Taylor, J.D. (Ed.), Molluscan Sperm Ultrastructure: Correlation with Taxonomic Units Within Gastropoda, Cephalopoda and Bivalvia. Oxford University Press, Oxford, pp. 99-113.
45. Herring, P.J., 1988. Luminescent organs. In: Wilbur, K.M. (Ed.), The Mollusca, Vol. 11. Academic Press, San Diego, pp. 449-485.
46. Hess, H.C., 1987. Comparative morphology, variability, and systematic applications of cephalopod spermatophores (Teuthoidea and Vampyromorpha). PhD Dissertation. University of Miami, FL.
47. Jeletzky, J.A., 1966. Comparative Morphology, Phylogeny, and Classification of Fossil Coleoidea, Paleontological Contributions: University of Kansas, Vol. 7, pp. 1-162.
48. Joubin, L., 1825/1924. Cephalopods from the Scientific Expedition of Prince Albert I of Monaco. Amerind Publishing, New Dehli.
49. Kluge, A.G., 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Zool. 38, 7-25.
50. Lee, P., Callerts, P., d. Couet, H.G., Martindale, M.Q., 2003. Cephalopod Hox genes and the origin of morphological novelties. Nature, 424, 1061-1065.
51. Madison, D.R., Madison, W.P., 2000. MacClade 4: Interactive Analysis of Phylogeny and Character Evolution, Version. 4.01. Sinauer Associates, MA.
52. Maxwell, W.L., 1974. Spermiogenesis of Eledone cirrhosa, Lamark (Cephalopoda: Octopoda). Proc. R. Soc. Lond. 186, 181-190.
53. Maxwell, W.L., 1975. Spermiogenesis of Eusepia officinalis (L.), Loligo forbesi (Steenstrup) and Alloteuthis subulata (L.) (Cephalopoda). Proc. R. Soc. Lond. 191, 527-535.
54. McFall-Ngai, M.J., Ruby, E.G., 1998. Sepiolids and Vibrios: when they first meet. Bioscience, 48, 257-265.
55. Mickevich, M.F., Farris, J.S., 1981. The implications of congruence in Menidia. Syst Zool. 27, 143-158.
56. Montgomery, M.K., McFall-Ngai, M., 1992. Embryonic development of the light organ of the sepiolid squid Euprymna scolopes Berry. Biol. Bull. 184, 296-308.
57. Naef, A., 1921/23. Fauna and Flora of the Bay of Naples. Keter Press, Jerusalem.
58. Naef, A., 1928. Cephalopoda Embryology. R. Friedlander & Sons, Berlin.
59. Nesis, K.N., 1987. Cephalopods of the World. T.F.H. Publications, Neptune City, Canada.
60. Nesis, K.N., 1998. Biodiversity and systematics in cephalopods: Unresolved problems require an integrated approach. Cephalopod biodiversity, ecology and evolution. S. Afr. J. Mar. Sci. 20, 165-173.
61. Nishiguchi, M.K., Lopez, J.E., Boletzky, S.V., 2004. Enlightenment of old ideas from new investigations: The evolution of bacteriogenic light organs in squids. Evol. Dev. 6, 41-49.
62. Nixon, K.C., 2002. Winclada, Version 1.00.08. Program available at http://www.cladistics.com.
63. Nixon, M., Young, J.Z., 2003. The Brains and Lives of Cephalopods. Oxford University Press, Oxford.
64. Okusu, A., Schwabe, E., Eernisse, D.J., Giribet, G., 2003. Towards a phylogeny of chitons (Mollusca, Polyplacophora) based on combined analysis of five molecular loci. Org. Diversity Evol. 3, 281-302.
65. Pfeffer, G., 1912. Die Cephalopoden der Plankton-Expedition. Pauls Press, New Dehli.
66. Pickford, G.E., 1939. A re-examination of the types of Melanoteuthis lucens Joubin. Bull. Inst. Océanographique, Monaco, 777, 1-12.
67. Piertney, S.B., Hudelot, C., Hochberg, F.G., Collins, M.A., 2003. Phylogenetic relationships among cirrate octopods (Mollusca: Cephalopoda) resolved using mitochondrial 16S ribosomal DNA sequences. Mol. Phylogenetics Evol. 27, 348-353.
68. Ponder, W.F., Lindberg, D.R., 1997. Towards a phylogeny of gastropod molluscs: an analysis using morphological characters. Zool. J. Linnean Soc. 119, 83-265.
69. Reynolds, P.D., 2002. The Scaphopoda. Adv. Mar. Biol. 42, 139-204.
70. Ribes, E., Giménez-Bonafe, P., Zamora, M.J., Gonzalez, A., Kasinsky, H., Chiva, M., 2002. Evolution of octopod sperm II: Comparison of acrosomal morphogenesis in Eledone and Octopus. Mol. Reprod. Dev. 62, 363-367.
71. Roper, C.F.E., 1969. Systematics and zoogeography of the worldwide bathypelagic squid Bathyteuthis (Cephalopoda: Oegopsida). Bull. US Natl. Mus. 291, 1-210.
72. Roper, C.F.E. Sweeney, M.J., Nauen, C.A., 1984. FAO Species Catalog: Cephalopods of the World. An Annotated and Illustrated Catalog of Species of Interest to Fisheries. FAO Fisheries Synopsis, Rome.
73. Roper, C.F.E., Young, R.E., Voss, G.L., 1969. An illustrated key to the families of the order Teuthoidea (Cephalopoda). Smithsonian Contrib. Zool. 13, 1-32.
74. Salvini-Plawen, L., Steiner, 1996. Synapomorphies and Plesiomorphies in higher classification of Mollusca. In: Taylor J.T. (Ed.), Origin and Evolutionary Radiation of the Mollusca. Oxford University Press, Oxford, pp. 29-51.
75. Shimek, R.L., Steiner, 1997. Scaphopoda. In: Harrison, F.W., Kohn, A.J. (Eds.), Microscopic Anatomy of Invertebrates, Vol. 6B: Mollusca 11. John Wiley and Sons, New York, pp. 13-54.
76. Smith, S.W., Overbeek, R., Woese, C.R., Gilbert, W., Gillivet, P.M., 1994. The genetic data environment: an expandable GUI for multiple sequence analysis. Comput. Appl. Biosci. 10, 671-675.
77. Toll, R.B., 1982. The comparative morphology of the gladius in the order Teuthoidea (Mollusca: Cephalopoda) in relation to systematics and phylogeny. PhD Dissertation, University of Miami, FL.
78. Toll, R.B., 1998. The gladius in teuthoid systematics. In: International Workshop on the Systematics and Biogeography of Cephalopods. Smithsonian Institution Press, Washington, DC, pp. 55-68.
79. Voight, J.R., 1997. Cladistic analysis of the octopods based on anatomical characters. J. Molluscan Studies, 63, 311-325.
80. Waller, T.R., 1998. Origin of the molluscan class Bivalvia and a phylogeny of major groups. In: Johnston, P.A., Haggart, J.W. (Eds.), Origin of the Molluscan Class Bivalvia and a Phylogeny of Major Groups. University of Calgary Press, Calgary, pp. 1-45.
81. Wanninger, A., Haszprunar, G., 2002. Chiton myogenesis: perspectives for the development and evolution of larval and adult muscle systems in molluscs. J. Morph, 251, 103-113.
82. Wheeler, W., 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst Biol. 44, 321-331.
83. Wheeler, W., 1996. Optimization alignment: The end of multiple sequence alignment in phylogenetics? Cladistics, 12, 1-9.
84. Wheeler, W.C., Gladstein, D. DeLaet, J., 2002. POY, Version 3.0. Program and documentation available at ftp://ftp.amnh.org/pub/molecular. American Museum of Natural History.
85. Wheeler, W.C., Giribet, G., Edgecombe, G.D., 2004. Arthropod systematics: The comparative study of genomic, anatomical, and paleontological information. In: Cracraft, J., Donoghue, MJ. (Eds.), Assembling the Tree of Life. Oxford University Press, New York, pp. 281-295.
86. Wheeler, W.C., Hayashi, C.Y., 1998. The phylogeny of extant chelicerate orders. Cladistics, 14, 173-192.
87. Whiting, M.F., Carpenter, J.M., Wheeler, Q.D., Wheeler, W.C., 1997. The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Syst Biol. 46, 1-68.
88. Young, R.E., 1964. The anatomy of the vampire squid. MSc Thesis. University of Southern California, Los Angeles, CA.
89. Young, R.E., 1977. Ventral bioluminescent countershading in mid-water cephalopods. Symp. Zool. Soc. Lond. 38, 168-190.
90. Young, R.E., Harman, R.F., 1998. Phylogeny of the 'Enoploteuthid' Families. In: International Workshop on Systematics and Biogeography of Cephalopods. Smithsonian Institution Press, Washington, DC, pp. 257-271.
91. Young, R.E., Vecchione, M., Donovan, D.T., 1998. The evolution of coleoid cephalopods and their present biodiversity and ecology. In: Payne, A.I.L, Lipinski, M.R., Clarke, M.R., Roeleveld, M.A.C. (Eds.), Cephalopod Biodiversity, Ecology and Evolution. National Book Printers, Cape Town, pp. 393-420.
92. Young, R.E., Vecchione, M., 1996. Analysis of morphology to determine primary sister-taxon relationships within coleoid cephalopods. Am. Malacal. Bull. 12, 91-112.