Association mapping of grain quality and flowering time in elite japonica rice germplasm

Journal of Cereal Science

Volumn 51, Issue 3, 2010, Pages 337-343

  Ordonez Jr , Samuel A ^a   Silva, James ^a   Oard, James H ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Amylose content; Flowering time; Grain quality; Head rice

Indexed keywords

JAPONICA;

EID: 77953150255     PISSN: 07335210     EISSN: 10959963     Source Type: Journal    
DOI: 10.1016/j.jcs.2010.02.001     Document Type: Article

References (27)

1. Aluko G., Martinez C., Tohme J., Castano C., Bergman C., and Oard J.H. QTL mapping of grain quality traits from the interspecific cross Oryza sativa × O. glaberrima. Theoretical and Applied Genetics 109 (2004) 630-639
2. Breseghello F., and Sorrells M.E. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172 (2006) 1165-1177
3. Chen M.H., Bergman C., Pinson S., and Fjellstrom R. Waxy gene haplotypes: associations with apparent amylose content and the effect by the environment in an international rice germplasm collection. Journal of Cereal Science 47 (2008) 536-545
4. Fan C.C., Yu X.Q., Xing Y.Z., Xu C.G., Luo L.J., and Zhang Q. The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled-haploid population. Theoretical and Applied Genetics 110 (2005) 1445-1452
5. Freund R.J., and Littel R.C. SAS System for Regression, second ed (1991), SAS Institute Inc., Cary, N.C
6. Garris A.J., Tai T.H., Coburn J., Kresovich S., and McCouch S. Genetic structure and diversity in Oryza sativa L. Genetics 169 (2005) 1631-16378
7. Hao W., Zhu M.-Z., Gao J.-P., Dun S.-Y., and Lin H.-X. Identification of quantitative trait loci for rice quality in a population of chromosome segment substitution lines. Journal of Integrative Plant Biology 51 (2009) 500-512
8. Juliano B.O., and Villareal C.P. Grain Quality Evaluation of World Rices (1993), International Rice Research Institute, Manila
9. Kepiro J.L., McClung A.M., Chen M.H., Yeater K.M., and Fjellstrom R.G. Mapping QTLs for milling yield and grain characteristics in a tropical japonica long grain cross. Journal of Cereal Science 48 (2008) 477-485
10. Kojima S., Takahashi Y., Kobayashi Y., Monna L., Sasaki T., Araki T., and Yano M. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiology 43 (2002) 1096-1105
11. Li Z.K., Yu S.B., Lafitte H.R., Huang N., Courtois B., Hittalmani S., Vijayakumar C.H., Liu G.F., Wang G.C., Shashidhar H.E., Zhuang J.Y., Zheng K.L., Singh V.P., Sidhu J.S., Srivantaneeyakul S., and Khush G.S. QTL × environment interactions in rice. I. heading date and plant height. Theoretical and Applied Genetics 108 (2003) 141-153
12. Lou J., Chen L., Yue G.Y., Lou Q., Mei H., and Xiong L. QTL mapping of grain quality traits in rice. Journal of Cereal Science 50 (2009) 145-151
13. Luan W., Chen H., Fu Y., Si H., Peng W., Song S., Liu W., Hu G., Sun Z., Xie D., and Sun C. The effect of the crosstalk between photoperiod and temperature on the heading-date in rice. PLos ONE 4 (2009) e5891 10.1371/journal.pone0005891
14. Myles S., Peiffer J., Brown P., Ersoz E., Zhang Z., Costich D.E., and Buckler E.S. Association mapping: critical considerations shift from genotyping to experimental design. The Plant Cell (2009). http://www.plantcell.org/cgi/rapidpdf/tpc.109.068437v1
15. Septiningsih E.M., Trijatmiko K.R., Moeljopawiro S., and McCouch S.R. Identification of quantitative trait loci for grain quality in and advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theoretical and Applied Genetics 107 (2003) 1433-1441
16. Tabien R.E., Samonte S.O.P.B., and Tiongco E.R. Relationship of milled grain percentages and flowering-related traits in rice. Journal of Cereal Science 49 (2009) 122-127
17. Tamaki S., Matsuo S., Wong H.L., Yokoi S., and Shimamoto K. Hd3a protein is a mobile flowering signal in rice. Science 316 (2007) 1033-1036
18. Tan Y.F., Li J.X., Yu S.B., Xing Y.Z., Xu C.G., and Zhang Q. The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63. Theoretical and Applied Genetics 99 (1999) 642-648
19. Tan Y.F., Sun M., Xing Y.Z., Hua J.P., Sun X.L., Zhang Q.F., and Corke H. Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid. Theoretical and Applied Genetics 103 (2001) 1037-1045
20. Tukey J.W. One degree of freedom for non-addditivity. Biometrics 5 (1949) 232-242
21. Unnevehr L.J., Duff B., and Juliano B.O. Consumer Demand for Rice Grain Quality (1992), International Rice Research Institute, Manila, and International Development Research Center, Ottawa
22. Wan X.Y., Wan J.M., Su C.C., Wang C.M., Shen W.B., Li J.M., Wang H.L., Jiang L., Liu S.J., Chen L.M., Yasui H., and Yoshimura A. Theoretical and Applied Genetics 110 (2004) 71-79
23. Wilson L.M., Whitt S.R., Ibanez A.M., Rocheford T.R., Goodman M.M., and Buckler E.S.I.V. Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell 16 (2004) 2719-2733
24. Yano M., Katayose Y., Ashikari M., Yamanouchi U., Monna L., Fuse T., Baba T., Yamamoto K., Umehara Y., Nagamura Y., and Sasaki T. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12 (2000) 2473-2484
25. Zhang N., Xu Y., Akash M., McCouch S., and Oard J.H. Identification of candidate markers associated with agronomic traits in rice using discriminant analysis. Theoretical and Applied Genetics 110 (2005) 721-729
26. Zheng T.Q., Xu J.L., Li Z.K., Zhai H.Q., and Wan J.M. Genomic regions associated with milling quality and grain shape identified in a set of random introgression lines of rice (Oryza sativa L.). Plant Breeding 126 (2007) 158-163
27. Zhou P.H., Tan Y.F., He Y.Q., Xu C.G., and Zhang Q.F. Simultaneous improvement of four quality traits of Zhenshan 97, an elite parent of hybrid rice, by molecular marker-assisted selection. Theoretical and Applied Genetics 106 (2003) 326-331