-
2
-
-
0000549919
-
Mitochondrial origins
-
Yang D., Oyaizu Y., Oyaizu H., Olsen G.J., Woese C.R. Mitochondrial origins. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:4443-4447.
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 4443-4447
-
-
Yang, D.1
Oyaizu, Y.2
Oyaizu, H.3
Olsen, G.J.4
Woese, C.R.5
-
3
-
-
0000527581
-
Evolution of Microbial Life
-
Cambridge Univ Press, Cambridge, D.M. Roberts, P. Sharp, G. Alderson, M. Collins (Eds.)
-
Gray M.W., Spencer D.F. Evolution of Microbial Life. Society for General Microbiology Symposia 1996, 107-126. Cambridge Univ Press, Cambridge. D.M. Roberts, P. Sharp, G. Alderson, M. Collins (Eds.).
-
(1996)
Society for General Microbiology Symposia
, pp. 107-126
-
-
Gray, M.W.1
Spencer, D.F.2
-
4
-
-
0041401720
-
The dual origin of the yeast mitochondrial proteome
-
Karlberg O., Canback B., Kurland C.G., Andersson S.G. The dual origin of the yeast mitochondrial proteome. Yeast 2000, 17:170-187.
-
(2000)
Yeast
, vol.17
, pp. 170-187
-
-
Karlberg, O.1
Canback, B.2
Kurland, C.G.3
Andersson, S.G.4
-
5
-
-
0034443285
-
Origin and evolution of the mitochondrial proteome
-
Kurland C.G., Andersson S.G. Origin and evolution of the mitochondrial proteome. Microbiol Mol Biol Rev 2000, 64:786-820.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 786-820
-
-
Kurland, C.G.1
Andersson, S.G.2
-
6
-
-
0037007138
-
From bacteria to mitochondria: aconitase yields surprises
-
Walden W.E. From bacteria to mitochondria: aconitase yields surprises. Proc. Natl. Acad. Sci. U S A 2002, 99:4138-4140.
-
(2002)
Proc. Natl. Acad. Sci. U S A
, vol.99
, pp. 4138-4140
-
-
Walden, W.E.1
-
7
-
-
0036190131
-
Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer
-
Schnarrenberger C., Martin W. Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer. Eur. J. Biochem. 2002, 269:868-883.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 868-883
-
-
Schnarrenberger, C.1
Martin, W.2
-
8
-
-
0034913239
-
The origin and early evolution of mitochondria
-
REVIEWS1018
-
Gray M.W., Burger G., Lang B.F. The origin and early evolution of mitochondria. Genome Biol. 2001, 2. REVIEWS1018.
-
(2001)
Genome Biol.
, vol.2
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
9
-
-
1842429937
-
Ancient invasions: from endosymbionts to organelles
-
Dyall S.D., Brown M.T., Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 2004, 304:253-257.
-
(2004)
Science
, vol.304
, pp. 253-257
-
-
Dyall, S.D.1
Brown, M.T.2
Johnson, P.J.3
-
10
-
-
0042266921
-
Reconstruction of the proto-mitochondrial metabolism
-
Gabaldon T., Huynen M.A. Reconstruction of the proto-mitochondrial metabolism. Science 2003, 301:609.
-
(2003)
Science
, vol.301
, pp. 609
-
-
Gabaldon, T.1
Huynen, M.A.2
-
12
-
-
33746837207
-
Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria
-
Wang Z., et al. Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria. BMC Genomics 2006, 7:100.
-
(2006)
BMC Genomics
, vol.7
, pp. 100
-
-
Wang, Z.1
-
13
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H., Tombor B., Albert R., Oltvai Z.N., Barabasi A.L. The large-scale organization of metabolic networks. Nature 2000, 407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
14
-
-
0034876239
-
Comparable system-level organization of Archaea and Eukaryotes
-
Podani J., et al. Comparable system-level organization of Archaea and Eukaryotes. Nat. Genet. 2001, 29:54-56.
-
(2001)
Nat. Genet.
, vol.29
, pp. 54-56
-
-
Podani, J.1
-
15
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma H., Zeng A.P. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 2003, 19:270-277.
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.1
Zeng, A.P.2
-
16
-
-
1642465370
-
Phylogenetic comparison of metabolic capacities of organisms at genome level
-
Ma H.W., Zeng A.P. Phylogenetic comparison of metabolic capacities of organisms at genome level. Mol. Phylogenet. Evol. 2004, 31:204-213.
-
(2004)
Mol. Phylogenet. Evol.
, vol.31
, pp. 204-213
-
-
Ma, H.W.1
Zeng, A.P.2
-
17
-
-
34547888003
-
A genome-scale, constraint-based approach to systems biology of human metabolism
-
Mo M.L., Jamshidi N., Palsson B.O. A genome-scale, constraint-based approach to systems biology of human metabolism. Mol. Biosyst. 2007, 3:598-603.
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 598-603
-
-
Mo, M.L.1
Jamshidi, N.2
Palsson, B.O.3
-
18
-
-
4544288672
-
Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
-
Vo T.D., Greenberg H.J., Palsson B.O. Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. J. Biol. Chem. 2004, 279:39532-39540.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 39532-39540
-
-
Vo, T.D.1
Greenberg, H.J.2
Palsson, B.O.3
-
19
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
Reed J.L., Vo T.D., Schilling C.H., Palsson B.O. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Genome Biol. 2003, 4:R54.
-
(2003)
Genome Biol.
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
20
-
-
23644452487
-
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants
-
Thiele I., Vo T.D., Price N.D., Palsson B.O. Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants. J. Bacteriol. 2005, 187:5818-5830.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 5818-5830
-
-
Thiele, I.1
Vo, T.D.2
Price, N.D.3
Palsson, B.O.4
-
21
-
-
33845250184
-
Isotopomer analysis of myocardial substrate metabolism: a systems biology approach
-
Vo T.D., Palsson B.O. Isotopomer analysis of myocardial substrate metabolism: a systems biology approach. Biotechnol. Bioeng 2006, 95:972-983.
-
(2006)
Biotechnol. Bioeng
, vol.95
, pp. 972-983
-
-
Vo, T.D.1
Palsson, B.O.2
-
22
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte N.C., et al. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl. Acad. Sci. U S A 2007, 104:1777-1782.
-
(2007)
Proc. Natl. Acad. Sci. U S A
, vol.104
, pp. 1777-1782
-
-
Duarte, N.C.1
-
23
-
-
33846390427
-
Building the power house: recent advances in mitochondrial studies through proteomics and systems biology
-
Vo T.D., Palsson B.O. Building the power house: recent advances in mitochondrial studies through proteomics and systems biology. Am. J. Physiol. Cell Physiol. 2007, 292:C164-C177.
-
(2007)
Am. J. Physiol. Cell Physiol.
, vol.292
-
-
Vo, T.D.1
Palsson, B.O.2
-
24
-
-
0036499057
-
SHOT: a web server for the construction of genome phylogenies
-
Korbel J.O., Snel B., Huynen M.A., Bork P. SHOT: a web server for the construction of genome phylogenies. Trends Genet. 2002, 18:158-162.
-
(2002)
Trends Genet.
, vol.18
, pp. 158-162
-
-
Korbel, J.O.1
Snel, B.2
Huynen, M.A.3
Bork, P.4
-
25
-
-
0037471715
-
On the origin of mitochondria: a genomics perspective
-
discussion 177-9
-
Andersson S.G., Karlberg O., Canback B., Kurland C.G. On the origin of mitochondria: a genomics perspective. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 2003, 358:165-177. discussion 177-9.
-
(2003)
Philos. Trans. R. Soc. Lond. B. Biol. Sci.
, vol.358
, pp. 165-177
-
-
Andersson, S.G.1
Karlberg, O.2
Canback, B.3
Kurland, C.G.4
-
26
-
-
0032512051
-
The genome sequence of Rickettsia prowazekii and the origin of mitochondria
-
Andersson S.G., et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 1998, 396:133-140.
-
(1998)
Nature
, vol.396
, pp. 133-140
-
-
Andersson, S.G.1
-
27
-
-
33645732240
-
Modeling cellular machinery through biological network comparison
-
Sharan R., Ideker T. Modeling cellular machinery through biological network comparison. Nat. Biotechnol. 2006, 24:427-433.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 427-433
-
-
Sharan, R.1
Ideker, T.2
-
28
-
-
33745588868
-
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
-
Zhang Y., et al. Phylophenetic properties of metabolic pathway topologies as revealed by global analysis. BMC Bioinf. 2006, 7:252.
-
(2006)
BMC Bioinf.
, vol.7
, pp. 252
-
-
Zhang, Y.1
-
29
-
-
13244265564
-
Structural comparison of metabolic networks in selected single cell organisms
-
Zhu D., Qin Z.S. Structural comparison of metabolic networks in selected single cell organisms. BMC Bioinf. 2005, 6:8.
-
(2005)
BMC Bioinf.
, vol.6
, pp. 8
-
-
Zhu, D.1
Qin, Z.S.2
-
30
-
-
1542287343
-
Superfamilies of evolved and designed networks
-
Milo R., et al. Superfamilies of evolved and designed networks. Science 2004, 303:1538-1542.
-
(2004)
Science
, vol.303
, pp. 1538-1542
-
-
Milo, R.1
-
32
-
-
10344264978
-
Metabolic interdependence of obligate intracellular bacteria and their insect hosts
-
Zientz E., Dandekar T., Gross R. Metabolic interdependence of obligate intracellular bacteria and their insect hosts. Microbiol. Mol. Biol. Rev. 2004, 68:745-770.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 745-770
-
-
Zientz, E.1
Dandekar, T.2
Gross, R.3
-
33
-
-
0032738446
-
Multifunctional enzymes and evolution of biosynthetic pathways: retro-evolution by jumps
-
Roy S. Multifunctional enzymes and evolution of biosynthetic pathways: retro-evolution by jumps. Proteins 1999, 37:303-309.
-
(1999)
Proteins
, vol.37
, pp. 303-309
-
-
Roy, S.1
-
34
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr S.S., Milo R., Mangan S., Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 2002, 31:64-68.
-
(2002)
Nat. Genet.
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
35
-
-
0037174670
-
Network motifs: simple building blocks of complex networks
-
Milo R., et al. Network motifs: simple building blocks of complex networks. Science 2002, 298:824-827.
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
-
36
-
-
34249079154
-
Network motifs: theory and experimental approaches
-
Alon U. Network motifs: theory and experimental approaches. Nat. Rev. Genet. 2007, 8:450-461.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
37
-
-
11144248635
-
The topological relationship between the large-scale attributes and local interaction patterns of complex networks
-
Vazquez A., et al. The topological relationship between the large-scale attributes and local interaction patterns of complex networks. Proc. Natl. Acad. Sci. U S A 2004, 101:17940-17945.
-
(2004)
Proc. Natl. Acad. Sci. U S A
, vol.101
, pp. 17940-17945
-
-
Vazquez, A.1
-
38
-
-
0037012880
-
Specificity and stability in topology of protein networks
-
Maslov S., Sneppen K. Specificity and stability in topology of protein networks. Science 2002, 296:910-913.
-
(2002)
Science
, vol.296
, pp. 910-913
-
-
Maslov, S.1
Sneppen, K.2
-
39
-
-
33750177351
-
Centrality in social networks: Conceptual clarification
-
Freeman L. Centrality in social networks: Conceptual clarification. Social Networks 1979, 1:215-239.
-
(1979)
Social Networks
, vol.1
, pp. 215-239
-
-
Freeman, L.1
|