-
1
-
-
0032516147
-
Gene transfer to the nucleus and the evolution of chloroplasts
-
Martin W, Stoebe B, Goremykin V, Hansmann S, Hasegawa M, Kowallik KV: Gene transfer to the nucleus and the evolution of chloroplasts. Nature 1998, 393:162-165.
-
(1998)
Nature
, vol.393
, pp. 162-165
-
-
Martin, W.1
Stoebe, B.2
Goremykin, V.3
Hansmann, S.4
Hasegawa, M.5
Kowallik, K.V.6
-
2
-
-
1242352070
-
Origin phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes
-
Chu KH, Qi J, Yu ZG, Anh V: Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Mol Biol Evol 2004, 21:200-206.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 200-206
-
-
Chu, K.H.1
Qi, J.2
Yu, Z.G.3
Anh, V.4
-
3
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Penny D: Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 2002, 99:12246-12251.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Penny, D.4
-
4
-
-
0037213560
-
Chloroplast research in the genomic age
-
Leister D: Chloroplast research in the genomic age. Trends Genet 2003, 19:47-56.
-
(2003)
Trends Genet
, vol.19
, pp. 47-56
-
-
Leister, D.1
-
5
-
-
0032411339
-
Evolution and mechanism of translation in chloroplasts
-
Sugiura M, Hirose T, Sugita M: Evolution and mechanism of translation in chloroplasts. Annu Rev Genet 1998, 32:437-459.
-
(1998)
Annu Rev Genet
, vol.32
, pp. 437-459
-
-
Sugiura, M.1
Hirose, T.2
Sugita, M.3
-
6
-
-
0037264370
-
Genomics and chloroplast evolution: What did cyanobacteria do for plants?
-
Raven JA, Allen JF: Genomics and chloroplast evolution: what did cyanobacteria do for plants? Genome Biol 2003, 209:1-5.
-
(2003)
Genome Biol
, vol.209
, pp. 1-5
-
-
Raven, J.A.1
Allen, J.F.2
-
7
-
-
3042809852
-
Thinking about the evolution of photosynthesis
-
Olson JM, Blankenship RE: Thinking about the evolution of photosynthesis. Photosynth Res 2004, 80:373-386.
-
(2004)
Photosynth Res
, vol.80
, pp. 373-386
-
-
Olson, J.M.1
Blankenship, R.E.2
-
8
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H, Tombor B, Albertl R, Oltvai ZN, Babarasi AL: The large-scale organization of metabolic networks. Nature 2000, 407:651-654.
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albertl, R.3
Oltvai, Z.N.4
Babarasi, A.L.5
-
9
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma HW, Zeng AP: Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 2003, 19:270-277.
-
(2003)
Bioinformatics
, vol.19
, pp. 270-277
-
-
Ma, H.W.1
Zeng, A.P.2
-
10
-
-
0033518234
-
From molecular to modular cell biology
-
Hartwell LH, Hopfield JJ, Leibler S, Murray AW: From molecular to modular cell biology. Nature 1999, 402:47-52.
-
(1999)
Nature
, vol.402
, pp. 47-52
-
-
Hartwell, L.H.1
Hopfield, J.J.2
Leibler, S.3
Murray, A.W.4
-
11
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL: Hierarchical organization of modularity in metabolic networks. Science 2002, 297:1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabási, A.L.5
-
12
-
-
0037417817
-
Modular organization of cellular networks
-
Rives AW, Galitski T: Modular organization of cellular networks. Proc Natl Acad Sci USA 2003, 100:1128-1133.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1128-1133
-
-
Rives, A.W.1
Galitski, T.2
-
13
-
-
8544223537
-
Hierarchical thinking in network biology: The unbiased modularization of biochemical networks
-
Papin JA, Reed JL, Palsson BO: Hierarchical thinking in network biology: the unbiased modularization of biochemical networks. Trends Biochem Sci 2004, 29:641-647.
-
(2004)
Trends Biochem Sci
, vol.29
, pp. 641-647
-
-
Papin, J.A.1
Reed, J.L.2
Palsson, B.O.3
-
14
-
-
0002226683
-
Pajek-program for large network analysis
-
Batagelj V, Mrvar A: Pajek-program for large network analysis. Connections 1998, 21:47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
15
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster S, Fell DA, Dandekar T: A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nature 2000, 18:326-332.
-
(2000)
Nature
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
16
-
-
1242274402
-
Flux coupling analysis of genome-scale metabolic network reconstructions
-
Burgard AP, Nikolaev EV, Schilling CH, Maranas CD: Flux coupling analysis of genome-scale metabolic network reconstructions. Genome Res 2004, 14:301-312.
-
(2004)
Genome Res
, vol.14
, pp. 301-312
-
-
Burgard, A.P.1
Nikolaev, E.V.2
Schilling, C.H.3
Maranas, C.D.4
-
17
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
Price ND, Reed JL, Palsson B: Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat Rev Microbiol 2004, 2:886-897.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.3
-
18
-
-
0005924596
-
Graph clustering by flow simulation
-
In PhD thesis University of Utrecht, Center of mathematics and computer science
-
van Dongen S: Graph clustering by flow simulation. In PhD thesis University of Utrecht, Center of mathematics and computer science; 2000.
-
(2000)
-
-
van Dongen, S.1
-
20
-
-
33746800948
-
Clustering with spectral methods
-
In Master's thesis University at Kon-stanz
-
Gaertler M: Clustering with spectral methods. In Master's thesis University at Kon-stanz; 2002.
-
(2002)
-
-
Gaertler, M.1
-
21
-
-
14644396645
-
Functional cartography of complex metabolic networks
-
Guimerà R, Amaral LAN: Functional cartography of complex metabolic networks. Nature 2005, 433:895-900.
-
(2005)
Nature
, vol.433
, pp. 895-900
-
-
Guimerà, R.1
Amaral, L.A.N.2
-
22
-
-
14644420038
-
Cartography of complex networks: Modules and universal roles
-
Guimerà R, Amaral LAN: Cartography of complex networks: modules and universal roles. J Stat Mech Theor Exp 2005, PO2001:1-13.
-
(2005)
J Stat Mech Theor Exp
, vol.PO2001
, pp. 1-13
-
-
Guimerà, R.1
Amaral, L.A.N.2
-
23
-
-
0035083554
-
Plants steroid hormones, brassinosteroids: Current highlights of molecular aspects on their synthesis/metabolism, transport, perception and response
-
Bishop GJ, Yokota T: Plants steroid hormones, brassinosteroids: current highlights of molecular aspects on their synthesis/metabolism, transport, perception and response. Plant Cell Physiol 2001, 42:114-120.
-
(2001)
Plant Cell Physiol
, vol.42
, pp. 114-120
-
-
Bishop, G.J.1
Yokota, T.2
-
24
-
-
20444374151
-
Eto Brute? Role of ACS turnover in regulating ethylene biosynthesis
-
Chae HS, Kieber JJ: Eto Brute? Role of ACS turnover in regulating ethylene biosynthesis. Trends In Plant Science 2005, 10:291-296.
-
(2005)
Trends In Plant Science
, vol.10
, pp. 291-296
-
-
Chae, H.S.1
Kieber, J.J.2
-
25
-
-
26444507268
-
Regulation of root growth by plant hormones-roles for auxin and gibberellin
-
Tanimoto E: Regulation of root growth by plant hormones-roles for auxin and gibberellin. Critical Reviews In Plant Sciences 2005, 24:249-265.
-
(2005)
Critical Reviews In Plant Sciences
, vol.24
, pp. 249-265
-
-
Tanimoto, E.1
-
26
-
-
0037001963
-
Complex evolution of photosynthesis
-
Xiong J, Bauer CE: Complex evolution of photosynthesis. Annu Rev Plant Biol 2002, 53:503-521.
-
(2002)
Annu Rev Plant Biol
, vol.53
, pp. 503-521
-
-
Xiong, J.1
Bauer, C.E.2
-
27
-
-
2442635417
-
Peroxisome proliferators and peroxisome proliferation-activated receptor: Biotic and xenobiotic sensing
-
Reddy JK: Peroxisome proliferators and peroxisome proliferation-activated receptor: biotic and xenobiotic sensing. American Journal of Pathology 2004, 164:2305-2321.
-
(2004)
American Journal of Pathology
, vol.164
, pp. 2305-2321
-
-
Reddy, J.K.1
-
28
-
-
0033513358
-
The water-water cycle in chloropasts: Scavenging of active oxygens and dissipation of excess photons
-
Asada K: The water-water cycle in chloropasts: scavenging of active oxygens and dissipation of excess photons. Annual Review of Plant Phyiology and Plant Molecular Biology 1999, 50:601-639.
-
(1999)
Annual Review of Plant Phyiology and Plant Molecular Biology
, vol.50
, pp. 601-639
-
-
Asada, K.1
-
29
-
-
0034682457
-
Interpreting the universal phylogenetic tree
-
Woese CR: Interpreting the universal phylogenetic tree. Proc Natl Acad Sci USA 2000, 15:8392-8396.
-
(2000)
Proc Natl Acad Sci USA
, vol.15
, pp. 8392-8396
-
-
Woese, C.R.1
-
30
-
-
0037173066
-
On the evolution of cells
-
Woese CR: On the evolution of cells. Proc Natl Acad Sci USA 2002, 99:8742-8747.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8742-8747
-
-
Woese, C.R.1
-
31
-
-
28444454056
-
Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with photosystem II
-
Zhu XG, Govindjee NR, Baker NR, deSturler E, Ort DR, Long SP: Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with photosystem II. Planta 2005, 223:114-133.
-
(2005)
Planta
, vol.223
, pp. 114-133
-
-
Zhu, X.G.1
Govindjee, N.R.2
Baker, N.R.3
deSturler, E.4
Ort, D.R.5
Long, S.P.6
-
32
-
-
28444474099
-
Transfer and trapping of excitation in plant photosystems
-
In Edited by: Papageorgiou CC, Govindjee. Springer, Heidelberg, Germany
-
van Grondelle R, Gobets B: Transfer and trapping of excitation in plant photosystems. In Chlorophyll a fluorescence a signature of photosynthesis Edited by: Papageorgiou CC, Govindjee. Springer, Heidelberg, Germany; 2005:107-132.
-
(2005)
Chlorophyll a Fluorescence a Signature of Photosynthesis
, pp. 107-132
-
-
van Grondelle, R.1
Gobets, B.2
-
33
-
-
1242344163
-
Would transformation of C3 crop plants with foreign Rubisco increases productivity? A computational analysis extrapolating form kinetic properties to canopy photosynthesis
-
Zhu XG, Portis AR Jr, Long SP: Would transformation of C3 crop plants with foreign Rubisco increases productivity? A computational analysis extrapolating form kinetic properties to canopy photosynthesis. Plant Cell and Environment 2004, 27:155-165.
-
(2004)
Plant Cell and Environment
, vol.27
, pp. 155-165
-
-
Zhu, X.G.1
Portis Jr., A.R.2
Long, S.P.3
-
35
-
-
0037944233
-
Pathways database system: An integrated system for biological pathways
-
Krishnamurth L, Nadeau J, Ozsoyoglu G, Ozsoyoglu M, Schaeffer G, Tasan M, Xu W: Pathways database system: an integrated system for biological pathways. Bioinformatics 2003, 19:930-937.
-
(2003)
Bioinformatics
, vol.19
, pp. 930-937
-
-
Krishnamurth, L.1
Nadeau, J.2
Ozsoyoglu, G.3
Ozsoyoglu, M.4
Schaeffer, G.5
Tasan, M.6
Xu, W.7
-
36
-
-
0037316342
-
FluxAnalyzer: Exploring structure, pathways, and fluxes in balanced metabolic networks by interactive flux maps
-
Klamt S, Stelling J, Ginkel M, Gilles ED: FluxAnalyzer: Exploring structure, pathways, and fluxes in balanced metabolic networks by interactive flux maps. Bioinformatics 2003, 19:261-269.
-
(2003)
Bioinformatics
, vol.19
, pp. 261-269
-
-
Klamt, S.1
Stelling, J.2
Ginkel, M.3
Gilles, E.D.4
-
37
-
-
0142214892
-
Experiments on graph clustering algorithms
-
Brandes U, Gaertler M, Wagner D: Experiments on graph clustering algorithms. ESA LNCS 2003, 2832:568-579.
-
(2003)
ESA LNCS
, vol.2832
, pp. 568-579
-
-
Brandes, U.1
Gaertler, M.2
Wagner, D.3
-
38
-
-
2142794241
-
Performance criteria for graph clustering and markov cluster experiments
-
In Report INS-R0012 National Research Institute for Mathematics and Computer Science
-
van Dongen S: Performance criteria for graph clustering and markov cluster experiments. In Report INS-R0012 National Research Institute for Mathematics and Computer Science; 2000.
-
(2000)
-
-
van Dongen, S.1
-
39
-
-
4644359828
-
Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns
-
Glazko GV, Mushegian AR: Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns. Genome Biol 2004, 5:1-13.
-
(2004)
Genome Biol
, vol.5
, pp. 1-13
-
-
Glazko, G.V.1
Mushegian, A.R.2
|