Regulation of single-stranded DNA binding by the C termini of Escherichia coli single-stranded DNA-binding (SSB) protein

Journal of Biological Chemistry

Volumn 285, Issue 22, 2010, Pages 17246-17252

  Kozlov, Alexander G ^a   Cox, Michael M ^b   Lohman, Timothy M ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACIDIC AMINO ACIDS; C-TERMINAL TAIL; COOPERATIVITY; DNA REPLICATIONS; ENTROPY CHANGES; INHIBITORY EFFECT; OLIGODEOXYNUCLEOTIDES; SALT CONCENTRATION; SINGLE-STRANDED (SS) DNA; SINGLE-STRANDED DNA; SINGLE-STRANDED DNA-BINDING PROTEINS;

AMINO ACIDS; BINDING ENERGY; BIOCHEMISTRY; DNA; ESCHERICHIA COLI; GENES; ORGANIC ACIDS; PROTEINS; SALT REMOVAL;

BINDING SITES;

OLIGODEOXYNUCLEOTIDE; SINGLE STRANDED DNA; SINGLE STRANDED DNA BINDING PROTEIN; SODIUM CHLORIDE;

ARTICLE; BINDING AFFINITY; BINDING KINETICS; BINDING SITE; CARBOXY TERMINAL SEQUENCE; ESCHERICHIA COLI; PRIORITY JOURNAL; REGULATORY MECHANISM;

BINDING SITES; BUFFERS; CALORIMETRY; DNA, SINGLE-STRANDED; DNA-BINDING PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR CONFORMATION; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SALTS; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS;

ESCHERICHIA COLI;

EID: 77952783935     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.118273     Document Type: Article

References (52)

1. Chase, J. W., and Williams, K. R. (1986) Annu. Rev. Biochem. 55, 103-136
2. Meyer, R. R., and Laine, P. S. (1990) Microbiol. Rev. 54, 342-380
3. Wold, M. S. (1997) Annu. Rev. Biochem. 66, 61-92
4. Shereda, R. D., Kozlov, A. G., Lohman, T. M., Cox, M. M., and Keck, J. L. (2008) Crit. Rev. Biochem. Mol. Biol. 43, 289-318
5. Suck, D. (1997) Nat. Struct. Biol. 4, 161-165
6. Dabrowski, S., Olszewski, M., Piatek, R., Brillowska-Dabrowska, A., Konopa, G., and Kur, J. (2002) Microbiology 148, 3307-3315
7. Eggington, J. M., Haruta, N., Wood, E. A., and Cox, M. M. (2004) BMC Microbiol. 4, 2
8. Bernstein, D. A., Eggington, J. M., Killoran, M. P., Misic, A. M., Cox, M. M., and Keck, J. L. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 8575-8580
9. Raghunathan, S., Ricard, C. S., Lohman, T. M., and Waksman, G. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 6652-6657
10. Lohman, T. M., and Bujalowski, W. (1990) in The Biology of Nonspecific DNA-Protein Interactions (Revzin, A., ed) pp. 131-170, CRC Press, Inc., Boca Raton, FL
11. Lohman, T. M., and Ferrari, M. E. (1994) Annu. Rev. Biochem. 63, 527-570
12. Lohman, T. M., and Overman, L. B. (1985) J. Biol. Chem. 260, 3594-3603
13. Bujalowski, W., and Lohman, T. M. (1986) Biochemistry 25, 7799-7802
14. Chrysogelos, S., and Griffith, J. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 5803-5807
15. Griffith, J. D., Harris, L. D., and Register, J., 3rd. (1984) Cold Spring Harb. Symp. Quant. Biol. 49, 553-559
16. Bujalowski, W., Overman, L. B., and Lohman, T. M. (1988) J. Biol. Chem. 263, 4629-4640
17. Roy, R., Kozlov, A. G., Lohman, T. M., and Ha, T. (2007) J. Mol. Biol. 369, 1244-1257
18. Lohman, T. M., Overman, L. B., and Datta, S. (1986) J. Mol. Biol. 187, 603-615
19. Ferrari, M. E., Bujalowski, W., and Lohman, T. M. (1994) J. Mol. Biol. 236, 106-123
20. Raghunathan, S., Kozlov, A. G., Lohman, T. M., and Waksman, G. (2000) Nat. Struct. Biol. 7, 648-652
21. Roy, R., Kozlov, A. G., Lohman, T. M., and Ha, T. (2009) Nature 461, 1092-1097
22. Savvides, S. N., Raghunathan, S., Fütterer, K., Kozlov, A. G., Lohman, T. M., and Waksman, G. (2004) Protein Sci. 13, 1942-1947
23. Sancar, A., Williams, K. R., Chase, J. W., and Rupp, W. D. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 4274-4278
24. Williams, K. R., Spicer, E. K., LoPresti, M. B., Guggenheimer, R. A., and Chase, J. W. (1983) J. Biol. Chem. 258, 3346-3355
25. Moise, H., and Hosoda, J. (1976) Nature 259, 455-458
26. Hosoda, J., and Moise, H. (1978) J. Biol. Chem. 253, 7547-7558
27. He, Z. G., Rezende, L. F., Willcox, S., Griffith, J. D., and Richardson, C. C. (2003) J. Biol. Chem. 278, 29538-29545
28. Lonberg, N., Kowalczykowski, S. C., Paul, L. S., and von Hippel, P. H. (1981) J. Mol. Biol. 145, 123-138
29. Marintcheva, B., Hamdan, S. M., Lee, S. J., and Richardson, C. C. (2006) J. Biol. Chem. 281, 25831-25840
30. Marintcheva, B., Marintchev, A., Wagner, G., and Richardson, C. C. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 1855-1860
31. Curth, U., Genschel, J., Urbanke, C., and Greipel, J. (1996) Nucleic Acids Res. 24, 2706-2711
32. Lohman, T. M., Green, J. M., and Beyer, R. S. (1986) Biochemistry 25, 21-25
33. Bujalowski, W., and Lohman, T. M. (1991) J. Biol. Chem. 266, 1616-1626
34. Hobbs, M. D., Sakai, A., and Cox, M. M. (2007) J. Biol. Chem. 282, 11058-11067
35. Kowalczykowski, S. C., Lonberg, N., Newport, J. W., and von Hippel, P. H. (1981) J. Mol. Biol. 145, 75-104
36. Gray, D. M., Ratliff, R. L., and Vaughan, M. R. (1992) Methods Enzymol. 211, 389-406
37. Kozlov, A. G., and Lohman, T. M. (1999) Biochemistry 38, 7388-7397
38. Ferrari, M. E., and Lohman, T. M. (1994) Biochemistry 33, 12896-12910
39. Lohman, T. M., and Mascotti, D. P. (1992) Methods Enzymol. 212, 424-458
40. Bujalowski, W., and Lohman, T. M. (1989) J. Mol. Biol. 207, 249-268
41. Wiseman, T., Williston, S., Brandts, J. F., and Lin, L. N. (1989) Anal. Biochem. 179, 131-137
42. Lohman, T. M., and Bujalowski, W. (1994) Biochemistry 33, 6167-6176
43. Kozlov, A. G., and Lohman, T. M. (1998) J. Mol. Biol. 278, 999-1014
44. Kozlov, A. G., and Lohman, T. M. (2002) Biochemistry 41, 6032-6044
45. Kuznetsov, S. V., Kozlov, A. G., Lohman, T. M., and Ansari, A. (2006) J. Mol. Biol. 359, 55-65
46. Bujalowski, W., and Lohman, T. M. (1989) J. Mol. Biol. 207, 269-288
47. Dunker, A. K., Silman, I., Uversky, V. N., and Sussman, J. L. (2008) Curr. Opin. Struct. Biol. 18, 756-764
48. Overman, L. B., Bujalowski, W., and Lohman, T. M. (1988) Biochemistry 27, 456-471
49. Overman, L. B., and Lohman, T. M. (1994) J. Mol. Biol. 236, 165-178
50. Lu, D., and Keck, J. L. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 9169-9174
51. Kozlov, A. G., Jezewska, M. J., Bujalowski, W., and Lohman, T. M. (2010) Biochemistry 49, 3555-3566
52. MicroCal, LLC (2004) ITC Data Analysis in Origin: Tutorial Guide, MicroCal, LLC, Northampton, MA