A common substrate recognition mode conserved between katanin p60 and VPS4 governs microtubule severing and membrane skeleton reorganization

Journal of Biological Chemistry

Volumn 285, Issue 22, 2010, Pages 16822-16829

  Iwaya, Naoko ^a,b,c   Kuwahara, Yohta ^b,c,d   Fujiwara, Yoshie ^b,e   Goda, Natsuko ^b,d   Tenno, Takeshi ^b,d   Akiyama, Kohei ^c   Mase, Shogo ^b,d   Tochio, Hidehito ^a   Ikegami, Takahisa ^f   Shirakawa, Masahiro ^a   Hiroaki, Hidekazu ^b,c,d,e  

^a KYOTO UNIVERSITY   (Japan)

^b KOBE UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^c YOKOHAMA CITY UNIVERSITY   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^e KOBE UNIVERSITY   (Japan)

^f OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ATPASES; BINDING MODES; CELLULAR EVENTS; CYTOSKELETAL; HELIX BUNDLE; HOMOLOGOUS PROTEINS; MICROTUBULES; MOLECULAR ARCHITECTURE; POSITIVELY CHARGED SURFACES; SEQUENCE SIMILARITY; SINGLE DOMAINS; SOLUTION STRUCTURES; SUBSTRATE RECOGNITION;

BINDING ENERGY; COMPLEXATION;

SEMICONDUCTOR DOPING;

ADENOSINE TRIPHOSPHATASE; PROTEIN P60; PROTEIN VPS4; TUBULIN; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; CYTOSKELETON; ENDOSOME; ENZYME ACTIVITY; MEMBRANE STRUCTURE; MICROTUBULE; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION; SEQUENCE HOMOLOGY;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; ANIMALS; CELL MEMBRANE; ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT; ENDOSOMES; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MICE; MICROTUBULES; MOLECULAR SEQUENCE DATA; MUTATION; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 77952774308     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.108365     Document Type: Article

References (63)

1. Desai, A., and Mitchison, T. J. (1997) Annu. Rev. Cell Dev. Biol. 13, 83-117
2. Wittmann, T., Hyman, A., and Desai, A. (2001) Nat. Cell Biol. 3, E28-E34
3. Zhang, D., Rogers, G. C., Buster, D. W., and Sharp, D. J. (2007) J. Cell Biol. 177, 231-242
4. Hazan, J., Fonknechten, N., Mavel, D., Paternotte, C., Samson, D., Artiguenave, F., Davoine, C. S., Cruaud, C., Dürr, A., Wincker, P., Brottier, P., Cattolico, L., Barbe, V., Burgunder, J. M., Prud'homme, J. F., Brice, A., Fontaine, B., Heilig, B., and Weissenbach, J. (1999) Nat. Genet. 23, 296-303
5. Errico, A., Ballabio, A., and Rugarli, E. I. (2002) Hum. Mol. Genet. 11, 153-163
6. Cox, G. A., Mahaffey, C. L., Nystuen, A., Letts, V. A., and Frankel, W. N. (2000) Nat. Genet. 26, 198-202
7. Frickey, T., and Lupas, A. N. (2004) J. Struct. Biol. 146, 2-10
8. McNally, F. J., and Vale, R. D. (1993) Cell 75, 419-429
9. Hartman, J. J., Mahr, J., McNally, K., Okawa, K., Iwamatsu, A., Thomas, S., Cheesman, S., Heuser, J., Vale, R. D., and McNally, F. J. (1998) Cell 93, 277-287
10. McNally, K. P., Bazirgan, O. A., and McNally, F. J. (2000) J. Cell Sci. 113, 1623-1633
11. McNally, F. J., Okawa, K., Iwamatsu, A., and Vale, R. D. (1996) J. Cell Sci. 109, 561-567
12. McNally, F. J., and Thomas, S. (1998) Mol. Biol. Cell 9, 1847-1861
13. Hartman, J. J., and Vale, R. D. (1999) Science 286, 782-785
14. Lupas, A. N., and Martin, J. (2002) Curr. Opin. Struct. Biol. 12, 746-753
15. Ogura, T., and Wilkinson, A. J. (2001) Genes Cells 6, 575-597
16. Stoppin-Mellet, V., Gaillard, J., Timmers, T., Neumann, E., Conway, J., and Vantard, M. (2007) Plant Physiol. Biochem. 45, 867-877
17. Iwaya, N., Goda, N., Unzai, S., Fujiwara, K., Tanaka, T., Tomii, K., Tochio, H., Shirakawa, M., and Hiroaki, H. (2007) J. Biomol. NMR 37, 53-63
18. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
19. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Griffiths-Jones, S., Howe, K. L., Marshall, M., and Sonnhammer, E. L. (2002) Nucleic Acids Res. 30, 276-280
20. Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C., and Eddy, S. R. (2004) Nucleic Acids Res. 32, D138-D141
21. Letunic, I., Copley, R. R., Schmidt, S., Ciccarelli, F. D., Doerks, T., Schultz, J., Ponting, C. P., and Bork, P. (2004) Nucleic Acids Res. 32, D142-D144
22. Tomii, K., and Akiyama, Y. (2004) Bioinformatics 20, 594-595
23. Shi, J., Blundell, T. L., and Mizuguchi, K. (2001) J. Mol. Biol. 310, 243-257
24. Ciccarelli, F. D., Proukakis, C., Patel, H., Cross, H., Azam, S., Patton, M. A., Bork, P., and Crosby, A. H. (2003) Genomics 81, 437-441
25. Goda, N., Tenno, T., Takasu, H., Hiroaki, H., and Shirakawa, M. (2004) Protein Sci. 13, 652-658
26. Yamazaki, T., Lee, W., Arrowsmith, C. H., Muhandiram, D. R., and Kay, L. E. (1994) J. Am. Chem. Soc. 116, 11655-11666
27. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., 3rd, Rance, M., and Skelton, N. J. (2007) Protein NMR Spectroscopy: Principles and Practice, 2nd Ed., pp. 535-673, Academic Press, San Diego
28. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
29. Goddard, T. D., and Kneller, D. G. (2004) SPARKY, Version 3, University of California, San Francisco
30. Herrmann, T., Güntert, P., and Wüthrich, K. (2002) J. Mol. Biol. 319, 209-227
31. Guntert, P. (2003) Prog. Nucleic Magn. Reson. Spect. 43, 105-125
32. Cornilescu, G., Delaglio, F., and Bax, A. (1999) J. Biomol. NMR 13, 289-302
33. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graph. 14, 29-32
34. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
35. Obita, T., Saksena, S., Ghazi-Tabatabai, S., Gill, D. J., Perisic, O., Emr, S. D., and Williams, R. L. (2007) Nature 449, 735-739
36. Fröhlich, K. U. (2001) J. Cell Sci. 114, 1601-1602
37. Holm, L., and Sander, C. (1997) Nucleic Acids Res. 25, 231-234
38. Sherwood, N. T., Sun, Q., Xue, M., Zhang, B., and Zinn, K. (2004) PLoS. Biol. 2, e429
39. Evans, K. J., Gomes, E. R., Reisenweber, S. M., Gundersen, G. G., and Lauring, B. P. (2005) J. Cell Biol. 168, 599-606
40. Takasu, H., Jee, J. G., Ohno, A., Goda, N., Fujiwara, K., Tochio, H., Shirakawa, M., and Hiroaki, H. (2005) Biochem. Biophys. Res. Commun. 334, 460-465
41. Scott, A., Gaspar, J., Stuchell-Brereton, M. D., Alam, S. L., Skalicky, J. J., and Sundquist, W. I. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 13813-13818
42. White, S. R., Evans, K. J., Lary, J., Cole, J. L., and Lauring, B. (2007) J. Cell Biol. 176, 995-1005
43. Patel, H., Cross, H., Proukakis, C., Hershberger, R., Bork, P., Ciccarelli, F. D., Patton, M. A., McKusick, V. A., and Crosby, A. H. (2002) Nat. Genet. 31, 347-348
44. Ravelli, R. B., Gigant, B., Curmi, P. A., Jourdain, I., Lachkar, S., Sobel, A., and Knossow, M. (2004) Nature 428, 198-202
45. Slep, K. C., and Vale, R. D. (2007) Mol. Cell 27, 976-991
46. Mishima, M., Maesaki, R., Kasa, M., Watanabe, T., Fukata, M., Kaibuchi, K., and Hakoshima, T. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 10346-10351
47. Guasch, A., Aloria, K., Pérez, R., Avila, J., Zabala, J. C., and Coll, M. (2002) J. Mol. Biol. 318, 1139-1149
48. Carter, A. P., Garbarino, J. E., Wilson-Kubalek, E. M., Shipley, W. E., Cho, C., Milligan, R. A., Vale, R. D., and Gibbons, I. R. (2008) Science 322, 1691-1695
49. Kikkawa, M., and Hirokawa, N. (2006) EMBO J. 25, 4187-4194
50. Nogales, E., Wolf, S. G., and Downing, K. H. (1998) Nature 391, 199-203
51. Bodey, A. J., Kikkawa, M., and Moores, C. A. (2009) J. Mol. Biol. 388, 218-224
52. Stuchell-Brereton, M. D., Skalicky, J. J., Kieffer, C., Karren, M. A., Ghaffarian, S., and Sundquist, W. I. (2007) Nature 449, 740-744
53. Kieffer, C., Skalicky, J. J., Morita, E., De Domenico, I., Ward, D. M., Kaplan, J., and Sundquist, W. I. (2008) Dev. Cell 15, 62-73
54. Toyo-Oka, K., Sasaki, S., Yano, Y., Mori, D., Kobayashi, T., Toyoshima, Y. Y., Tokuoka, S. M., Ishii, S., Shimizu, T., Muramatsu, M., Hiraiwa, N., Yoshiki, A., Wynshaw-Boris, A., and Hirotsune, S. (2005) Hum. Mol. Genet. 14, 3113-3128
55. Hanson, P. I., Roth, R., Lin, Y., and Heuser, J. E. (2008) J. Cell Biol. 180, 389-402
56. Nickerson, D. P., Russell, M. R., and Odorizzi, G. (2007) EMBO Rep. 8, 644-650
57. Howard, J., and Hyman, A. A. (2003) Nature 422, 753-758
58. Yang, D., Rismanchi, N., Renvoisé, B., Lippincott-Schwartz, J., Blackstone, C., and Hurley, J. H. (2008) Nat. Struct. Mol. Biol. 15, 1278-1286
59. Sauer, R. T., Bolon, D. N., Burton, B. M., Burton, R. E., Flynn, J. M., Grant, R. A., Hersch, G. L., Joshi, S. A., Kenniston, J. A., Levchenko, I., Neher, S. B., Oakes, E. S., Siddiqui, S. M., Wah, D. A., and Baker, T. A. (2004) Cell 119, 9-18
60. Lum, R., Tkach, J. M., Vierling, E., and Glover, J. R. (2004) J. Biol. Chem. 279, 29139-29146
61. Roll-Mecak, A., and Vale, R. D. (2008) Nature 451, 363-367
62. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) Nucleic Acids Res. 25, 4876-4882
63. Armon, A., Graur, D., and Ben-Tal, N. (2001) J. Mol. Biol. 307, 447-463