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Volumn 59, Issue 3, 2010, Pages 574-587

Effect of the earthworms lumbricus terrestris and aporrectodea caliginosa on bacterial diversity in soil

Author keywords

[No Author keywords available]

Indexed keywords

ALCALIGENES; ALPHAPROTEOBACTERIA; APORRECTODEA CALIGINOSA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; DELTAPROTEOBACTERIA; FIRMICUTES; FLAVOBACTERIA; GAMMAPROTEOBACTERIA; LUMBRICUS TERRESTRIS; PLANCTOMYCETES; PSEUDOMONAS; SPHINGOBACTERIA; SPHINGOMONADACEAE; UNCLASSIFIED SPHINGOMONADACEAE; VERRUCOMICROBIA;

EID: 77952492820     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-009-9604-y     Document Type: Article
Times cited : (78)

References (59)
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
  • 4
    • 0036682224 scopus 로고    scopus 로고
    • PRIMROSE: A computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
    • Ashelford KE, Weightman AJ, Fry JC (2002) PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res 30: 3481-3489.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3481-3489
    • Ashelford, K.E.1    Weightman, A.J.2    Fry, J.C.3
  • 6
    • 0001882190 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam BJ, Caetano-Anolles G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 80: 81-84.
    • (1991) Anal Biochem , vol.80 , pp. 81-84
    • Bassam, B.J.1    Caetano-Anolles, G.2    Gresshoff, P.M.3
  • 10
    • 0029537236 scopus 로고
    • How do earthworms affect microfloral and faunal community diversity?
    • Brown GG (1995) How do earthworms affect microfloral and faunal community diversity? Plant Soil 170: 209-231.
    • (1995) Plant Soil , vol.170 , pp. 209-231
    • Brown, G.G.1
  • 11
    • 0034393195 scopus 로고    scopus 로고
    • The nonparametric Behrens-Fisher problem: Asymptotic theory and a small-sample approximation
    • Brunner E, Munzel U (2000) The nonparametric Behrens-Fisher problem: asymptotic theory and a small-sample approximation. Biometrical J 42: 17-25.
    • (2000) Biometrical J , vol.42 , pp. 17-25
    • Brunner, E.1    Munzel, U.2
  • 15
    • 0008661880 scopus 로고
    • Studies on the intestinal actinomycete flora of Eisenia lucens (Annelida, Oligochaeta)
    • Contreras E (1980) Studies on the intestinal actinomycete flora of Eisenia lucens (Annelida, Oligochaeta). Pedobiologia 20: 411-416.
    • (1980) Pedobiologia , vol.20 , pp. 411-416
    • Contreras, E.1
  • 16
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • Daims H, Brühl A, Amann R, Schleifer K-H, Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 17
    • 35848953626 scopus 로고    scopus 로고
    • As the worm turns: The earthworm gut as a transient habitat for soil microbial biomes
    • Drake HL, Horn MA (2007) As the worm turns: the earthworm gut as a transient habitat for soil microbial biomes. Annu Rev Microbiol 61: 169-189.
    • (2007) Annu Rev Microbiol , vol.61 , pp. 169-189
    • Drake, H.L.1    Horn, M.A.2
  • 18
    • 0024258867 scopus 로고
    • Interactions between earthworms and microorganisms in organic-matter breakdown
    • Edwards CA, Fletcher KE (1988) Interactions between earthworms and microorganisms in organic-matter breakdown. Agric Ecosyst Environ 24: 235-247.
    • (1988) Agric Ecosyst Environ , vol.24 , pp. 235-247
    • Edwards, C.A.1    Fletcher, K.E.2
  • 19
    • 2142825652 scopus 로고    scopus 로고
    • Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L (Oligochaeta: Lumbricidae)
    • Egert M, Marhan S, Wagner B, Scheu S, Friedrich MW (2004) Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L (Oligochaeta: Lumbricidae). FEMS Microb Ecol 48: 187-197.
    • (2004) FEMS Microb Ecol , vol.48 , pp. 187-197
    • Egert, M.1    Marhan, S.2    Wagner, B.3    Scheu, S.4    Friedrich, M.W.5
  • 20
    • 0242544069 scopus 로고    scopus 로고
    • Microbial community structure in midgut and hindgut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae)
    • Egert M, Wagner B, Lemke T, Brune A, Friedrich MW (2003) Microbial community structure in midgut and hindgut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae). Appl Environ Microbiol 69: 6659-6668.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 6659-6668
    • Egert, M.1    Wagner, B.2    Lemke, T.3    Brune, A.4    Friedrich, M.W.5
  • 21
    • 0036195306 scopus 로고    scopus 로고
    • Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus
    • Furlong MA, Singleton DR, Coleman DC, Whitman WB (2002) Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl Environ Microbiol 68: 1265-1279.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1265-1279
    • Furlong, M.A.1    Singleton, D.R.2    Coleman, D.C.3    Whitman, W.B.4
  • 26
    • 33144485266 scopus 로고    scopus 로고
    • In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut
    • Horn MA, Mertel R, Gehre M, Kastner M, Drake HL (2006) In vivo emission of dinitrogen by earthworms via denitrifying bacteria in the gut. Appl Environ Microbiol 72: 1013-1018.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1013-1018
    • Horn, M.A.1    Mertel, R.2    Gehre, M.3    Kastner, M.4    Drake, H.L.5
  • 29
    • 0028948028 scopus 로고
    • Comparative assessment of the aerobic and anaerobic microfloras of earthworm guts and forest soils
    • Karsten GR, Drake HL (1995) Comparative assessment of the aerobic and anaerobic microfloras of earthworm guts and forest soils. Appl Environ Microbiol 61: 1039-1044.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1039-1044
    • Karsten, G.R.1    Drake, H.L.2
  • 32
    • 0027333211 scopus 로고
    • Actinomycete communities in earthworm guts and surrounding soil
    • Kristufek V, Ravasz K, Pizl V (1993) Actinomycete communities in earthworm guts and surrounding soil. Pedobiologia 37: 379-384.
    • (1993) Pedobiologia , vol.37 , pp. 379-384
    • Kristufek, V.1    Ravasz, K.2    Pizl, V.3
  • 33
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske CR, Barns SM, Busch JD (1997) Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl Environ Microbiol 63: 3614-3621.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 35
    • 0037258055 scopus 로고    scopus 로고
    • ProbeBase-an online resource for rRNA-targeted oligonucleotide probes
    • Loy A, Horn M, Wagner M (2003) ProbeBase-an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res 31: 514-516.
    • (2003) Nucleic Acids Res , vol.31 , pp. 514-516
    • Loy, A.1    Horn, M.2    Wagner, M.3
  • 36
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer K-H, Wagner M (2002) Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol 68: 5064-5081.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Adamczyk, J.4    Meier, H.5    Ernst, J.6    Schleifer, K.-H.7    Wagner, M.8
  • 37
    • 9344247522 scopus 로고    scopus 로고
    • Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment
    • Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer K-H (1996) Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiol 142: 1097-1106.
    • (1996) Microbiol , vol.142 , pp. 1097-1106
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Vancanneyt, M.4    Schleifer, K.-H.5
  • 38
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: Problems and solutions
    • Manz W, Amann R, Ludwig W, Wagner M, Schleifer K-H (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Microbiol 15: 593-600.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 40
    • 0033066743 scopus 로고    scopus 로고
    • Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content
    • Meier H, Amann R, Ludwig W, Schleifer K-H (1999) Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content. Syst Appl Microbiol 22: 186-196.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 186-196
    • Meier, H.1    Amann, R.2    Ludwig, W.3    Schleifer, K.-H.4
  • 41
    • 42049100522 scopus 로고    scopus 로고
    • Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities
    • Mühling M, Woolven-Allen J, Murrell JC, Joint I (2008) Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. ISME J 2: 379-392.
    • (2008) ISME J , vol.2 , pp. 379-392
    • Mühling, M.1    Woolven-Allen, J.2    Murrell, J.C.3    Joint, I.4
  • 42
    • 63849271825 scopus 로고    scopus 로고
    • Candidatus Lumbricincola', a novel lineage of uncultured Mollicutes from earthworms of family Lumbricidae
    • Nechitaylo TY, Timmis KN, Golyshin PN (2009) 'Candidatus Lumbricincola', a novel lineage of uncultured Mollicutes from earthworms of family Lumbricidae. Environ Microbiol 11: 1016-1026.
    • (2009) Environ Microbiol , vol.11 , pp. 1016-1026
    • Nechitaylo, T.Y.1    Timmis, K.N.2    Golyshin, P.N.3
  • 44
    • 0002882502 scopus 로고    scopus 로고
    • History of Clitellata
    • Omodeo P (1998) History of Clitellata. Ital J Zool 65: 51-73.
    • (1998) Ital J Zool , vol.65 , pp. 51-73
    • Omodeo, P.1
  • 45
    • 0027829996 scopus 로고
    • Effect of passage through the intestinal tract of detritovore earthworms (Lumbricus spp.) on the number of selected Gram-negative and total bacteria
    • Pedersen JC, Hendriksen NB (1993) Effect of passage through the intestinal tract of detritovore earthworms (Lumbricus spp.) on the number of selected Gram-negative and total bacteria. Biol Fertil Soils 16: 227-232.
    • (1993) Biol Fertil Soils , vol.16 , pp. 227-232
    • Pedersen, J.C.1    Hendriksen, N.B.2
  • 46
    • 1842607847 scopus 로고    scopus 로고
    • R Development Core Teamhttp: Vienna: R Foundation for Statistical Computing
    • R Development Core Team (2004) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna http://www. r-project. org.
    • (2004) R: A Language and Environment for Statistical Computing
  • 47
    • 0028172253 scopus 로고
    • In situ probing of Gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides
    • Roller C, Wagner M, Amann R, Ludwig W, Schleifer K-H (1994) In situ probing of Gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides. Microbiol 140: 2849-2858.
    • (1994) Microbiol , vol.140 , pp. 2849-2858
    • Roller, C.1    Wagner, M.2    Amann, R.3    Ludwig, W.4    Schleifer, K.-H.5
  • 48
    • 0000461385 scopus 로고
    • Algorithm AS181: The W test for normality
    • Royston P (1982) Algorithm AS181: the W test for normality. Appl Stat 31: 176-180.
    • (1982) Appl Stat , vol.31 , pp. 176-180
    • Royston, P.1
  • 49
    • 0003252192 scopus 로고    scopus 로고
    • Preparation and analysis of eukaryotic genomic DNA
    • J. Sambrook and D. W. Russel (Eds.), New York: Cold Spring Harbor Laboratory Press
    • Sambrook J, Russel DW (2001) Preparation and analysis of eukaryotic genomic DNA. In: Sambrook J, Russel DW (eds) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York, p 6. 22.
    • (2001) Molecular Cloning: A Laboratory Manual
    • Sambrook, J.1    Russel, D.W.2
  • 50
    • 0142136145 scopus 로고    scopus 로고
    • Phylogenetic diversity, abundance, and axial distribution of bacteria in the intestinal tract of two soil-feeding termites (Cubitermes spp)
    • Schmitt-Wagner D, Friedrich MW, Wagner B, Brune A (2003) Phylogenetic diversity, abundance, and axial distribution of bacteria in the intestinal tract of two soil-feeding termites (Cubitermes spp). Appl Env Microbiol 69: 6007-6017.
    • (2003) Appl Env Microbiol , vol.69 , pp. 6007-6017
    • Schmitt-Wagner, D.1    Friedrich, M.W.2    Wagner, B.3    Brune, A.4
  • 51
    • 0036132828 scopus 로고    scopus 로고
    • Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L
    • Schönholzer F, Hahn D, Zarda B, Zeyer J (2002) Automated image analysis and in situ hybridization as tools to study bacterial populations in food resources, gut and cast of Lumbricus terrestris L. J Microbiol Meth 48: 53-68.
    • (2002) J Microbiol Meth , vol.48 , pp. 53-68
    • Schönholzer, F.1    Hahn, D.2    Zarda, B.3    Zeyer, J.4
  • 52
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F, Tebbe CC (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64: 4870-4876.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 53
    • 0242659175 scopus 로고    scopus 로고
    • Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta)
    • Singleton DR, Hendrix PF, Coleman DC, Whitman WB (2003) Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta). Soil Biol Biochem 35: 1547-1555.
    • (2003) Soil Biol Biochem , vol.35 , pp. 1547-1555
    • Singleton, D.R.1    Hendrix, P.F.2    Coleman, D.C.3    Whitman, W.B.4
  • 54
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 56
    • 0034131203 scopus 로고    scopus 로고
    • Microbial community indigenous to the earthworm Eisenia foetida
    • Toyota K, Kimura M (2000) Microbial community indigenous to the earthworm Eisenia foetida. Biol Fertil Soils 31: 187-190.
    • (2000) Biol Fertil Soils , vol.31 , pp. 187-190
    • Toyota, K.1    Kimura, M.2
  • 57
    • 41049096327 scopus 로고    scopus 로고
    • Tetraponera ants have gut symbionts related to nitrogen-fixing root-nodule bacteria
    • van Borm S, Buschinger A, Boomsma JJ, Billen J (2002) Tetraponera ants have gut symbionts related to nitrogen-fixing root-nodule bacteria. Proc Biol Sci 269: 2023-2027.
    • (2002) Proc Biol Sci , vol.269 , pp. 2023-2027
    • van Borm, S.1    Buschinger, A.2    Boomsma, J.J.3    Billen, J.4
  • 58
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
    • Wallner G, Amann R, Beisker W (1993) Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14: 136-143.
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 59
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou J, Davey ME, Figueras JB, Rivkina E, Gilichinsky D, Tiedje JM (1997) Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiol 143: 3913-3919.
    • (1997) Microbiol , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


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