메뉴 건너뛰기




Volumn 2010, Issue , 2010, Pages

Molecular surface mesh generation by filtering electron density map

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRON DENSITIES; GAUSSIAN FUNCTIONS; INVERSE TRANSFORMS; ISO-SURFACING; MARCHING CUBES ALGORITHM; MESH REPRESENTATION; MOLECULAR SURFACES; VAN DER WAALS; VISUAL QUALITIES;

EID: 77952490114     PISSN: 16874188     EISSN: 16874196     Source Type: Journal    
DOI: 10.1155/2010/923780     Document Type: Article
Times cited : (15)

References (38)
  • 1
    • 0032483312 scopus 로고    scopus 로고
    • Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases
    • Fetrow J. S., Skolnick J., Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases Journal of Molecular Biology 1998 281 5 949 968
    • (1998) Journal of Molecular Biology , vol.281 , Issue.5 , pp. 949-968
    • Fetrow, J.S.1    Skolnick, J.2
  • 2
    • 0037305974 scopus 로고    scopus 로고
    • Overview of structural genomics: From structure to function
    • Zhang C., Kim S.-H., Overview of structural genomics: from structure to function Current Opinion in Chemical Biology 2003 7 1 28 32
    • (2003) Current Opinion in Chemical Biology , vol.7 , Issue.1 , pp. 28-32
    • Zhang, C.1    Kim, S.-H.2
  • 4
    • 0026730489 scopus 로고
    • Structure-based strategies for drug design and discovery
    • Kuntz I. D., Structure-based strategies for drug design and discovery Science 1992 257 5073 1078 1082
    • (1992) Science , vol.257 , Issue.5073 , pp. 1078-1082
    • Kuntz, I.D.1
  • 5
    • 21544474149 scopus 로고    scopus 로고
    • Keynote review: Structural biology and drug discovery
    • Congreve M., Murray C., Blundell T., Keynote review: structural biology and drug discovery Drug Discovery Today 2005 10 13 895 907
    • (2005) Drug Discovery Today , vol.10 , Issue.13 , pp. 895-907
    • Congreve, M.1    Murray, C.2    Blundell, T.3
  • 6
    • 0025787845 scopus 로고
    • Contribution of the hydrophobic effect to protein stability: Analysis based on simulations of the ile-96- ala mutation in barnase
    • Prevost M., Wodak S. J., Tidor B., Karplus M., Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the ile-96- ala mutation in barnase Proceedings of the National Academy of Sciences 1991 88 23 10880 10884
    • (1991) Proceedings of the National Academy of Sciences , vol.88 , Issue.23 , pp. 10880-10884
    • Prevost, M.1    Wodak, S.J.2    Tidor, B.3    Karplus, M.4
  • 7
    • 17044404749 scopus 로고    scopus 로고
    • Computer prediction of drug resistance mutations in proteins
    • Cao Z. W., Han L. Y., Zheng C. J., Computer prediction of drug resistance mutations in proteins Drug Discovery Today 2005 10 7 521 529
    • (2005) Drug Discovery Today , vol.10 , Issue.7 , pp. 521-529
    • Cao, Z.W.1    Han, L.Y.2    Zheng, C.J.3
  • 11
    • 0031565730 scopus 로고    scopus 로고
    • Modelling protein docking using shape complementarity, electrostatics and biochemical information
    • Gabb H. A., Jackson R. M., Sternberg M. J. E., Modelling protein docking using shape complementarity, electrostatics and biochemical information Journal of Molecular Biology 1997 272 1 106 120
    • (1997) Journal of Molecular Biology , vol.272 , Issue.1 , pp. 106-120
    • Gabb, H.A.1    Jackson, R.M.2    Sternberg, M.J.E.3
  • 15
    • 2942517681 scopus 로고    scopus 로고
    • Enzyme/non-enzyme discrimination and prediction of enzyme active site location using charge-based methods
    • Bate P., Warwicker J., Enzyme/non-enzyme discrimination and prediction of enzyme active site location using charge-based methods Journal of Molecular Biology 2004 340 2 263 276
    • (2004) Journal of Molecular Biology , vol.340 , Issue.2 , pp. 263-276
    • Bate, P.1    Warwicker, J.2
  • 17
    • 33748779553 scopus 로고    scopus 로고
    • Insights into protein-protein interfaces using a Bayesian network prediction method
    • Bradford J. R., Needham C. J., Bulpitt A. J., Westhead D. R., Insights into protein-protein interfaces using a Bayesian network prediction method Journal of Molecular Biology 2006 362 2 365 386
    • (2006) Journal of Molecular Biology , vol.362 , Issue.2 , pp. 365-386
    • Bradford, J.R.1    Needham, C.J.2    Bulpitt, A.J.3    Westhead, D.R.4
  • 18
    • 34248232474 scopus 로고    scopus 로고
    • HotPatch: A statistical approach to finding biologically relevant features on protein surfaces
    • Pettit F. K., Bare E., Tsai A., Bowie J. U., HotPatch: a statistical approach to finding biologically relevant features on protein surfaces Journal of Molecular Biology 2007 369 3 863 879
    • (2007) Journal of Molecular Biology , vol.369 , Issue.3 , pp. 863-879
    • Pettit, F.K.1    Bare, E.2    Tsai, A.3    Bowie, J.U.4
  • 19
    • 74249098462 scopus 로고    scopus 로고
    • Regression applied to protein binding site prediction and comparison with classification
    • Giard J., Ambroise J., Gala J. L., Macq B., Regression applied to protein binding site prediction and comparison with classification BMC Bioinformatics 2009 10 1 276
    • (2009) BMC Bioinformatics , vol.10 , Issue.1 , pp. 276
    • Giard, J.1    Ambroise, J.2    Gala, J.L.3    MacQ, B.4
  • 20
    • 0020477017 scopus 로고
    • Stabilization of protein structure by sugars
    • Arakawa T., Timasheff S. N., Stabilization of protein structure by sugars Biochemistry 1982 21 25 6536 6544
    • (1982) Biochemistry , vol.21 , Issue.25 , pp. 6536-6544
    • Arakawa, T.1    Timasheff, S.N.2
  • 21
    • 29244451863 scopus 로고    scopus 로고
    • Progress in scientific visualization
    • Max N., Progress in scientific visualization The Visual Computer 2005 21 12 979 984
    • (2005) The Visual Computer , vol.21 , Issue.12 , pp. 979-984
    • Max, N.1
  • 25
    • 0036434222 scopus 로고    scopus 로고
    • Molecular surface modeling and meshing
    • Laug P., Borouchaki H., Molecular surface modeling and meshing Engineering with Computers 2002 18 3 199 210
    • (2002) Engineering with Computers , vol.18 , Issue.3 , pp. 199-210
    • Laug, P.1    Borouchaki, H.2
  • 26
    • 0030040323 scopus 로고    scopus 로고
    • Reduced surface: An efficient way to compute molecular surfaces
    • Sanner M. F., Olson A. J., Spehner J.-C., Reduced surface: an efficient way to compute molecular surfaces Biopolymers 1996 38 3 305 320
    • (1996) Biopolymers , vol.38 , Issue.3 , pp. 305-320
    • Sanner, M.F.1    Olson, A.J.2    Spehner, J.-C.3
  • 29
    • 36448970902 scopus 로고    scopus 로고
    • Molecular surfaces on proteins via beta shapes
    • Ryu J., Park R., Kim D.-S., Molecular surfaces on proteins via beta shapes Computer-Aided Design 2007 39 12 1042 1057
    • (2007) Computer-Aided Design , vol.39 , Issue.12 , pp. 1042-1057
    • Ryu, J.1    Park, R.2    Kim, D.-S.3
  • 30
    • 84867950208 scopus 로고    scopus 로고
    • Quality mesh generation for molecular skin surfaces using restricted union of balls
    • Cheng H.-L., Shi X., Quality mesh generation for molecular skin surfaces using restricted union of balls Computational Geometry 2009 42 3 196 206
    • (2009) Computational Geometry , vol.42 , Issue.3 , pp. 196-206
    • Cheng, H.-L.1    Shi, X.2
  • 31
    • 33745587012 scopus 로고    scopus 로고
    • Quality meshing of implicit solvation models of biomolecular structures
    • Zhang Y., Xu G., Bajaj C. L., Quality meshing of implicit solvation models of biomolecular structures Computer-Aided Geometric Design 2006 23 6 510 530
    • (2006) Computer-Aided Geometric Design , vol.23 , Issue.6 , pp. 510-530
    • Zhang, Y.1    Xu, G.2    Bajaj, C.L.3
  • 37
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimeraa visualization system for exploratory research and analysis
    • Pettersen E. F., Goddard T. D., Huang C. C., UCSF Chimeraa visualization system for exploratory research and analysis Journal of Computational Chemistry 2004 25 13 1605 1612
    • (2004) Journal of Computational Chemistry , vol.25 , Issue.13 , pp. 1605-1612
    • Pettersen, E.F.1    Goddard, T.D.2    Huang, C.C.3
  • 38
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-Pdb viewer: An environment for comparative protein modeling
    • Guex N., Peitsch M., SWISS-MODEL and the Swiss-Pdb viewer: an environment for comparative protein modeling Electrophoresis 1997 18 15
    • (1997) Electrophoresis , vol.18 , Issue.15
    • Guex, N.1    Peitsch, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.