-
1
-
-
0033886560
-
Families of transmembrane transporters selective for amino acids and their derivatives
-
Saier MH. Families of transmembrane transporters selective for amino acids and their derivatives. Microbiology 2000, 146:1775-1795.
-
(2000)
Microbiology
, vol.146
, pp. 1775-1795
-
-
Saier, M.H.1
-
2
-
-
33745712981
-
Enigma Variations for Peptides and Their Transporters in Higher Plants
-
10.1093/aob/mcl099, 2803549, 16735405
-
Waterworth W, Bray CM. Enigma Variations for Peptides and Their Transporters in Higher Plants. Ann Bot 2006, 98:1-8. 10.1093/aob/mcl099, 2803549, 16735405.
-
(2006)
Ann Bot
, vol.98
, pp. 1-8
-
-
Waterworth, W.1
Bray, C.M.2
-
3
-
-
0029144324
-
The PTR family: a new group of peptide transporters
-
10.1111/j.1365-2958.1995.tb02310.x, 7476181
-
Steiner HY, Naider F, Becker JM. The PTR family: a new group of peptide transporters. Mol Microbiol 1995, 16:825-834. 10.1111/j.1365-2958.1995.tb02310.x, 7476181.
-
(1995)
Mol Microbiol
, vol.16
, pp. 825-834
-
-
Steiner, H.Y.1
Naider, F.2
Becker, J.M.3
-
4
-
-
0028151656
-
The POT family of transport proteins
-
10.1016/0968-0004(94)90087-6, 7817396
-
Paulsen IT, Skurray RA. The POT family of transport proteins. Trends Biochem Sci 1994, 19:404. 10.1016/0968-0004(94)90087-6, 7817396.
-
(1994)
Trends Biochem Sci
, vol.19
, pp. 404
-
-
Paulsen, I.T.1
Skurray, R.A.2
-
5
-
-
33644873454
-
TCDB: the Transporter Classification Database for membrane transport protein analyses and information
-
10.1093/nar/gkj001, 1334385, 16381841
-
Saier MH, Tran CV, Barabote RD. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res 2006, 34:D181-186. 10.1093/nar/gkj001, 1334385, 16381841.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Saier, M.H.1
Tran, C.V.2
Barabote, R.D.3
-
6
-
-
34248193815
-
Nitrate transporters and peptide transporters
-
10.1016/j.febslet.2007.04.047, 17481610
-
Tsay YF, Chiu CC, Tsai CB, Ho CH, Hsu PK. Nitrate transporters and peptide transporters. FEBS Letters 2007, 581:2290-2300. 10.1016/j.febslet.2007.04.047, 17481610.
-
(2007)
FEBS Letters
, vol.581
, pp. 2290-2300
-
-
Tsay, Y.F.1
Chiu, C.C.2
Tsai, C.B.3
Ho, C.H.4
Hsu, P.K.5
-
7
-
-
0028200440
-
Cloning of an Arabidopsis histidine transporting protein related to nitrate and peptide transporters
-
10.1016/0014-5793(94)00533-8, 8033999
-
Frommer WB, Hummel S, Rentsch D. Cloning of an Arabidopsis histidine transporting protein related to nitrate and peptide transporters. FEBS Letters 1994, 347:185-189. 10.1016/0014-5793(94)00533-8, 8033999.
-
(1994)
FEBS Letters
, vol.347
, pp. 185-189
-
-
Frommer, W.B.1
Hummel, S.2
Rentsch, D.3
-
8
-
-
0029154658
-
NTR1 encodes a high affinity oligopeptide transporter in Arabidopsis
-
10.1016/0014-5793(95)00853-2, 7656990
-
Rentsch D, Laloi M, Rouhara I, Schmelzer E, Delrot S, Frommer WB. NTR1 encodes a high affinity oligopeptide transporter in Arabidopsis. FEBS Letters 1995, 370:264-268. 10.1016/0014-5793(95)00853-2, 7656990.
-
(1995)
FEBS Letters
, vol.370
, pp. 264-268
-
-
Rentsch, D.1
Laloi, M.2
Rouhara, I.3
Schmelzer, E.4
Delrot, S.5
Frommer, W.B.6
-
9
-
-
0030026111
-
Cloning of a second Arabidopsis peptide transport gene
-
10.1104/pp.110.1.171, 157706, 8587981
-
Song W, Steiner HY, Zhang L, Naider F, Stacey G, Becker JM. Cloning of a second Arabidopsis peptide transport gene. Plant Physiol 1996, 110:171-178. 10.1104/pp.110.1.171, 157706, 8587981.
-
(1996)
Plant Physiol
, vol.110
, pp. 171-178
-
-
Song, W.1
Steiner, H.Y.2
Zhang, L.3
Naider, F.4
Stacey, G.5
Becker, J.M.6
-
10
-
-
8444249373
-
AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis
-
10.1111/j.1365-313X.2004.02224.x, 15500465
-
Dietrich D, Hammes U, Thor K, Suter-Grotemeyer M, Fluckiger R, Slusarenko AJ, Ward JM, Rentsch D. AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis. Plant J 2004, 40:488-499. 10.1111/j.1365-313X.2004.02224.x, 15500465.
-
(2004)
Plant J
, vol.40
, pp. 488-499
-
-
Dietrich, D.1
Hammes, U.2
Thor, K.3
Suter-Grotemeyer, M.4
Fluckiger, R.5
Slusarenko, A.J.6
Ward, J.M.7
Rentsch, D.8
-
11
-
-
0031177731
-
Antisense expression of the peptide transport gene AtPTR2-B delays flowering and arrests seed development in transgenic Arabidopsis plants
-
10.1104/pp.114.3.927, 158381, 9232875
-
Song W, Koh S, Czako M, Marton L, Drenkard E, Becker JM, Stacey G. Antisense expression of the peptide transport gene AtPTR2-B delays flowering and arrests seed development in transgenic Arabidopsis plants. Plant Physiol 1997, 114:927-935. 10.1104/pp.114.3.927, 158381, 9232875.
-
(1997)
Plant Physiol
, vol.114
, pp. 927-935
-
-
Song, W.1
Koh, S.2
Czako, M.3
Marton, L.4
Drenkard, E.5
Becker, J.M.6
Stacey, G.7
-
12
-
-
22144460144
-
Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis
-
10.1007/s00894-005-0257-6, 15889294
-
Karim S, Lundh D, Holmstrom KO, Mandal A, Pirhonen M. Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis. J Mol Model 2005, 11:226-236. 10.1007/s00894-005-0257-6, 15889294.
-
(2005)
J Mol Model
, vol.11
, pp. 226-236
-
-
Karim, S.1
Lundh, D.2
Holmstrom, K.O.3
Mandal, A.4
Pirhonen, M.5
-
13
-
-
34247352031
-
AtPTR3, a wound-induced peptide transporter needed for defence against virulent bacterial pathogens in Arabidopsis
-
10.1007/s00425-006-0451-5, 17143616
-
Karim S, Holmstrom KO, Mandal A, Dahl P, Hohmann S, Brader G, Palva ET, Pirhonen M. AtPTR3, a wound-induced peptide transporter needed for defence against virulent bacterial pathogens in Arabidopsis. Planta 2007, 225:1431-1445. 10.1007/s00425-006-0451-5, 17143616.
-
(2007)
Planta
, vol.225
, pp. 1431-1445
-
-
Karim, S.1
Holmstrom, K.O.2
Mandal, A.3
Dahl, P.4
Hohmann, S.5
Brader, G.6
Palva, E.T.7
Pirhonen, M.8
-
14
-
-
57749093210
-
AtPTR1 and AtPTR5 transport dipeptides in planta
-
10.1104/pp.108.123844, 2556804, 18753286
-
Komarova NY, Thor K, Gubler A, Meier S, Dietrich D, Weichert A, Suter M, Tegeder M, Rentsch D. AtPTR1 and AtPTR5 transport dipeptides in planta. Plant Physiol 2008, 148:856-869. 10.1104/pp.108.123844, 2556804, 18753286.
-
(2008)
Plant Physiol
, vol.148
, pp. 856-869
-
-
Komarova, N.Y.1
Thor, K.2
Gubler, A.3
Meier, S.4
Dietrich, D.5
Weichert, A.6
Suter, M.7
Tegeder, M.8
Rentsch, D.9
-
15
-
-
0032127987
-
Cloning and functional characterisation of a peptide transporter expressed in the scutellum of barley grain during the early stages of germination
-
10.1046/j.1365-313X.1998.00199.x, 9721680
-
West CE, Waterworth WM, Stephens SM, Smith CP, Bray CM. Cloning and functional characterisation of a peptide transporter expressed in the scutellum of barley grain during the early stages of germination. Plant J 1998, 15:221-229. 10.1046/j.1365-313X.1998.00199.x, 9721680.
-
(1998)
Plant J
, vol.15
, pp. 221-229
-
-
West, C.E.1
Waterworth, W.M.2
Stephens, S.M.3
Smith, C.P.4
Bray, C.M.5
-
16
-
-
0033931153
-
The barley scutellar peptide transporter: biochemical characterization and localization to the plasma membrane
-
10.1093/jexbot/51.348.1201, 10937695
-
Waterworth WM, West CE, Bray CM. The barley scutellar peptide transporter: biochemical characterization and localization to the plasma membrane. J Exp Bot 2000, 51:1201-1209. 10.1093/jexbot/51.348.1201, 10937695.
-
(2000)
J Exp Bot
, vol.51
, pp. 1201-1209
-
-
Waterworth, W.M.1
West, C.E.2
Bray, C.M.3
-
17
-
-
20044370995
-
A role for phosphorylation in the regulation of the barley scutellar peptide transporter HvPTR1 by amino acids
-
10.1093/jxb/eri149, 15824072
-
Waterworth WM, Ashley MK, West CE, Sunderland PA, Bray CM. A role for phosphorylation in the regulation of the barley scutellar peptide transporter HvPTR1 by amino acids. J Exp Bot 2005, 56:1545-1552. 10.1093/jxb/eri149, 15824072.
-
(2005)
J Exp Bot
, vol.56
, pp. 1545-1552
-
-
Waterworth, W.M.1
Ashley, M.K.2
West, C.E.3
Sunderland, P.A.4
Bray, C.M.5
-
18
-
-
0033103752
-
Transporters for ammonium, amino acids and peptides are expressed in pitchers of the carnivorous plant Nepenthes
-
10.1046/j.1365-313X.1999.00414.x, 10230062
-
Schulze W, Frommer WB, Ward JM. Transporters for ammonium, amino acids and peptides are expressed in pitchers of the carnivorous plant Nepenthes. Plant J 1999, 17:637-646. 10.1046/j.1365-313X.1999.00414.x, 10230062.
-
(1999)
Plant J
, vol.17
, pp. 637-646
-
-
Schulze, W.1
Frommer, W.B.2
Ward, J.M.3
-
19
-
-
0042466166
-
Peptide and amino acid transporters are differentially regulated during seed development and germination in faba bean
-
10.1104/pp.103.024422, 181280, 12913151
-
Miranda M, Borisjuk L, Tewes A, Dietrich D, Rentsch D, Weber H, Wobus U. Peptide and amino acid transporters are differentially regulated during seed development and germination in faba bean. Plant Physiol 2003, 132:1950-1960. 10.1104/pp.103.024422, 181280, 12913151.
-
(2003)
Plant Physiol
, vol.132
, pp. 1950-1960
-
-
Miranda, M.1
Borisjuk, L.2
Tewes, A.3
Dietrich, D.4
Rentsch, D.5
Weber, H.6
Wobus, U.7
-
20
-
-
67649319485
-
Nitrogen affects cluster root formation and expression of putative peptide transporters
-
10.1093/jxb/erp111, 2692012, 19380419
-
Paungfoo-Lonhienne C, Schenk PM, Lonhienne TG, Brackin R, Meier S, Rentsch D, Schmidt S. Nitrogen affects cluster root formation and expression of putative peptide transporters. J Exp Bot 2009, 60:2665-2776. 10.1093/jxb/erp111, 2692012, 19380419.
-
(2009)
J Exp Bot
, vol.60
, pp. 2665-2776
-
-
Paungfoo-Lonhienne, C.1
Schenk, P.M.2
Lonhienne, T.G.3
Brackin, R.4
Meier, S.5
Rentsch, D.6
Schmidt, S.7
-
21
-
-
0027526320
-
The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter
-
10.1016/0092-8674(93)90399-B, 8453665
-
Tsay YF, Schroeder JI, Feldmann KA, Crawford NM. The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter. Cell 1993, 72:705-713. 10.1016/0092-8674(93)90399-B, 8453665.
-
(1993)
Cell
, vol.72
, pp. 705-713
-
-
Tsay, Y.F.1
Schroeder, J.I.2
Feldmann, K.A.3
Crawford, N.M.4
-
22
-
-
0030346377
-
CHL1 encodes a component of the low-affinity nitrate uptake system in Arabidopsis and shows cell type-specific expression in roots
-
10.1105/tpc.8.12.2183, 161344, 8989878
-
Huang NC, Chiang CS, Crawford NM, Tsay YF. CHL1 encodes a component of the low-affinity nitrate uptake system in Arabidopsis and shows cell type-specific expression in roots. Plant Cell 1996, 8:2183-2191. 10.1105/tpc.8.12.2183, 161344, 8989878.
-
(1996)
Plant Cell
, vol.8
, pp. 2183-2191
-
-
Huang, N.C.1
Chiang, C.S.2
Crawford, N.M.3
Tsay, Y.F.4
-
23
-
-
0033133465
-
CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake
-
10.1105/tpc.11.5.865, 144217, 10330471
-
Liu KH, Huang CY, Tsay YF. CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake. Plant Cell 1999, 11:865-874. 10.1105/tpc.11.5.865, 144217, 10330471.
-
(1999)
Plant Cell
, vol.11
, pp. 865-874
-
-
Liu, K.H.1
Huang, C.Y.2
Tsay, Y.F.3
-
24
-
-
0032437472
-
The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake
-
10.1073/pnas.95.25.15134, 24588, 9844028
-
Wang R, Liu D, Crawford NM. The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake. Proc Natl Acad Sci USA 1998, 95:15134-15139. 10.1073/pnas.95.25.15134, 24588, 9844028.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 15134-15139
-
-
Wang, R.1
Liu, D.2
Crawford, N.M.3
-
25
-
-
0037416191
-
Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation
-
10.1093/emboj/cdg118, 150351, 12606566
-
Liu KH, Tsay YF. Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation. EMBO J 2003, 22:1005-1013. 10.1093/emboj/cdg118, 150351, 12606566.
-
(2003)
EMBO J
, vol.22
, pp. 1005-1013
-
-
Liu, K.H.1
Tsay, Y.F.2
-
26
-
-
0034860030
-
The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is activated and functions in nascent organ development during vegetative and reproductive growth
-
10.1105/tpc.13.8.1761, 139138, 11487691
-
Guo FQ, Wang R, Chen M, Crawford NM. The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is activated and functions in nascent organ development during vegetative and reproductive growth. Plant Cell 2001, 13:1761-1777. 10.1105/tpc.13.8.1761, 139138, 11487691.
-
(2001)
Plant Cell
, vol.13
, pp. 1761-1777
-
-
Guo, F.Q.1
Wang, R.2
Chen, M.3
Crawford, N.M.4
-
27
-
-
0033177984
-
Cloning and functional characterization of an Arabidopsis nitrate transporter gene that encodes a constitutive component of low-affinity uptake
-
10.1105/tpc.11.8.1381, 144300, 10449574
-
Huang NC, Liu KH, Lo HJ, Tsay YF. Cloning and functional characterization of an Arabidopsis nitrate transporter gene that encodes a constitutive component of low-affinity uptake. Plant Cell 1999, 11:1381-1392. 10.1105/tpc.11.8.1381, 144300, 10449574.
-
(1999)
Plant Cell
, vol.11
, pp. 1381-1392
-
-
Huang, N.C.1
Liu, K.H.2
Lo, H.J.3
Tsay, Y.F.4
-
28
-
-
7944225483
-
Mutation of a nitrate transporter, AtNRT1:4, results in a reduced petiole nitrate content and altered leaf development
-
10.1093/pcp/pch143, 15509836
-
Chiu CC, Lin CS, Hsia AP, Su RC, Lin HL, Tsay YF. Mutation of a nitrate transporter, AtNRT1:4, results in a reduced petiole nitrate content and altered leaf development. Plant Cell Physiol 2004, 45:1139-1148. 10.1093/pcp/pch143, 15509836.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 1139-1148
-
-
Chiu, C.C.1
Lin, C.S.2
Hsia, A.P.3
Su, R.C.4
Lin, H.L.5
Tsay, Y.F.6
-
29
-
-
57749097114
-
Mutation of the Arabidopsis NRT1.5 nitrate transporter causes defective root-to-shoot nitrate transport
-
10.1105/tpc.108.060244, 2570733, 18780802
-
Lin SH, Kuo HF, Canivenc G, Lin CS, Lepetit M, Hsu PK, Tillard P, Lin HL, Wang YY, Tsai CB, Gojon A, Tsay YF. Mutation of the Arabidopsis NRT1.5 nitrate transporter causes defective root-to-shoot nitrate transport. Plant Cell 2008, 20:2514-2528. 10.1105/tpc.108.060244, 2570733, 18780802.
-
(2008)
Plant Cell
, vol.20
, pp. 2514-2528
-
-
Lin, S.H.1
Kuo, H.F.2
Canivenc, G.3
Lin, C.S.4
Lepetit, M.5
Hsu, P.K.6
Tillard, P.7
Lin, H.L.8
Wang, Y.Y.9
Tsai, C.B.10
Gojon, A.11
Tsay, Y.F.12
-
30
-
-
62549096826
-
Characterization of the Arabidopsis nitrate transporter NRT1.6 reveals a role of nitrate in early embryo development
-
10.1105/tpc.107.056788, 2630450, 19050168
-
Almagro A, Lin SH, Tsay YF. Characterization of the Arabidopsis nitrate transporter NRT1.6 reveals a role of nitrate in early embryo development. Plant Cell 2008, 20:3289-3299. 10.1105/tpc.107.056788, 2630450, 19050168.
-
(2008)
Plant Cell
, vol.20
, pp. 3289-3299
-
-
Almagro, A.1
Lin, S.H.2
Tsay, Y.F.3
-
31
-
-
34547675939
-
A nitrite transporter associated with nitrite uptake by higher plant chloroplasts
-
10.1093/pcp/pcm073, 17566055
-
Sugiura M, Georgescu MN, Takahashi M. A nitrite transporter associated with nitrite uptake by higher plant chloroplasts. Plant Cell Physiol 2007, 48:1022-1035. 10.1093/pcp/pcm073, 17566055.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1022-1035
-
-
Sugiura, M.1
Georgescu, M.N.2
Takahashi, M.3
-
32
-
-
0032524854
-
Cloning and functional characterization of a Brassica napus transporter that is able to transport nitrate and histidine
-
10.1074/jbc.273.20.12017, 9575142
-
Zhou JJ, Theodoulou FL, Muldin I, Ingemarsson B, Miller AJ. Cloning and functional characterization of a Brassica napus transporter that is able to transport nitrate and histidine. J Biol Chem 1998, 273:12017-12023. 10.1074/jbc.273.20.12017, 9575142.
-
(1998)
J Biol Chem
, vol.273
, pp. 12017-12023
-
-
Zhou, J.J.1
Theodoulou, F.L.2
Muldin, I.3
Ingemarsson, B.4
Miller, A.J.5
-
33
-
-
12144290916
-
A nodule-specific dicarboxylate transporter from alder is a member of the peptide transporter family
-
10.1104/pp.103.032102, 389920, 15001700
-
Jeong J, Suh S, Guan C, Tsay YF, Moran N, Oh CJ, An CS, Demchenko KN, Pawlowski K, Lee Y. A nodule-specific dicarboxylate transporter from alder is a member of the peptide transporter family. Plant Physiol 2004, 134:969-978. 10.1104/pp.103.032102, 389920, 15001700.
-
(2004)
Plant Physiol
, vol.134
, pp. 969-978
-
-
Jeong, J.1
Suh, S.2
Guan, C.3
Tsay, Y.F.4
Moran, N.5
Oh, C.J.6
An, C.S.7
Demchenko, K.N.8
Pawlowski, K.9
Lee, Y.10
-
34
-
-
0034143602
-
Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice
-
10.1104/pp.122.2.379, 58875, 10677431
-
Lin CM, Koh S, Stacey G, Yu SM, Lin TY, Tsay YF. Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice. Plant Physiol 2000, 122:379-388. 10.1104/pp.122.2.379, 58875, 10677431.
-
(2000)
Plant Physiol
, vol.122
, pp. 379-388
-
-
Lin, C.M.1
Koh, S.2
Stacey, G.3
Yu, S.M.4
Lin, T.Y.5
Tsay, Y.F.6
-
35
-
-
66149171183
-
Short panicle1 encodes a putative PTR family transporter and determines rice panicle size
-
10.1111/j.1365-313X.2009.03799.x, 19154200
-
Li S, Qian Q, Fu Z, Zeng D, Meng X, Kyozuka J, Maekawa M, Zhu X, Zhang J, Li J, Wang Y. Short panicle1 encodes a putative PTR family transporter and determines rice panicle size. Plant J 2009, 58:592-605. 10.1111/j.1365-313X.2009.03799.x, 19154200.
-
(2009)
Plant J
, vol.58
, pp. 592-605
-
-
Li, S.1
Qian, Q.2
Fu, Z.3
Zeng, D.4
Meng, X.5
Kyozuka, J.6
Maekawa, M.7
Zhu, X.8
Zhang, J.9
Li, J.10
Wang, Y.11
-
36
-
-
36749013576
-
Strategies for developing Green Super Rice
-
10.1073/pnas.0708013104, 2034246, 17923667
-
Zhang Q. Strategies for developing Green Super Rice. Proc Natl Acad Sci USA 2007, 104:16402-16409. 10.1073/pnas.0708013104, 2034246, 17923667.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 16402-16409
-
-
Zhang, Q.1
-
37
-
-
69249239739
-
Rice 2020: A Call for an international coordinated effort in rice functional genomics
-
10.1093/mp/ssn043, 19825575
-
Zhang Q, Li J, Xue Y, Han B, Deng XW. Rice 2020: A Call for an international coordinated effort in rice functional genomics. Mol Plant 2008, 1:715-719. 10.1093/mp/ssn043, 19825575.
-
(2008)
Mol Plant
, vol.1
, pp. 715-719
-
-
Zhang, Q.1
Li, J.2
Xue, Y.3
Han, B.4
Deng, X.W.5
-
38
-
-
69249217743
-
The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling
-
10.1007/s11103-009-9518-6, 19609685
-
Huang J, Zhao X, Yu H, Ouyang Y, Wang L, Zhang Q. The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling. Plant Mol Biol 2009, 71:207-226. 10.1007/s11103-009-9518-6, 19609685.
-
(2009)
Plant Mol Biol
, vol.71
, pp. 207-226
-
-
Huang, J.1
Zhao, X.2
Yu, H.3
Ouyang, Y.4
Wang, L.5
Zhang, Q.6
-
39
-
-
33747087226
-
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis
-
10.1104/pp.106.080580, 1533929, 16896230
-
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Plant Physiol 2006, 141:1167-1184. 10.1104/pp.106.080580, 1533929, 16896230.
-
(2006)
Plant Physiol
, vol.141
, pp. 1167-1184
-
-
Li, X.1
Duan, X.2
Jiang, H.3
Sun, Y.4
Tang, Y.5
Yuan, Z.6
Guo, J.7
Liang, W.8
Chen, L.9
Yin, J.10
Ma, H.11
Wang, J.12
Zhang, D.13
-
40
-
-
0036720020
-
The Ka/Ks ratio: diagnosing the form of sequence evolution
-
10.1016/S0168-9525(02)02722-1, 12175810
-
Hurst LD. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends in Genetics 2002, 18:486-487. 10.1016/S0168-9525(02)02722-1, 12175810.
-
(2002)
Trends in Genetics
, vol.18
, pp. 486-487
-
-
Hurst, L.D.1
-
41
-
-
30744464824
-
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis
-
10.1093/molbev/msj051, 16280546
-
Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, Leebens-Mack J, Ma H, Altman N, dePamphilis CW. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol 2006, 23:469-478. 10.1093/molbev/msj051, 16280546.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 469-478
-
-
Duarte, J.M.1
Cui, L.2
Wall, P.K.3
Zhang, Q.4
Zhang, X.5
Leebens-Mack, J.6
Ma, H.7
Altman, N.8
dePamphilis, C.W.9
-
42
-
-
34249774567
-
Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth
-
10.1111/j.1365-313X.2007.03097.x, 17470057
-
Kong H, Landherr LL, Frohlich MW, Leebens-Mack J, Ma H, dePamphilis CW. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. Plant J 2007, 50:873-885. 10.1111/j.1365-313X.2007.03097.x, 17470057.
-
(2007)
Plant J
, vol.50
, pp. 873-885
-
-
Kong, H.1
Landherr, L.L.2
Frohlich, M.W.3
Leebens-Mack, J.4
Ma, H.5
dePamphilis, C.W.6
-
43
-
-
13144251179
-
Plant conserved non-coding sequences and paralogue evolution
-
10.1016/j.tig.2004.11.013, 15680516
-
Lockton S, Gaut BS. Plant conserved non-coding sequences and paralogue evolution. Trends Genet 2005, 21:60-65. 10.1016/j.tig.2004.11.013, 15680516.
-
(2005)
Trends Genet
, vol.21
, pp. 60-65
-
-
Lockton, S.1
Gaut, B.S.2
-
44
-
-
3142705042
-
Mechanisms and functional properties of two peptide transporters, AtPTR2 and fPTR2
-
10.1074/jbc.M405192200, 15138259
-
Chiang CS, Stacey G, Tsay YF. Mechanisms and functional properties of two peptide transporters, AtPTR2 and fPTR2. J Biol Chem 2004, 279:30150-30157. 10.1074/jbc.M405192200, 15138259.
-
(2004)
J Biol Chem
, vol.279
, pp. 30150-30157
-
-
Chiang, C.S.1
Stacey, G.2
Tsay, Y.F.3
-
45
-
-
14744269229
-
The evolutionary dynamics of plant duplicate genes
-
10.1016/j.pbi.2004.12.001, 15752990
-
Moore RC, Purugganan MD. The evolutionary dynamics of plant duplicate genes. Curr Opin Plant Biol 2005, 8:122-128. 10.1016/j.pbi.2004.12.001, 15752990.
-
(2005)
Curr Opin Plant Biol
, vol.8
, pp. 122-128
-
-
Moore, R.C.1
Purugganan, M.D.2
-
46
-
-
33747823564
-
MEME: discovering and analyzing DNA and protein sequence motifs
-
10.1093/nar/gkl198, 1538909, 16845028
-
Bailey TL, Williams N, Misleh C, Li WW. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 2006, 34:W369-373. 10.1093/nar/gkl198, 1538909, 16845028.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
47
-
-
0036010128
-
The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is regulated by auxin in both shoots and roots
-
10.1093/jexbot/53.370.835, 11912226
-
Guo FQ, Wang R, Crawford NM. The Arabidopsis dual-affinity nitrate transporter gene AtNRT1.1 (CHL1) is regulated by auxin in both shoots and roots. J Exp Bot 2002, 53:835-844. 10.1093/jexbot/53.370.835, 11912226.
-
(2002)
J Exp Bot
, vol.53
, pp. 835-844
-
-
Guo, F.Q.1
Wang, R.2
Crawford, N.M.3
-
48
-
-
0037253967
-
The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis
-
10.1105/tpc.006312, 143464, 12509525
-
Guo FQ, Young J, Crawford NM. The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis. Plant Cell 2003, 15:107-117. 10.1105/tpc.006312, 143464, 12509525.
-
(2003)
Plant Cell
, vol.15
, pp. 107-117
-
-
Guo, F.Q.1
Young, J.2
Crawford, N.M.3
-
49
-
-
67649841662
-
Conjugates of auxin and cytokinin
-
10.1016/j.phytochem.2009.05.006, 19524990
-
Bajguz A, Piotrowska A. Conjugates of auxin and cytokinin. Phytochemistry 2009, 70:957-969. 10.1016/j.phytochem.2009.05.006, 19524990.
-
(2009)
Phytochemistry
, vol.70
, pp. 957-969
-
-
Bajguz, A.1
Piotrowska, A.2
-
50
-
-
0036256695
-
MapChart: software for the graphical presentation of linkage maps and QTLs
-
10.1093/jhered/93.1.77, 12011185
-
Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 2002, 93:77-78. 10.1093/jhered/93.1.77, 12011185.
-
(2002)
J Hered
, vol.93
, pp. 77-78
-
-
Voorrips, R.E.1
-
51
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
10.1093/nar/25.24.4876, 147148, 9396791
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882. 10.1093/nar/25.24.4876, 147148, 9396791.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
52
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
53
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092, 17488738
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599. 10.1093/molbev/msm092, 17488738.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
54
-
-
70449403422
-
Mobyle: a new full web bioinformatics framework
-
10.1093/bioinformatics/btp493, 2773253, 19689959
-
Neron B, Menager H, Maufrais C, Joly N, Maupetit J, Letort S, Carrere S, Tuffery P, Letondal C. Mobyle: a new full web bioinformatics framework. Bioinformatics 2009, 25:3005-3011. 10.1093/bioinformatics/btp493, 2773253, 19689959.
-
(2009)
Bioinformatics
, vol.25
, pp. 3005-3011
-
-
Neron, B.1
Menager, H.2
Maufrais, C.3
Joly, N.4
Maupetit, J.5
Letort, S.6
Carrere, S.7
Tuffery, P.8
Letondal, C.9
-
55
-
-
2442525077
-
HMM Logos for visualization of protein families
-
10.1186/1471-2105-5-7, 341448, 14736340
-
Schuster-Bockler B, Schultz J, Rahmann S. HMM Logos for visualization of protein families. BMC Bioinformatics 2004, 5:7. 10.1186/1471-2105-5-7, 341448, 14736340.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 7
-
-
Schuster-Bockler, B.1
Schultz, J.2
Rahmann, S.3
-
56
-
-
77950104996
-
A dynamic gene expression atlas covering the entire life cycle of rice
-
10.1111/j.1365-313X.2009.04100.x, 20003165
-
Wang L, Xie W, Chen Y, Tang W, Yang J, Ye R, Liu L, Lin Y, Xu C, Xiao J, Zhang Q. A dynamic gene expression atlas covering the entire life cycle of rice. The Plant Journal 2010, 61:752-766. 10.1111/j.1365-313X.2009.04100.x, 20003165.
-
(2010)
The Plant Journal
, vol.61
, pp. 752-766
-
-
Wang, L.1
Xie, W.2
Chen, Y.3
Tang, W.4
Yang, J.5
Ye, R.6
Liu, L.7
Lin, Y.8
Xu, C.9
Xiao, J.10
Zhang, Q.11
-
57
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
10.1038/ng1543, 15806101
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B, Weigel D, Lohmann JU. A gene expression map of Arabidopsis thaliana development. Nat Genet 2005, 37:501-506. 10.1038/ng1543, 15806101.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
58
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
10.1006/meth.2001.1262, 11846609
-
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408. 10.1006/meth.2001.1262, 11846609.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
59
-
-
33747847779
-
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
-
10.1093/nar/gkl315, 1538804, 16845082
-
Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 2006, 34:W609-612. 10.1093/nar/gkl315, 1538804, 16845082.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
60
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
|