메뉴 건너뛰기




Volumn , Issue , 2003, Pages 436-445

Frequent-subsequence-based prediction of outer membrane proteins

Author keywords

Association rule; Classification; Outer membrane protein; Subcellular localization; Support vector machine

Indexed keywords

BACTERIAL CELLS; BACTERIAL PROTEIN; BIOLOGICAL DOMAIN; BIOLOGICAL EXPERIMENTS; BIOLOGICAL INSIGHT; CLASSIFICATION; CLASSIFICATION ALGORITHM; DRUG DESIGN; FREQUENT PATTERNS; GENOME SEQUENCING; GRAM-NEGATIVE BACTERIA; OUTER MEMBRANE PROTEIN; PROTEIN LOCALIZATION; STATE-OF-THE-ART METHODS;

EID: 77952344775     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/956750.956800     Document Type: Conference Paper
Times cited : (72)

References (28)
  • 1
    • 0013114804 scopus 로고    scopus 로고
    • Partial classification using association rules
    • Ali K., Manganaris S. and Srikant R., Partial classification using association rules, KDD'97, p115-118, 1997.
    • (1997) KDD'97 , pp. 115-118
    • Ali, K.1    Manganaris, S.2    Srikant, R.3
  • 3
    • 13944262633 scopus 로고    scopus 로고
    • Evaluation of techniques for classifying biological sequences
    • Deshpande M. and Karypis G., Evaluation of Techniques for Classifying Biological Sequences, PAKDD'02, 2002.
    • (2002) PAKDD'02
    • Deshpande, M.1    Karypis, G.2
  • 4
    • 0031791382 scopus 로고    scopus 로고
    • Prediction by a neural network of outer membrane β-strand topology
    • Diederichs K., Freigang J., Umhau S., Zeth K. and Breed J., Prediction by a neural network of outer membrane β-strand topology, Protein Science, 7, p2413-2420, 1998.
    • (1998) Protein Science , vol.7 , pp. 2413-2420
    • Diederichs, K.1    Freigang, J.2    Umhau, S.3    Zeth, K.4    Breed, J.5
  • 5
    • 0031887946 scopus 로고    scopus 로고
    • Wanted: Subcellular localization of proteins based on sequences
    • Eisenhaber F. and Bork P., Wanted: subcellular localization of proteins based on sequences, Trends in Cell Biology, 8, p169-170, 1998.
    • (1998) Trends in Cell. Biology , vol.8 , pp. 169-170
    • Eisenhaber, F.1    Bork, P.2
  • 6
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • Hua S. and Sun Z., Support vector machine approach for protein subcellular localization prediction, Bioinformatics, 17 (8), p721-728, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 721-728
    • Hua, S.1    Sun, Z.2
  • 7
    • 85006627991 scopus 로고
    • Color set size problem with applications to string matching
    • Springer-Verlag
    • Hui L., Color Set Size Problem with Applications to String Matching, Combinatorial String Matching, Lecture Notes in Computer Science, 644, p230-243, Springer-Verlag, 1992.
    • (1992) Combinatorial String Matching, Lecture Notes in Computer Science , vol.644 , pp. 230-243
    • Hui, L.1
  • 8
    • 0035078840 scopus 로고    scopus 로고
    • Prediction of the transmembrane regions of β-barrel membrane proteins with a neural network-based predictor
    • Jacoboni I., Martelli P., Fariselli P., De Pinto V. and Casadio R., Prediction of the transmembrane regions of β-barrel membrane proteins with a neural network-based predictor, Protein Science, 10, p779-787, 2001.
    • (2001) Protein Science , vol.10 , pp. 779-787
    • Jacoboni, I.1    Martelli, P.2    Fariselli, P.3    De Pinto, V.4    Casadio, R.5
  • 10
    • 0001421462 scopus 로고
    • Fast parallel and serial approximate string matching
    • Landau G. and Vishkin U., Fast Parallel and Serial Approximate String Matching, Journal of Algorithms, 10 (2):157-169, 1989.
    • (1989) Journal of Algorithms , vol.10 , Issue.2 , pp. 157-169
    • Landau, G.1    Vishkin, U.2
  • 13
    • 84948104699 scopus 로고    scopus 로고
    • Integrating classification and association rule mining
    • New York, NY
    • Liu B., Hsu W. and Ma Y., Integrating classification and association rule mining, KDD'98, New York, NY, 1998.
    • (1998) KDD'98
    • Liu, B.1    Hsu, W.2    Ma, Y.3
  • 14
    • 4243671284 scopus 로고    scopus 로고
    • A sequence-profile-based HMM for predicting and discrimating β barrel membrane proteins
    • 2002
    • Martelli P., Fariselli P., Krogh A. and Casadio R., A sequence-profile-based HMM for predicting and discrimating β barrel membrane proteins, Bioinformatics, 18 (1) 2002, S46-S53, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.1
    • Martelli, P.1    Fariselli, P.2    Krogh, A.3    Casadio, R.4
  • 15
    • 0028239038 scopus 로고
    • Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
    • Nakashima H. and Nishikawa K., Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies, Journal of Molecular Biology, 238, p54-61, 1994.
    • (1994) Journal of Molecular Biology , vol.238 , pp. 54-61
    • Nakashima, H.1    Nishikawa, K.2
  • 17
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt A. and Hubbard T., Using neural networks for prediction of the subcellular location of proteins, Nucleic Acids Research, 26 (9), p2230-2236, 1998.
    • (1998) Nucleic Acids Research , vol.26 , Issue.9 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 18
    • 77952409348 scopus 로고    scopus 로고
    • Rulequest Research, Information on See5/C5.0, at
    • Rulequest Research, Information on See5/C5.0, at http://www.rulequest. com/see5-info.html
  • 19
    • 0027161268 scopus 로고
    • Prediction of membrane-spanning β-strands and its application to maltoporin
    • Schirmer T. and Cowan S., Prediction of membrane-spanning β-strands and its application to maltoporin, Protein Science, 2, p1361-1363, 1993.
    • (1993) Protein Science , vol.2 , pp. 1361-1363
    • Schirmer, T.1    Cowan, S.2
  • 20
    • 0033932639 scopus 로고    scopus 로고
    • Barrel membrane proteins
    • Schulz G., β-barrel membrane proteins, Curr. Opin. Struct. Biology, 10, p443-447, 2000.
    • (2000) Curr. Opin. Struct. Biology , vol.10 , pp. 443-447
    • Schulz, G.1
  • 22
    • 0036366691 scopus 로고    scopus 로고
    • Support vector machine prediction of signal peptide cleavage site using a new class of kernels for strings
    • Vert J.-P., Support vector machine prediction of signal peptide cleavage site using a new class of kernels for strings, Proceedings of the Pacific Symposium on Biocomputing, p649-660, 2002.
    • (2002) Proceedings of the Pacific Symposium on Biocomputing , pp. 649-660
    • Vert, J.-P.1
  • 24
    • 0034592911 scopus 로고    scopus 로고
    • Growing decision tree on support-less association rules
    • Boston, MA, USA
    • Wang K., Zhou S. and He Y., Growing Decision Tree on Support-less Association Rules, KDD'00, Boston, MA, USA, 2000.
    • (2000) KDD'00
    • Wang, K.1    Zhou, S.2    He, Y.3
  • 25
    • 0036147641 scopus 로고    scopus 로고
    • Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures
    • Wimley W., Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures, Protein Science, 11, p301-312, 2002.
    • (2002) Protein Science , vol.11 , pp. 301-312
    • Wimley, W.1
  • 26
    • 84937539670 scopus 로고    scopus 로고
    • A tale of two classifiers: SNoW vs. SVM in visual recognition
    • Yang M.-H., Roth D. and Ahuja N.: A Tale of Two Classifiers: SNoW vs. SVM in Visual Recognition. ECCV (4):685-699, 2002
    • (2002) ECCV , Issue.4 , pp. 685-699
    • Yang, M.-H.1    Roth, D.2    Ahuja, N.3
  • 27
    • 0032938624 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations using Markov chain models
    • Yuan Z., Prediction of protein subcellular locations using Markov chain models, FEBS Lett., 451, p23-26, 1999.
    • (1999) FEBS Lett. , vol.451 , pp. 23-26
    • Yuan, Z.1
  • 28
    • 0036708003 scopus 로고    scopus 로고
    • The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes
    • Zhai Y. and Saier M., The β-barrel finder (BBF) program, allowing identification of outer membrane β-barrel proteins encoded within prokaryotic genomes, Protein Science, 11, p2196-2207, 2002.
    • (2002) Protein Science , vol.11 , pp. 2196-2207
    • Zhai, Y.1    Saier, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.