A colorimetric strategy based on a water-soluble conjugated polymer for sensing pH-driven conformational conversion of DNA i-motif structure

Biosensors and Bioelectronics

Volumn 25, Issue 7, 2010, Pages 1838-1842

  Wang, Lihua ^a   Liu, Xingfen ^b   Yang, Qing ^a   Fan, Quli ^b   Song, Shiping ^a   Fan, Chunhai ^a   Huang, Wei ^b  

^a SHANGHAI INSTITUTE OF APPLIED PHYSICS   (China)

^b NANJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

Colorimetric biosensor; Conformational conversion; DNA i motif structure; Water soluble conjugated polymer

Indexed keywords

COLOR; COLORIMETRY; DNA;

COLORIMETRIC BIOSENSORS; COLORIMETRIC DETECTION; CONFORMATIONAL CONVERSION; DNA I MOTIFS; SENSING CONFIGURATION; SENSING PROBE; SINGLE STRAND DNA; WATER-SOLUBLE CONJUGATED POLYMERS;

CONJUGATED POLYMERS;

POLYMER; POLYTHIOPHENE; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; DNA; WATER;

ARTICLE; BIOSENSOR; COLORIMETRY; CONFORMATIONAL TRANSITION; DNA PROBE; DNA SEQUENCE; DNA STRUCTURE; I MOTIF; LIMIT OF DETECTION; PH; SOLUBILITY; CHEMISTRY; CONFORMATION; METHODOLOGY; ULTRASTRUCTURE;

COLORIMETRY; DNA; HYDROGEN-ION CONCENTRATION; NUCLEIC ACID CONFORMATION; POLYMERS; SOLUBILITY; WATER;

EID: 77952301800     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2009.12.016     Document Type: Article

References (37)

1. Ahmed, S., Kintanar, A., Henderson, E., 1994. Nat. Struct. Biol. 1 (2), 83-88.
2. Benevides, J.M., Kang, C., Thomas Jr., G.J., 1996. Biochemistry 35 (18), 5747-5755.
3. Chen, L., McBranch, D.W., Wang, H.L., Helgeson, R., Wudl, F., Whitten, D.G., 1999. Proc. Natl. Acad. Sci. U.S.A. 96 (22), 12287-12292.
4. Datta, B., Armitage, B.A., 2001. J. Am. Chem. Soc. 123, 9612-9619.
5. Deng, H., Braunlin, W.H., 1995. Biopolymers 35, 677-681.
6. Dore, K., Dubus, S., Ho, H.A., Levesque, I., Brunette, M., Corbeil, G., Boissinot, M., Boivin, G., Bergeron, M.G., Boudreau, D., Leclerc, M., 2004. J. Am. Chem. Soc. 126 (13), 4240.
7. Fan, C., Plaxco, K.W., Heeger, A.J., 2005. Trends Biotechnol. 23 (4), 186.
8. Fan, C., Plaxco, K.W., Heeger, A.J., 2002. J. Am. Chem. Soc. 124 (20), 5642.
9. Fan, C.H., Wang, S., Hong, J.W., Bazan, G.C., Plaxco, K.W., Heeger, A.J., 2003. Proc. Natl. Acad. Sci. U.S.A. 100 (11), 6297.
10. Gaylord, B.S., Heeger, A.J., Bazan, G.C., 2002. Proc. Natl. Acad. Sci. U.S.A. 99 (17), 10954.
11. Gaylord, B.S., Massie, M.R., Feinstein, S.C., Bazan, G.C., 2005. Proc. Natl. Acad. Sci. U.S.A. 102 (1), 34.
12. Gehring, K., Leroy, J.L., Gueǐron, M., 1993. Nature 363, 561-565.
13. Gueron, M., Leroy, J.L., 2000. Curr. Opin. Struct. Biol. 10 (3), 326-331.
14. Hardin, C.C., Watson, T., Corregan, M., Bailey, C., 1992. Biochemistry 31, 833-841.
15. He, F., Tang, Y., Wang, S., Li, Y., Zhu, D., 2005. J. Am. Chem. Soc. 127 (35), 12343.
16. Ho, H.-A., Boissinot, M., Bergeron, M.G., Corbeil, G.V., Dore, K., Boudreau, D., Leclerc, M., 2002. Angew. Chem. Int. Ed. 41, 1548-1551.
17. Ho, H.A., Leclerc, M., 2003. J. Am. Chem. Soc. 125 (15), 4412-4413.
18. Ho, H.A., Leclerc, M., 2004. J. Am. Chem. Soc. 126 (5), 1384-1387.
19. Ho, H.A., Najari, A., Leclerc, M., 2008. Acc. Chem. Res. 41 (2), 168-178.
20. Li, X., Peng, Y., Ren, J., Qu, X., 2006. Proc. Natl. Acad. Sci. U.S.A. 103 (52), 19658-19663.
21. Liu, H., Xu, Y., Li, F., Yang, Y., Wang, W., Song, Y., Liu, D., 2007a. Angew. Chem. Int. Ed. Engl. 46 (14), 2515-2517.
22. Liu, X., Tang, Y., Wang, L., Zhang, J., Song, S., Fan, C., Wang, S., 2007b. Adv. Mater. 19, 1471-1474.
23. Manzini, G., Yathindra, N., Xodo, L.E., 1994. Nucl. Acids Res. 22 (22), 4634-4640.
24. McQuade, D.T., Pullen, A.E., Swager, T.M., 2000. Chem. Rev. 100 (7), 2537-2574.
25. Mergny, J.-L., 1999. Biochemistry 38, 1573-1581.
26. Miura, T., Thomas, G.J., 1994. Biochemistry 33, 7848-7856.
27. Phan, A.T., Gueron, M., Leroy, J.L., 2001. Methods Enzymol. 338, 341-371.
28. Phan, A.T., Mergny, J.-L., 2002. Nucl. Acids Res. 30, 4618-4625.
29. Rangan, A., Fedoroff, O.Y., Hurley, L.H., 2001. J. Biol. Chem. 276, 4640-4646.
30. Salazar, M., Thompson, B.D., Kerwin, S.M., Hurley, L.H., 1996. Biochemistry 35, 16110-16115.
31. Seela, F., Budow, S., 2006. Helv. Chim. Acta 89 (9), 1978-1985.
32. Sharma, J., Chhabra, R., Yan, H., Liu, Y., 2007. Chem. Commun. 5, 477-479.
33. Shu, W., Liu, D., Watari, M., Riener, C.K., Strunz, T., Welland, M.E., Balasubramanian, S., McKendry, R.A., 2005. J. Am. Chem. Soc. 127 (48), 17054-17060.
34. Tang, Y.L., Feng, F.D., He, F., Wang, S., Li, Y.L., Zhu, D.B., 2006. J. Am. Chem. Soc. 128 (46), 14972-14976.
35. Thomas 3rd, S.W., Joly, G.D., Swager, T.M., 2007. Chem. Rev. 107 (4), 1339-1386.
36. Xu, H., Wu, H., Huang, F., Song, S., Li, W., Cao, Y., Fan, C., 2005. Nucleic Acids Res. 33 (9), e83.
37. Xu, Y., Sugiyama, H., 2006. Nucleic Acids Res. 34 (3), 949-954.