메뉴 건너뛰기




Volumn 10, Issue , 2010, Pages

The structure of a reduced form of OxyR from Neisseria meningitidis

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE DERIVATIVE; DIMER; TETRAMER; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR OXYR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; CYSTEINE; DNA; REPRESSOR PROTEIN;

EID: 77952180202     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-10-10     Document Type: Article
Times cited : (21)

References (35)
  • 2
    • 0035815274 scopus 로고    scopus 로고
    • Structural basis of the redox switch in the OxyR transcription factor
    • 10.1016/S0092-8674(01)00300-2. 11301006
    • Structural basis of the redox switch in the OxyR transcription factor. H Choi S Kim P Mukhopadhyay S Cho J Woo G Storz S Ryu, Cell 2001 105 103 113 10.1016/S0092-8674(01)00300-2 11301006
    • (2001) Cell , vol.105 , pp. 103-113
    • Choi, H.1    Kim, S.2    Mukhopadhyay, P.3    Cho, S.4    Woo, J.5    Storz, G.6    Ryu, S.7
  • 3
    • 0342333739 scopus 로고
    • OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins
    • 10.1073/pnas.86.10.3484. 2471187
    • OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins. MF Christman G Storz BN Ames, Proc Natl Acad Sci USA 1989 86 3484 3488 10.1073/pnas.86.10.3484 2471187
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 3484-3488
    • Christman, M.F.1    Storz, G.2    Ames, B.N.3
  • 4
    • 0034932337 scopus 로고    scopus 로고
    • DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
    • 10.1128/JB.183.15.4562-4570.2001. 11443091
    • DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. M Zheng X Wang LJ Templeton DR Smulski RA LaRossa G Storz, J Bacteriol 2001 183 4562 4570 10.1128/JB.183.15.4562-4570.2001 11443091
    • (2001) J Bacteriol , vol.183 , pp. 4562-4570
    • Zheng, M.1    Wang, X.2    Templeton, L.J.3    Smulski, D.R.4    Larossa, R.A.5    Storz, G.6
  • 6
    • 65649152967 scopus 로고    scopus 로고
    • Differential roles of OxyR-controlled antioxidant enzymes alkyl hydroperoxide reductase (AhpCF) and catalase (KatB) in the protection of Pseudomonas aeruginosa against hydrogen peroxide in biofilm vs. planktonic culture
    • 10.1111/j.1574-6968.2009.01605.x. 19456869
    • Differential roles of OxyR-controlled antioxidant enzymes alkyl hydroperoxide reductase (AhpCF) and catalase (KatB) in the protection of Pseudomonas aeruginosa against hydrogen peroxide in biofilm vs. planktonic culture. W Panmanee DJ Hassett, FEMS microbiology letters 2009 295 238 244 10.1111/j.1574-6968.2009.01605.x 19456869
    • (2009) FEMS Microbiology Letters , vol.295 , pp. 238-244
    • Panmanee, W.1    Hassett, D.J.2
  • 7
    • 67650744786 scopus 로고    scopus 로고
    • The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation
    • 10.1099/mic.0.027920-0. 19389765
    • The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation. K Honma E Mishima S Inagaki A Sharma, Microbiology 2009 155 1912 1922 10.1099/mic.0.027920-0 19389765
    • (2009) Microbiology , vol.155 , pp. 1912-1922
    • Honma, K.1    Mishima, E.2    Inagaki, S.3    Sharma, A.4
  • 9
    • 16544369973 scopus 로고    scopus 로고
    • Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path
    • 10.1038/nsmb856. 15543158
    • Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path. C Lee SM Lee P Mukhopadhyay SJ Kim SC Lee WS Ahn MH Yu G Storz SE Ryu, Nat Struct Mol Biol 2004 11 1179 1185 10.1038/nsmb856 15543158
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 1179-1185
    • Lee, C.1    Lee, S.M.2    Mukhopadhyay, P.3    Kim, S.J.4    Lee, S.C.5    Ahn, W.S.6    Yu, M.H.7    Storz, G.8    Ryu, S.E.9
  • 10
    • 0028930138 scopus 로고
    • Mutational analysis of the redox-sensitive transcriptional regulator OxyR: Regions important for DNA binding and multimerization
    • 7868603
    • Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for DNA binding and multimerization. I Kullik J Stevens MB Toledano G Storz, J Bacteriol 1995 177 1285 1291 7868603
    • (1995) J Bacteriol , vol.177 , pp. 1285-1291
    • Kullik, I.1    Stevens, J.2    Toledano, M.B.3    Storz, G.4
  • 11
    • 0037336620 scopus 로고    scopus 로고
    • The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer
    • 10.1093/nar/gkg234. 12595552
    • The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer. J Zaim AM Kierzek, Nucleic Acids Res 2003 31 1444 1454 10.1093/nar/gkg234 12595552
    • (2003) Nucleic Acids Res , vol.31 , pp. 1444-1454
    • Zaim, J.1    Kierzek, A.M.2
  • 12
    • 55349123270 scopus 로고    scopus 로고
    • OxyR tightly regulates catalase expression in Neisseria meningitidis through both repression and activation mechanisms
    • 10.1111/j.1365-2958.2008.06468.x. 18990187
    • OxyR tightly regulates catalase expression in Neisseria meningitidis through both repression and activation mechanisms. R Ieva D Roncarati MM Metruccio KL Seib V Scarlato I Delany, Mol Microbiol 2008 70 1152 1165 10.1111/j.1365-2958.2008.06468.x 18990187
    • (2008) Mol Microbiol , vol.70 , pp. 1152-1165
    • Ieva, R.1    Roncarati, D.2    Metruccio, M.M.3    Seib, K.L.4    Scarlato, V.5    Delany, I.6
  • 13
    • 0031571642 scopus 로고    scopus 로고
    • The structure of the cofactor-binding fragment of the LysR family member, CysB: A familiar fold with a surprising subunit arrangement
    • 10.1016/S0969-2126(97)00254-2. 9309218
    • The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement. R Tyrrell KH Verschueren EJ Dodson GN Murshudov C Addy AJ Wilkinson, Structure 1997 5 1017 1032 10.1016/S0969-2126(97)00254-2 9309218
    • (1997) Structure , vol.5 , pp. 1017-1032
    • Tyrrell, R.1    Verschueren, K.H.2    Dodson, E.J.3    Murshudov, G.N.4    Addy, C.5    Wilkinson, A.J.6
  • 14
    • 0028023175 scopus 로고
    • Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: A mechanism for differential promoter selection
    • 10.1016/S0092-8674(94)90702-1. 8087856
    • Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection. MB Toledano I Kullik F Trinh PT Baird TD Schneider G Storz, Cell 1994 78 897 909 10.1016/S0092-8674(94) 90702-1 8087856
    • (1994) Cell , vol.78 , pp. 897-909
    • Toledano, M.B.1    Kullik, I.2    Trinh, F.3    Baird, P.T.4    Schneider, T.D.5    Storz, G.6
  • 15
    • 2942741120 scopus 로고    scopus 로고
    • Development of a bacterial biosensor for nitrotoluenes: The crystal structure of the transcriptional regulator DntR
    • 10.1016/j.jmb.2004.04.071. 15210343
    • Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR. IA Smirnova C Dian GA Leonard S McSweeney D Birse P Brzezinski, J Mol Biol 2004 340 405 418 10.1016/j.jmb.2004.04.071 15210343
    • (2004) J Mol Biol , vol.340 , pp. 405-418
    • Smirnova, I.A.1    Dian, C.2    Leonard, G.A.3    McSweeney, S.4    Birse, D.5    Brzezinski, P.6
  • 16
    • 0037155206 scopus 로고    scopus 로고
    • Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors
    • 10.1074/jbc.M110555200. 11717314
    • Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors. R Akakura SC Winans, J Biol Chem 2002 277 5866 5874 10.1074/jbc.M110555200 11717314
    • (2002) J Biol Chem , vol.277 , pp. 5866-5874
    • Akakura, R.1    Winans, S.C.2
  • 17
    • 0028247111 scopus 로고
    • Stoichiometry of binding of CysB to the cysJIH, cysK, and cysP promoter regions of Salmonella typhimurium
    • 8206845
    • Stoichiometry of binding of CysB to the cysJIH, cysK, and cysP promoter regions of Salmonella typhimurium. MM Hryniewicz NM Kredich, J Bacteriol 1994 176 3673 3682 8206845
    • (1994) J Bacteriol , vol.176 , pp. 3673-3682
    • Hryniewicz, M.M.1    Kredich, N.M.2
  • 19
    • 0344406163 scopus 로고    scopus 로고
    • Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: Unusual combination of two subunit forms and molecular bases for causing and changing DNA bend
    • 10.1016/S0022-2836(03)00312-7. 12706716
    • Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. S Muraoka R Okumura N Ogawa T Nonaka K Miyashita T Senda, J Mol Biol 2003 328 555 566 10.1016/S0022-2836(03)00312-7 12706716
    • (2003) J Mol Biol , vol.328 , pp. 555-566
    • Muraoka, S.1    Okumura, R.2    Ogawa, N.3    Nonaka, T.4    Miyashita, K.5    Senda, T.6
  • 20
    • 0141492988 scopus 로고    scopus 로고
    • Thiol-based regulatory switches
    • 10.1146/annurev.genet.37.110801.142538. 14616057
    • Thiol-based regulatory switches. MS Paget MJ Buttner, Annu Rev Genet 2003 37 91 121 10.1146/annurev.genet.37.110801.142538 14616057
    • (2003) Annu Rev Genet , vol.37 , pp. 91-121
    • Paget, M.S.1    Buttner, M.J.2
  • 21
    • 45449113598 scopus 로고    scopus 로고
    • A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans
    • 10.1371/journal.pone.0001602. 18270589
    • A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans. H Chen G Xu Y Zhao B Tian H Lu X Yu Z Xu N Ying S Hu Y Hua, PLoS ONE 2008 3 1602 10.1371/journal.pone.0001602 18270589
    • (2008) PLoS ONE , vol.3 , pp. 51602
    • Chen, H.1    Xu, G.2    Zhao, Y.3    Tian, B.4    Lu, H.5    Yu, X.6    Xu, Z.7    Ying, N.8    Hu, S.9    Hua, Y.10
  • 23
    • 51149112727 scopus 로고    scopus 로고
    • Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58
    • 10.1107/S1744309108024068. 18765907
    • Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58. S Sainsbury J Ren NJ Saunders DI Stuart RJ Owens, Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 64 797 801 10.1107/S1744309108024068 18765907
    • (2008) Acta Crystallogr Sect F Struct Biol Cryst Commun , vol.64 , pp. 797-801
    • Sainsbury, S.1    Ren, J.2    Saunders, N.J.3    Stuart, D.I.4    Owens, R.J.5
  • 24
    • 43049095602 scopus 로고    scopus 로고
    • Methods for protein characterization by mass spectrometry, thermal shift (ThermoFluor) assay, and multiangle or static light scattering
    • Humana Press Kobe B, Guss M, Huber T
    • Methods for protein characterization by mass spectrometry, thermal shift (ThermoFluor) assay, and multiangle or static light scattering. JE Nettleship J Brown MR Groves A Geerlof, Structural Proteomics: High-throughput Methods Humana Press, Kobe B, Guss M, Huber T, 2008 426 299 318
    • (2008) Structural Proteomics: High-throughput Methods , vol.426 , pp. 299-318
    • Nettleship, J.E.1    Brown, J.2    Groves, M.R.3    Geerlof, A.4
  • 25
    • 0037391746 scopus 로고    scopus 로고
    • A procedure for setting up high-throughput nanolitre crystallization experiments. I. Protocol design and validation
    • 10.1107/S0021889803001997
    • A procedure for setting up high-throughput nanolitre crystallization experiments. I. Protocol design and validation. TS Walter J Diprose J Brown M Pickford RJ Owens DI Stuart K Harlos, Journal of Applied Crystallography 2003 36 308 314 10.1107/S0021889803001997
    • (2003) Journal of Applied Crystallography , vol.36 , pp. 308-314
    • Walter, T.S.1    Diprose, J.2    Brown, J.3    Pickford, M.4    Owens, R.J.5    Stuart, D.I.6    Harlos, K.7
  • 26
    • 23844515485 scopus 로고    scopus 로고
    • A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization
    • 10.1107/S0907444905007808. 15930615
    • A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization. TS Walter JM Diprose CJ Mayo C Siebold MG Pickford L Carter GC Sutton NS Berrow J Brown IM Berry,, et al. Acta Crystallogr D Biol Crystallogr 2005 61 651 657 10.1107/S0907444905007808 15930615
    • (2005) Acta Crystallogr D Biol Crystallogr , vol.61 , pp. 651-657
    • Walter, T.S.1    Diprose, J.M.2    Mayo, C.J.3    Siebold, C.4    Pickford, M.G.5    Carter, L.6    Sutton, G.C.7    Berrow, N.S.8    Brown, J.9    Berry, I.M.10
  • 27
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • full-text
    • Processing of X-ray diffraction data collected in oscillation mode. Z Otinowski W Minor, Methods Enzymology 1997 276 307 326 full-text
    • (1997) Methods Enzymology , vol.276 , pp. 307-326
    • Otinowski, Z.1    Minor, W.2
  • 28
    • 37549039510 scopus 로고    scopus 로고
    • A short history of SHELX
    • 10.1107/S0108767307043930. 18156677
    • A short history of SHELX. GM Sheldrick, Acta Crystallogr A 2008 64 112 122 10.1107/S0108767307043930 18156677
    • (2008) Acta Crystallogr A , vol.64 , pp. 112-122
    • Sheldrick, G.M.1
  • 29
    • 2142689200 scopus 로고    scopus 로고
    • SOLVE and RESOLVE: Automated structure solution, density modification and model building
    • 10.1107/S0909049503023938. 14646132
    • SOLVE and RESOLVE: automated structure solution, density modification and model building. T Terwilliger, J Synchrotron Radiat 2004 11 49 52 10.1107/S0909049503023938 14646132
    • (2004) J Synchrotron Radiat , vol.11 , pp. 49-52
    • Terwilliger, T.1
  • 32
    • 0018792428 scopus 로고
    • Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A
    • 10.1016/0022-2836(79)90416-9. 537059
    • Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A. DI Stuart M Levine H Muirhead DK Stammers, J Mol Biol 1979 134 109 142 10.1016/0022-2836(79)90416-9 537059
    • (1979) J Mol Biol , vol.134 , pp. 109-142
    • Stuart, D.I.1    Levine, M.2    Muirhead, H.3    Stammers, D.K.4
  • 35
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • 10.1093/bioinformatics/15.4.305. 10320398
    • ESPript: analysis of multiple sequence alignments in PostScript. P Gouet E Courcelle DI Stuart F Metoz, Bioinformatics 1999 15 305 308 10.1093/bioinformatics/15.4.305 10320398
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.