-
2
-
-
0035815274
-
Structural basis of the redox switch in the OxyR transcription factor
-
10.1016/S0092-8674(01)00300-2. 11301006
-
Structural basis of the redox switch in the OxyR transcription factor. H Choi S Kim P Mukhopadhyay S Cho J Woo G Storz S Ryu, Cell 2001 105 103 113 10.1016/S0092-8674(01)00300-2 11301006
-
(2001)
Cell
, vol.105
, pp. 103-113
-
-
Choi, H.1
Kim, S.2
Mukhopadhyay, P.3
Cho, S.4
Woo, J.5
Storz, G.6
Ryu, S.7
-
3
-
-
0342333739
-
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins
-
10.1073/pnas.86.10.3484. 2471187
-
OxyR, a positive regulator of hydrogen peroxide-inducible genes in Escherichia coli and Salmonella typhimurium, is homologous to a family of bacterial regulatory proteins. MF Christman G Storz BN Ames, Proc Natl Acad Sci USA 1989 86 3484 3488 10.1073/pnas.86.10.3484 2471187
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 3484-3488
-
-
Christman, M.F.1
Storz, G.2
Ames, B.N.3
-
4
-
-
0034932337
-
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
-
10.1128/JB.183.15.4562-4570.2001. 11443091
-
DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. M Zheng X Wang LJ Templeton DR Smulski RA LaRossa G Storz, J Bacteriol 2001 183 4562 4570 10.1128/JB.183.15.4562-4570.2001 11443091
-
(2001)
J Bacteriol
, vol.183
, pp. 4562-4570
-
-
Zheng, M.1
Wang, X.2
Templeton, L.J.3
Smulski, D.R.4
Larossa, R.A.5
Storz, G.6
-
5
-
-
33845706489
-
Characterization of the OxyR regulon of Neisseria gonorrhoeae
-
10.1111/j.1365-2958.2006.05478.x. 17140413
-
Characterization of the OxyR regulon of Neisseria gonorrhoeae. KL Seib HJ Wu YN Srikhanta JL Edwards ML Falsetta AJ Hamilton TL Maguire SM Grimmond MA Apicella AG McEwan,, et al. Mol Microbiol 2007 63 54 68 10.1111/j.1365-2958. 2006.05478.x 17140413
-
(2007)
Mol Microbiol
, vol.63
, pp. 54-68
-
-
Seib, K.L.1
Wu, H.J.2
Srikhanta, Y.N.3
Edwards, J.L.4
Falsetta, M.L.5
Hamilton, A.J.6
Maguire, T.L.7
Grimmond, S.M.8
Apicella, M.A.9
McEwan, A.G.10
-
6
-
-
65649152967
-
Differential roles of OxyR-controlled antioxidant enzymes alkyl hydroperoxide reductase (AhpCF) and catalase (KatB) in the protection of Pseudomonas aeruginosa against hydrogen peroxide in biofilm vs. planktonic culture
-
10.1111/j.1574-6968.2009.01605.x. 19456869
-
Differential roles of OxyR-controlled antioxidant enzymes alkyl hydroperoxide reductase (AhpCF) and catalase (KatB) in the protection of Pseudomonas aeruginosa against hydrogen peroxide in biofilm vs. planktonic culture. W Panmanee DJ Hassett, FEMS microbiology letters 2009 295 238 244 10.1111/j.1574-6968.2009.01605.x 19456869
-
(2009)
FEMS Microbiology Letters
, vol.295
, pp. 238-244
-
-
Panmanee, W.1
Hassett, D.J.2
-
7
-
-
67650744786
-
The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation
-
10.1099/mic.0.027920-0. 19389765
-
The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation. K Honma E Mishima S Inagaki A Sharma, Microbiology 2009 155 1912 1922 10.1099/mic.0.027920-0 19389765
-
(2009)
Microbiology
, vol.155
, pp. 1912-1922
-
-
Honma, K.1
Mishima, E.2
Inagaki, S.3
Sharma, A.4
-
8
-
-
0037013155
-
OxyR: A molecular code for redox-related signaling
-
10.1016/S0092-8674(02)00723-7. 12015987
-
OxyR: a molecular code for redox-related signaling. SO Kim K Merchant R Nudelman WF Beyer Jr T Keng J DeAngelo A Hausladen JS Stamler, Cell 2002 109 383 396 10.1016/S0092-8674(02)00723-7 12015987
-
(2002)
Cell
, vol.109
, pp. 383-396
-
-
Kim, S.O.1
Merchant, K.2
Nudelman, R.3
Beyer Jr., W.F.4
Keng, T.5
Deangelo, J.6
Hausladen, A.7
Stamler, J.S.8
-
9
-
-
16544369973
-
Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path
-
10.1038/nsmb856. 15543158
-
Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path. C Lee SM Lee P Mukhopadhyay SJ Kim SC Lee WS Ahn MH Yu G Storz SE Ryu, Nat Struct Mol Biol 2004 11 1179 1185 10.1038/nsmb856 15543158
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1179-1185
-
-
Lee, C.1
Lee, S.M.2
Mukhopadhyay, P.3
Kim, S.J.4
Lee, S.C.5
Ahn, W.S.6
Yu, M.H.7
Storz, G.8
Ryu, S.E.9
-
10
-
-
0028930138
-
Mutational analysis of the redox-sensitive transcriptional regulator OxyR: Regions important for DNA binding and multimerization
-
7868603
-
Mutational analysis of the redox-sensitive transcriptional regulator OxyR: regions important for DNA binding and multimerization. I Kullik J Stevens MB Toledano G Storz, J Bacteriol 1995 177 1285 1291 7868603
-
(1995)
J Bacteriol
, vol.177
, pp. 1285-1291
-
-
Kullik, I.1
Stevens, J.2
Toledano, M.B.3
Storz, G.4
-
11
-
-
0037336620
-
The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer
-
10.1093/nar/gkg234. 12595552
-
The structure of full-length LysR-type transcriptional regulators. Modeling of the full-length OxyR transcription factor dimer. J Zaim AM Kierzek, Nucleic Acids Res 2003 31 1444 1454 10.1093/nar/gkg234 12595552
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1444-1454
-
-
Zaim, J.1
Kierzek, A.M.2
-
12
-
-
55349123270
-
OxyR tightly regulates catalase expression in Neisseria meningitidis through both repression and activation mechanisms
-
10.1111/j.1365-2958.2008.06468.x. 18990187
-
OxyR tightly regulates catalase expression in Neisseria meningitidis through both repression and activation mechanisms. R Ieva D Roncarati MM Metruccio KL Seib V Scarlato I Delany, Mol Microbiol 2008 70 1152 1165 10.1111/j.1365-2958.2008.06468.x 18990187
-
(2008)
Mol Microbiol
, vol.70
, pp. 1152-1165
-
-
Ieva, R.1
Roncarati, D.2
Metruccio, M.M.3
Seib, K.L.4
Scarlato, V.5
Delany, I.6
-
13
-
-
0031571642
-
The structure of the cofactor-binding fragment of the LysR family member, CysB: A familiar fold with a surprising subunit arrangement
-
10.1016/S0969-2126(97)00254-2. 9309218
-
The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement. R Tyrrell KH Verschueren EJ Dodson GN Murshudov C Addy AJ Wilkinson, Structure 1997 5 1017 1032 10.1016/S0969-2126(97)00254-2 9309218
-
(1997)
Structure
, vol.5
, pp. 1017-1032
-
-
Tyrrell, R.1
Verschueren, K.H.2
Dodson, E.J.3
Murshudov, G.N.4
Addy, C.5
Wilkinson, A.J.6
-
14
-
-
0028023175
-
Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: A mechanism for differential promoter selection
-
10.1016/S0092-8674(94)90702-1. 8087856
-
Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection. MB Toledano I Kullik F Trinh PT Baird TD Schneider G Storz, Cell 1994 78 897 909 10.1016/S0092-8674(94) 90702-1 8087856
-
(1994)
Cell
, vol.78
, pp. 897-909
-
-
Toledano, M.B.1
Kullik, I.2
Trinh, F.3
Baird, P.T.4
Schneider, T.D.5
Storz, G.6
-
15
-
-
2942741120
-
Development of a bacterial biosensor for nitrotoluenes: The crystal structure of the transcriptional regulator DntR
-
10.1016/j.jmb.2004.04.071. 15210343
-
Development of a bacterial biosensor for nitrotoluenes: the crystal structure of the transcriptional regulator DntR. IA Smirnova C Dian GA Leonard S McSweeney D Birse P Brzezinski, J Mol Biol 2004 340 405 418 10.1016/j.jmb.2004.04.071 15210343
-
(2004)
J Mol Biol
, vol.340
, pp. 405-418
-
-
Smirnova, I.A.1
Dian, C.2
Leonard, G.A.3
McSweeney, S.4
Birse, D.5
Brzezinski, P.6
-
16
-
-
0037155206
-
Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors
-
10.1074/jbc.M110555200. 11717314
-
Constitutive mutations of the OccR regulatory protein affect DNA bending in response to metabolites released from plant tumors. R Akakura SC Winans, J Biol Chem 2002 277 5866 5874 10.1074/jbc.M110555200 11717314
-
(2002)
J Biol Chem
, vol.277
, pp. 5866-5874
-
-
Akakura, R.1
Winans, S.C.2
-
17
-
-
0028247111
-
Stoichiometry of binding of CysB to the cysJIH, cysK, and cysP promoter regions of Salmonella typhimurium
-
8206845
-
Stoichiometry of binding of CysB to the cysJIH, cysK, and cysP promoter regions of Salmonella typhimurium. MM Hryniewicz NM Kredich, J Bacteriol 1994 176 3673 3682 8206845
-
(1994)
J Bacteriol
, vol.176
, pp. 3673-3682
-
-
Hryniewicz, M.M.1
Kredich, N.M.2
-
19
-
-
0344406163
-
Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: Unusual combination of two subunit forms and molecular bases for causing and changing DNA bend
-
10.1016/S0022-2836(03)00312-7. 12706716
-
Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. S Muraoka R Okumura N Ogawa T Nonaka K Miyashita T Senda, J Mol Biol 2003 328 555 566 10.1016/S0022-2836(03)00312-7 12706716
-
(2003)
J Mol Biol
, vol.328
, pp. 555-566
-
-
Muraoka, S.1
Okumura, R.2
Ogawa, N.3
Nonaka, T.4
Miyashita, K.5
Senda, T.6
-
20
-
-
0141492988
-
Thiol-based regulatory switches
-
10.1146/annurev.genet.37.110801.142538. 14616057
-
Thiol-based regulatory switches. MS Paget MJ Buttner, Annu Rev Genet 2003 37 91 121 10.1146/annurev.genet.37.110801.142538 14616057
-
(2003)
Annu Rev Genet
, vol.37
, pp. 91-121
-
-
Paget, M.S.1
Buttner, M.J.2
-
21
-
-
45449113598
-
A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans
-
10.1371/journal.pone.0001602. 18270589
-
A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans. H Chen G Xu Y Zhao B Tian H Lu X Yu Z Xu N Ying S Hu Y Hua, PLoS ONE 2008 3 1602 10.1371/journal.pone.0001602 18270589
-
(2008)
PLoS ONE
, vol.3
, pp. 51602
-
-
Chen, H.1
Xu, G.2
Zhao, Y.3
Tian, B.4
Lu, H.5
Yu, X.6
Xu, Z.7
Ying, N.8
Hu, S.9
Hua, Y.10
-
22
-
-
34247846396
-
A versatile ligation-independent cloning method suitable for high-throughput expression screening applications
-
10.1093/nar/gkm047. 17317681
-
A versatile ligation-independent cloning method suitable for high-throughput expression screening applications. NS Berrow D Alderton S Sainsbury J Nettleship R Assenberg N Rahman DI Stuart RJ Owens, Nucleic Acids Res 2007 35 45 10.1093/nar/gkm047 17317681
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 545
-
-
Berrow, N.S.1
Alderton, D.2
Sainsbury, S.3
Nettleship, J.4
Assenberg, R.5
Rahman, N.6
Stuart, D.I.7
Owens, R.J.8
-
23
-
-
51149112727
-
Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58
-
10.1107/S1744309108024068. 18765907
-
Crystallization and preliminary X-ray analysis of CrgA, a LysR-type transcriptional regulator from pathogenic Neisseria meningitidis MC58. S Sainsbury J Ren NJ Saunders DI Stuart RJ Owens, Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 64 797 801 10.1107/S1744309108024068 18765907
-
(2008)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.64
, pp. 797-801
-
-
Sainsbury, S.1
Ren, J.2
Saunders, N.J.3
Stuart, D.I.4
Owens, R.J.5
-
24
-
-
43049095602
-
Methods for protein characterization by mass spectrometry, thermal shift (ThermoFluor) assay, and multiangle or static light scattering
-
Humana Press Kobe B, Guss M, Huber T
-
Methods for protein characterization by mass spectrometry, thermal shift (ThermoFluor) assay, and multiangle or static light scattering. JE Nettleship J Brown MR Groves A Geerlof, Structural Proteomics: High-throughput Methods Humana Press, Kobe B, Guss M, Huber T, 2008 426 299 318
-
(2008)
Structural Proteomics: High-throughput Methods
, vol.426
, pp. 299-318
-
-
Nettleship, J.E.1
Brown, J.2
Groves, M.R.3
Geerlof, A.4
-
25
-
-
0037391746
-
A procedure for setting up high-throughput nanolitre crystallization experiments. I. Protocol design and validation
-
10.1107/S0021889803001997
-
A procedure for setting up high-throughput nanolitre crystallization experiments. I. Protocol design and validation. TS Walter J Diprose J Brown M Pickford RJ Owens DI Stuart K Harlos, Journal of Applied Crystallography 2003 36 308 314 10.1107/S0021889803001997
-
(2003)
Journal of Applied Crystallography
, vol.36
, pp. 308-314
-
-
Walter, T.S.1
Diprose, J.2
Brown, J.3
Pickford, M.4
Owens, R.J.5
Stuart, D.I.6
Harlos, K.7
-
26
-
-
23844515485
-
A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization
-
10.1107/S0907444905007808. 15930615
-
A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization. TS Walter JM Diprose CJ Mayo C Siebold MG Pickford L Carter GC Sutton NS Berrow J Brown IM Berry,, et al. Acta Crystallogr D Biol Crystallogr 2005 61 651 657 10.1107/S0907444905007808 15930615
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, pp. 651-657
-
-
Walter, T.S.1
Diprose, J.M.2
Mayo, C.J.3
Siebold, C.4
Pickford, M.G.5
Carter, L.6
Sutton, G.C.7
Berrow, N.S.8
Brown, J.9
Berry, I.M.10
-
27
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
full-text
-
Processing of X-ray diffraction data collected in oscillation mode. Z Otinowski W Minor, Methods Enzymology 1997 276 307 326 full-text
-
(1997)
Methods Enzymology
, vol.276
, pp. 307-326
-
-
Otinowski, Z.1
Minor, W.2
-
28
-
-
37549039510
-
A short history of SHELX
-
10.1107/S0108767307043930. 18156677
-
A short history of SHELX. GM Sheldrick, Acta Crystallogr A 2008 64 112 122 10.1107/S0108767307043930 18156677
-
(2008)
Acta Crystallogr A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
29
-
-
2142689200
-
SOLVE and RESOLVE: Automated structure solution, density modification and model building
-
10.1107/S0909049503023938. 14646132
-
SOLVE and RESOLVE: automated structure solution, density modification and model building. T Terwilliger, J Synchrotron Radiat 2004 11 49 52 10.1107/S0909049503023938 14646132
-
(2004)
J Synchrotron Radiat
, vol.11
, pp. 49-52
-
-
Terwilliger, T.1
-
30
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Crystallography & NMR system: A new software suite for macromolecular structure determination. AT Brunger PD Adams GM Clore WL DeLano P Gros RW Grosse-Kunstleve JS Jiang J Kuszewski M Nilges NS Pannu,, et al. Acta crystallographica 1998 54 905 921
-
(1998)
Acta Crystallographica
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
31
-
-
49649085631
-
Automated structure solution with the PHENIX suite
-
full-text. 18542881
-
Automated structure solution with the PHENIX suite. PH Zwart PV Afonine RW Grosse-Kunstleve LW Hung TR Ioerger AJ McCoy E McKee NW Moriarty RJ Read JC Sacchettini,, et al. Methods Mol Biol 2008 426 419 435 full-text 18542881
-
(2008)
Methods Mol Biol
, vol.426
, pp. 419-435
-
-
Zwart, P.H.1
Afonine, P.V.2
Grosse-Kunstleve, R.W.3
Hung, L.W.4
Ioerger, T.R.5
McCoy, A.J.6
McKee, E.7
Moriarty, N.W.8
Read, R.J.9
Sacchettini, J.C.10
-
32
-
-
0018792428
-
Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A
-
10.1016/0022-2836(79)90416-9. 537059
-
Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A. DI Stuart M Levine H Muirhead DK Stammers, J Mol Biol 1979 134 109 142 10.1016/0022-2836(79)90416-9 537059
-
(1979)
J Mol Biol
, vol.134
, pp. 109-142
-
-
Stuart, D.I.1
Levine, M.2
Muirhead, H.3
Stammers, D.K.4
-
34
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
10.1093/nar/gkg500. 12824352
-
Multiple sequence alignment with the Clustal series of programs. R Chenna H Sugawara T Koike R Lopez TJ Gibson DG Higgins JD Thompson, Nucleic acids research 2003 31 3497 3500 10.1093/nar/gkg500 12824352
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
35
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
10.1093/bioinformatics/15.4.305. 10320398
-
ESPript: analysis of multiple sequence alignments in PostScript. P Gouet E Courcelle DI Stuart F Metoz, Bioinformatics 1999 15 305 308 10.1093/bioinformatics/15.4.305 10320398
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
|