-
1
-
-
0032776303
-
Molecular interaction map of the mammalian cell cycle control and dna repair systems
-
K. Kohn, "Molecular Interaction Map of the Mammalian Cell Cycle Control and DNA Repair Systems," Molecular Biology of the Cell, vol.10, no.8, pp. 2703-2734, 1999.
-
(1999)
Molecular Biology of the Cell
, vol.10
, Issue.8
, pp. 2703-2734
-
-
Kohn, K.1
-
2
-
-
0346245914
-
Modelling the controls of the eukaryotic cell cycle
-
B. Novak and J. Tyson, "Modelling the Controls of the Eukaryotic Cell Cycle," Biochemical Soc. Trans., vol.31, no.6, pp. 1526-1529, 2003.
-
(2003)
Biochemical Soc. Trans.
, vol.31
, Issue.6
, pp. 1526-1529
-
-
Novak, B.1
Tyson, J.2
-
3
-
-
33845605130
-
Mathematical modeling as a tool for investigating cell cycle control networks
-
J. Sible and J. Tyson, "Mathematical Modeling as a Tool for Investigating Cell Cycle Control Networks," Methods, vol.41, no.2, pp. 238-247, 2007.
-
(2007)
Methods
, vol.41
, Issue.2
, pp. 238-247
-
-
Sible, J.1
Tyson, J.2
-
4
-
-
33847211760
-
Bringing cartoons to life
-
J. Tyson, "Bringing Cartoons to Life," Nature, vol.445, no.7130, p. 823, 2007.
-
(2007)
Nature
, vol.445
, Issue.7130
, pp. 823
-
-
Tyson, J.1
-
5
-
-
0037342537
-
The Systems biology markup language (sbml): A medium for representation and exchange of biochemical network models
-
M. Hucka et al., "The Systems Biology Markup Language (SBML): A Medium for Representation and Exchange of Biochemical Network Models," Bioinformatics, vol.19, no.4, pp. 524-531, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
-
6
-
-
84884203765
-
Fusing and Composing macromolecular regulatory network models
-
R. Randhawa, C. Shaffer, and J. Tyson, "Fusing and Composing Macromolecular Regulatory Network Models," Proc. High Performance Computing Symp. (HPC '07), pp. 337-344, 2007.
-
(2007)
Proc. High Performance Computing Symp. (HPC '07)
, pp. 337-344
-
-
Randhawa, R.1
Shaffer, C.2
Tyson, J.3
-
7
-
-
33744792286
-
Analysis of a generic model of eukaryotic cell-cycle regulation
-
A. Csikasz-Nagy, D. Battogtokh, K. Chen, B. Novak, and J. Tyson, "Analysis of a Generic Model of Eukaryotic Cell-Cycle Regulation," Biophysical J., vol.90, no.12, pp. 4361-4379, 2006.
-
(2006)
Biophysical J.
, vol.90
, Issue.12
, pp. 4361-4379
-
-
Csikasz-Nagy, A.1
Battogtokh, D.2
Chen, K.3
Novak, B.4
Tyson, J.5
-
8
-
-
0035926571
-
Regulation of the eukaryotic cell cycle: Molecular antagonism, hysteresis, and irreversible transitions
-
J. Tyson and B. Novak, "Regulation of the Eukaryotic Cell Cycle: Molecular Antagonism, Hysteresis, and Irreversible Transitions," J. Theoretical Biology, vol.210, pp. 249-263, 2001.
-
(2001)
J. Theoretical Biology
, vol.210
, pp. 249-263
-
-
Tyson, J.1
Novak, B.2
-
9
-
-
3343020085
-
Integrative analysis of cell cycle control in budding yeast
-
DOI 10.1091/mbc.E03-11-0794
-
K. Chen, L. Calzone, A. Csikasz-Nagy, F. Cross, B. Novak, and J. Tyson, "Integrative Analysis of Cell Cycle Control in Budding Yeast," Molecular Biology of the Cell, vol.15, pp. 3841-3862, 2004. (Pubitemid 38989719)
-
(2004)
Molecular Biology of the Cell
, vol.15
, Issue.8
, pp. 3841-3862
-
-
Chen, K.C.1
Calzone, L.2
Csikasz-Nagy, A.3
Cross, F.R.4
Novak, B.5
Tyson, J.J.6
-
10
-
-
77952196892
-
-
DARPA BioSPICE Website, DARPA
-
DARPA BioSPICE Website, DARPA, http://community.biospice. org, 2005.
-
(2005)
-
-
-
11
-
-
77952134640
-
-
US Department of Energy Genomes to Life Website, DOE
-
US Department of Energy Genomes to Life Website, DOE, http:// doegenomestolife.org/, 2005.
-
(2005)
-
-
-
12
-
-
4444272353
-
Modelling the dynamics of the yeast pheromone pathway
-
B. Kofahl and E. Klipp, "Modelling the Dynamics of the Yeast Pheromone Pathway," Yeast, vol.21, no.10, pp. 831-850, 2004.
-
(2004)
Yeast
, vol.21
, Issue.10
, pp. 831-850
-
-
Kofahl, B.1
Klipp, E.2
-
13
-
-
23444449142
-
Integrative model of the response of yeast to osmotic shock
-
E. Klipp, B. Nordlander, R. Kruger, P. Gennemark, and S. Hohmann, "Integrative Model of the Response of Yeast to Osmotic Shock," Nature Biotechnology, vol.23, no.8, pp. 975-982, 2005.
-
(2005)
Nature Biotechnology
, vol.23
, Issue.8
, pp. 975-982
-
-
Klipp, E.1
Nordlander, B.2
Kruger, R.3
Gennemark, P.4
Hohmann, S.5
-
14
-
-
0346732922
-
Mathematical model of the morphogenesis checkpoint in budding yeast
-
A. Ciliberto, B. Novak, and J. Tyson, "Mathematical Model of the Morphogenesis Checkpoint in Budding Yeast," J. Cell Biology, vol.163, pp. 1243-1254, 2003.
-
(2003)
J. Cell Biology
, vol.163
, pp. 1243-1254
-
-
Ciliberto, A.1
Novak, B.2
Tyson, J.3
-
16
-
-
34249891460
-
SBMLmerge, a system for combining biochemical network models
-
M. Schulz, J. Uhlendorf, E. Klipp, and W. Liebermeister, "SBMLmerge, a System for Combining Biochemical Network Models," Genome Informatics, vol.17, no.1, pp. 62-71, 2006.
-
(2006)
Genome Informatics
, vol.17
, Issue.1
, pp. 62-71
-
-
Schulz, M.1
Uhlendorf, J.2
Klipp, E.3
Liebermeister, W.4
-
17
-
-
0037715313
-
Modular modeling of cellular systems with promot/diva
-
M. Ginkel, A. Kremling, T. Nutsch, R. Rehner, and E.D. Gilles, "Modular Modeling of Cellular Systems with ProMoT/Diva," Bioinformatics, vol.19, no.9, pp. 1169-1176, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.9
, pp. 1169-1176
-
-
Ginkel, M.1
Kremling, A.2
Nutsch, T.3
Rehner, R.4
Gilles, E.D.5
-
18
-
-
0141626866
-
E-Cell 2: Multi-Platform E-Cell simulation system
-
K. Takahashi, N. Ishikawa, Y. Sadamoto, H. Sasamoto, S. Ohta, A. Shiozawa, F. Miyoshi, Y. Naito, Y. Nakayama, and M. Tomita, "E-Cell 2: Multi-Platform E-Cell Simulation System," Bioinformatics, vol.19, pp. 1727-1729, 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 1727-1729
-
-
Takahashi, K.1
Ishikawa, N.2
Sadamoto, Y.3
Sasamoto, H.4
Ohta, S.5
Shiozawa, A.6
Miyoshi, F.7
Naito, Y.8
Nakayama, Y.9
Tomita, M.10
-
19
-
-
32044435851
-
Towards building the silicon cell: A modular approach
-
J. Snoep, F. Bruggeman, B. Olivier, and H. Westerhoff, "Towards Building the Silicon Cell: A Modular Approach," Biosystems, vol.83, pp. 207-216, 2006.
-
(2006)
Biosystems
, vol.83
, pp. 207-216
-
-
Snoep, J.1
Bruggeman, F.2
Olivier, B.3
Westerhoff, H.4
-
20
-
-
17744391319
-
The potential coupling interface: Metadata for model coupling
-
T. Bulatewicz, J. Cuny, and M. Warman, "The Potential Coupling Interface: Metadata for Model Coupling," Proc. Winter Simulation Conf. (WSC '04), pp. 183-190, 2004.
-
(2004)
Proc. Winter Simulation Conf. (WSC '04)
, pp. 183-190
-
-
Bulatewicz, T.1
Cuny, J.2
Warman, M.3
-
21
-
-
84993811418
-
Improving the composability of dod models and simulations
-
P. Davis and R. Anderson, "Improving the Composability of DoD Models and Simulations," J. Defense Modeling and Simulation, vol.1, no.1, pp. 5-17, 2004.
-
(2004)
J. Defense Modeling and Simulation
, vol.1
, Issue.1
, pp. 5-17
-
-
Davis, P.1
Anderson, R.2
-
22
-
-
0029200663
-
Architectural mismatch or why it's hard to build systems out of existing parts
-
D. Garlan, R. Allen, and J. Ockerbloom, "Architectural Mismatch or Why It's Hard to Build Systems Out of Existing Parts," Proc. 17th Int'l Conf. Software Eng. (ICSE '95), pp. 179-185, 1995.
-
(1995)
Proc. 17th Int'l Conf. Software Eng. (ICSE '95)
, pp. 179-185
-
-
Garlan, D.1
Allen, R.2
Ockerbloom, J.3
-
23
-
-
0034430882
-
Model composability: Formulating a research thrust: Composable simulations
-
S. Kasputis and H. Ng, "Model Composability: Formulating a Research Thrust: Composable Simulations," Proc. Winter Simulation Conf. (WSC '00), pp. 1577-1584, 2000.
-
(2000)
Proc. Winter Simulation Conf. (WSC '00)
, pp. 1577-1584
-
-
Kasputis, S.1
Ng, H.2
-
24
-
-
17744382212
-
Foundations of validating reusable behavioral models in engineering design problems
-
Proceedings of the 2004 Winter Simulation Conference
-
R. Malak and C. Paredis, "Foundations of Validating Reusable Behavioral Models in Engineering Design Problems," Proc. Winter Simulation Conf. (WSC '04), pp. 420-428, 2004. (Pubitemid 40575522)
-
(2004)
Proceedings - Winter Simulation Conference
, vol.1
, pp. 420-428
-
-
Malak Jr., R.J.1
Paredis, C.J.J.2
-
25
-
-
33846663360
-
A Case study of model context for simulation composability and reusability
-
M. Spiegel, P. Reynolds, and D. Brogan, "A Case Study of Model Context for Simulation Composability and Reusability," Proc. Winter Simulation Conf. (WSC '05), pp. 437-444, 2005.
-
(2005)
Proc. Winter Simulation Conf. (WSC '05)
, pp. 437-444
-
-
Spiegel, M.1
Reynolds, P.2
Brogan, D.3
-
29
-
-
77952165784
-
-
P. Grosso, E. Maler, J. Marsh, and N. Walsh, "XPointer Framework Version 1.0 W3C Recommendation," http:// www.w3.org/TR/xptr-framework/, 2003.
-
(2003)
XPointer Framework Version 1.0 W3C Recommendation
-
-
Grosso, P.1
Maler, E.2
Marsh, J.3
Walsh, N.4
-
30
-
-
33646746237
-
The jigcell model builder: A spreadsheet interface for creating biochemical reaction network models
-
Apr.- June
-
M.T. Vass, C. Shaffer, N. Ramakrishnan, L. Watson, and J. Tyson, "The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol.3, no.2, pp. 155-164, Apr.- June 2006.
-
(2006)
IEEE/ACM Trans. Computational Biology and Bioinformatics
, vol.3
, Issue.2
, pp. 155-164
-
-
Vass, M.T.1
Shaffer, C.2
Ramakrishnan, N.3
Watson, L.4
Tyson, J.5
-
31
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
N.L. Novre, A. Finney, M. Hucka, U. Bhalla, F. Campagne, J. Collado-Vides, E. Crampin, M. Halstead, E. Klipp, P. Mendes, P. Nielsen, H. Sauro, B. Shapiro, J. Snoep, H. Spence, and B. Wanner, "Minimum Information Requested in the Annotation of Biochemical Models (MIRIAM)," Nature Biotechnology, vol.23, no.12, pp. 1509-1515, 2005.
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1509-1515
-
-
Novre, N.L.1
Finney, A.2
Hucka, M.3
Bhalla, U.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
Nielsen, P.11
Sauro, H.12
Shapiro, B.13
Snoep, J.14
Spence, H.15
Wanner, B.16
-
32
-
-
33644877164
-
BioModels database: A free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
-
N.L. Novre, B. Bornstein, A. Broicher, M. Courtot, M. Donizelli, H. Dharuri, L.L.L.H. Sauro, M. Schilstra, B. Shapiro, J. Snoep, and M. Hucka, "BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems," Nucleic Acids Research, vol.34, pp. D689-91, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Novre, N.L.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Sauro, L.L.L.H.7
Schilstra, M.8
Shapiro, B.9
Snoep, J.10
Hucka, M.11
|