SCOPUS 정보 검색 플랫폼

European Physical Journal E

Volumn 31, Issue 2, 2010, Pages 201-205

Intensities of DNA ion-phosphate modes in the low-frequency Raman spectra

(2) Perepelytsya, S M a Volkov, S N a

a BOGOLYUBOV INSTITUTE FOR THEORETICAL PHYSICS (Ukraine)

Author keywords

[No Author keywords available]

Indexed keywords

COUNTERIONS; HIGHER FREQUENCIES; LOW-FREQUENCY RAMAN; LOW-FREQUENCY SPECTRA; PHOSPHATE GROUP; RAMAN INTENSITIES;

CESIUM; CESIUM COMPOUNDS; DNA; IONS; RAMAN SPECTROSCOPY;

GENES;

DNA; ION; PHOSPHATE;

ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; METHODOLOGY; RAMAN SPECTROMETRY; ULTRASTRUCTURE;

COMPUTER SIMULATION; DNA; IONS; MODELS, CHEMICAL; MODELS, MOLECULAR; PHOSPHATES; SPECTRUM ANALYSIS, RAMAN;

EID: 77952094974 PISSN: 12928941 EISSN: 1292895X Source Type: Journal
DOI: 10.1140/epje/i2010-10566-6 Document Type: Article

Times cited : (22)

References (42)

1
- 0015541536
- 10.1002/bip.1973.360120109
- V.I. Ivanov 1973 Biopolymers 12 89 10.1002/bip.1973.360120109
- (1973) Biopolymers , vol.12 , pp. 89
- Ivanov, V.I.¹

2
- 0030947539
- Ionic effects on the elasticity of single DNA molecules
- DOI 10.1073/pnas.94.12.6185
- C.G. Baumann 1997 Proc. Natl. Acad. Sci. U.S.A. 94 6185 10.1073/pnas.94.12.6185 1997PNAS...94.6185B (Pubitemid 27270659)
- (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , Issue.12 , pp. 6185-6190
- Baumann, C.G.¹ Smith, S.B.² Bloomfield, V.A.³ Bustamante, C.⁴

3
- 18144376538
- 10.1103/PhysRevLett.82.4138 1999PhRvL.82.4138K
- A.A. Kornyshev S. Leikin 1999 Phys. Rev. Lett. 82 4138 10.1103/PhysRevLett.82.4138 1999PhRvL..82.4138K
- (1999) Phys. Rev. Lett. , vol.82 , pp. 4138
- Kornyshev, A.A.¹ Leikin, S.²

4
- 0033894923
- Electrostatic mechanisms of DNA deformation
- DOI 10.1146/annurev.biophys.29.1.497
- L.D. Williams L.J. Maher III 2000 Annu. Rev. Biophys. Biomol. Struct. 29 497 10.1146/annurev.biophys.29.1.497 (Pubitemid 30599602)
- (2000) Annual Review of Biophysics and Biomolecular Structure , vol.29 , pp. 497-521
- Williams, L.D.¹ Maher III, L.J.²

5
- 0036857758
- 10.1088/0034-4885/65/11/201 2002RPPh.65.1577L
- Y. Levin 2002 Rep. Prog. Phys. 65 1577 10.1088/0034-4885/65/11/201 2002RPPh...65.1577L
- (2002) Rep. Prog. Phys. , vol.65 , pp. 1577
- Levin, Y.¹

6
- 34548391310
- Structure and interactions of biological helices
- DOI 10.1103/RevModPhys.79.943
- A.A. Kornyshev 2007 Rev. Mod. Phys. 79 943 10.1103/RevModPhys.79.943 2346331 2007RvMP...79..943K (Pubitemid 47364615)
- (2007) Reviews of Modern Physics , vol.79 , Issue.3 , pp. 943-996
- Kornyshev, A.A.¹ Lee, D.J.² Leikin, S.³ Wynveen, A.⁴

7
- 34548560374
- The role of electrostatics in the B to A transition of DNA: From solution to assembly
- DOI 10.1088/0953-8984/19/41/416103, PII S0953898407475129
- L. Rudd D.J. Lee A.A. Kornyshev 2007 J. Phys.: Condens. Matter 19 416103 10.1088/0953-8984/19/41/416103 (Pubitemid 47397759)
- (2007) Journal of Physics Condensed Matter , vol.19 , Issue.41 , pp. 416103
- Rudd, L.¹ Lee, D.J.² Kornyshev, A.A.³

8
- 0018801405
- 10.1016/0022-2836(79)90040-8
- I. Ya. Skuratovsii 1979 J. Mol. Biol. 134 369 10.1016/0022-2836(79)90040- 8
- (1979) J. Mol. Biol. , vol.134 , pp. 369
- Ya. Skuratovsii, I.¹

9
- 0030763137
- Localization of divalent metal ions in the minor groove of DNA A-tracts
- DOI 10.1021/ja9704085
- N.V. Hud J. Feigon 1997 J. Am. Chem. Soc. 119 5756 10.1021/ja9704085 (Pubitemid 27321444)
- (1997) Journal of the American Chemical Society , vol.119 , Issue.24 , pp. 5756-5757
- Hud, N.V.¹ Feigon, J.²

10
- 0033594498
- A 'hydrat-ion' spine in a B-DNA minor groove
- DOI 10.1021/ja984346+
- V. Tereshko G. Minasov M. Egli 1999 J. Am. Chem. Soc. 121 3590 10.1021/ja984346+ (Pubitemid 29200267)
- (1999) Journal of the American Chemical Society , vol.121 , Issue.15 , pp. 3590-3595
- Tereshko, V.¹ Minasov, G.² Egli, M.³

11
- 0034005285
- 2 [4]
- DOI 10.1021/ja9919579
- K.K. Woods 2000 J. Am. Chem. Soc. 122 1546 10.1021/ja9919579 (Pubitemid 30120441)
- (2000) Journal of the American Chemical Society , vol.122 , Issue.7 , pp. 1546-1547
- Woods, K.K.¹ McFail-Isom, L.² Sines, C.C.³ Howerton, S.B.⁴ Stephens, R.K.⁵ Williams, L.D.⁶

12
- 0035283086
- 10.1093/nar/29.5.1208
- V. Tereshko 2001 Nucl. Acids Res. 29 1208 10.1093/nar/29.5.1208
- (2001) Nucl. Acids Res. , vol.29 , pp. 1208
- Tereshko, V.¹

13
- 0037928815
- 10.1103/PhysRevLett.90.188103 2003PhRvL.90r8103D
- R. Das 2003 Phys. Rev. Lett. 90 188103 10.1103/PhysRevLett.90.188103 2003PhRvL..90r8103D
- (2003) Phys. Rev. Lett. , vol.90 , pp. 188103
- Das, R.¹

14
- 42749101028
- Spatial distribution of competing ions around DNA in solution
- DOI 10.1103/PhysRevLett.93.248103, 248103
- K. Andersen 2004 Phys. Rev. Lett. 93 248103 10.1103/PhysRevLett.93.248103 2004PhRvL..93x8103A (Pubitemid 40086717)
- (2004) Physical Review Letters , vol.93 , Issue.24 , pp. 2481031-2481034
- Andresen, K.¹ Das, R.² Park, H.Y.³ Smith, H.⁴ Kwok, L.W.⁵ Lamb, J.S.⁶ Kirkland, E.J.⁷ Herschlag, D.⁸ Finkelstein, K.D.⁹ Pollack, L.¹⁰

15
- 46749106335
- 10.1529/biophysj.107.123174 2008BpJ.95.287A
- K. Andresen 2008 Biophys. J. 95 287 10.1529/biophysj.107.123174 2008BpJ....95..287A
- (2008) Biophys. J. , vol.95 , pp. 287
- Andresen, K.¹

16
- 57149093621
- 10.1103/PhysRevLett.101.228101 2008PhRvL.101v8101Q
- X. Qiu 2008 Phys. Rev. Lett. 101 228101 10.1103/PhysRevLett.101.228101 2008PhRvL.101v8101Q
- (2008) Phys. Rev. Lett. , vol.101 , pp. 228101
- Qiu, X.¹

17
- 0017895903
- 10.1017/S0033583500002031
- G.S. Manning 1978 Q. Rev. Biophys. 11 179 10.1017/S0033583500002031
- (1978) Q. Rev. Biophys. , vol.11 , pp. 179
- Manning, G.S.¹

18
- 0024556108
- Structure of DNA hydration shells studied by Raman spectroscopy
- DOI 10.1002/bip.360280509
- N.J. Tao S.M. Lindsay A. Rupprecht 1989 Biopolymers 28 1019 10.1002/bip.360280509 (Pubitemid 19105219)
- (1989) Biopolymers , vol.28 , Issue.5 , pp. 1019-1030
- Tao, N.J.¹ Lindsay, S.M.² Ruprecht, A.³

19
- 0027664902
- V. Ya. Maleyev 1993 Biofizika 38 768
- (1993) Biofizika , vol.38 , pp. 768
- Ya. Maleyev, V.¹

20
- 0034327565
- 10.1021/ja000707l
- D. Hamelberg 2000 J. Am. Chem. Soc. 122 10513 10.1021/ja000707l
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 10513
- Hamelberg, D.¹

21
- 0035964383
- Locating monovalent cations in the grooves of B-DNA
- DOI 10.1021/bi010391+
- S.B. Howerton 2001 Biochemistry 40 10023 10.1021/bi010391+ (Pubitemid 32800109)
- (2001) Biochemistry , vol.40 , Issue.34 , pp. 10023-10031
- Howerton, S.B.¹ Sines, C.C.² VanDerveer, D.³ Williams, L.D.⁴

22
- 0037102493
- 10.1093/nar/gkf472
- D. Hamelberg L.D. Williams W.D. Wilson 2002 Nucl. Acids Res. 30 3615 10.1093/nar/gkf472
- (2002) Nucl. Acids Res. , vol.30 , pp. 3615
- Hamelberg, D.¹ Williams, L.D.² Wilson, W.D.³

23
- 0344011142
- A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: Diffusion and averaged binding of water and cations
- DOI 10.1093/nar/gkg802
- N. Korolev 2003 Nucl. Acids Res. 31 5971 10.1093/nar/gkg802 (Pubitemid 37442323)
- (2003) Nucleic Acids Research , vol.31 , Issue.20 , pp. 5971-5981
- Korolev, N.¹ Lyubartsev, A.P.² Laaksonen, A.³ Nordenskiold, L.⁴

24
- 4043179941
- DNA and its counterions: A molecular dynamics study
- DOI 10.1093/nar/gkh765
- P. Varnai K. Zakrzewska 2004 Nucl. Acids Res. 32 4269 10.1093/nar/gkh765 (Pubitemid 39232299)
- (2004) Nucleic Acids Research , vol.32 , Issue.14 , pp. 4269-4280
- Varnai, P.¹ Zakrzewska, K.²

25
- 6944220065
- Ion motions in molecular dynamics simulations on DNA
- DOI 10.1073/pnas.0406435101
- S.Y. Ponomarev K.M. Thayer D.L. Beveridge 2004 Proc. Natl. Acad. Sci. U.S.A. 101 14771 10.1073/pnas.0406435101 2004PNAS..10114771P (Pubitemid 39410750)
- (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , Issue.41 , pp. 14771-14775
- Ponornarev, S.Y.¹ Thayer, K.M.² Beveridge, D.L.³

26
- 32644446799
- + with condensed ordered DNA. A molecular dynamics computer simulation study
- DOI 10.1093/nar/gkj434
- Y. Cheng N. Korolev L. Nordenskiöld 2006 Nucl. Acids Res. 34 686 10.1093/nar/gkj434 (Pubitemid 43240255)
- (2006) Nucleic Acids Research , vol.34 , Issue.2 , pp. 686-696
- Cheng, Y.¹ Korolev, N.² Nordenskiold, L.³

27
- 0023340470
- S.N. Volkov A.M. Kosevich 1987 Mol. Biol. 21 797
- (1987) Mol. Biol. , vol.21 , pp. 797
- Volkov, S.N.¹ Kosevich, A.M.²

28
- 8844258414
- S.N. Volkov A.M. Kosevich G.E. Weinreb 1989 Biopolimery i Kletka 5 32
- (1989) Biopolimery i Kletka , vol.5 , pp. 32
- Volkov, S.N.¹ Kosevich, A.M.² Weinreb, G.E.³

29
- 0025828527
- S.N. Volkov A.M. Kosevich 1991 J. Biomolec. Struct. Dyn. 8 1069
- (1991) J. Biomolec. Struct. Dyn. , vol.8 , pp. 1069
- Volkov, S.N.¹ Kosevich, A.M.²

30
- 0003959593
- edited by M. Peyrard (Springer)
- A.M. Kosevich, S.N. Volkov, in Nonlinear Excitations in Biomolecules, edited by M. Peyrard (Springer, 1995)
- (1995) Nonlinear Excitations in Biomolecules
- Kosevich, A.M.¹ Volkov, S.N.²

31
- 34548572214
- S.M. Perepelytsya S.N. Volkov 2004 Ukr. J. Phys. 49 1072
- (2004) Ukr. J. Phys. , vol.49 , pp. 1072
- Perepelytsya, S.M.¹ Volkov, S.N.²

32
- 37449010252
- Counterion vibrations in the DNA low-frequency spectra
- DOI 10.1140/epje/i2007-10236-x
- S.M. Perepelytsya S.N. Volkov 2007 Eur. Phys. J. E 24 261 10.1140/epje/i2007-10236-x (Pubitemid 50006895)
- (2007) European Physical Journal E , vol.24 , Issue.3 , pp. 261-269
- Perepelytsya, S.M.¹ Volkov, S.N.²

33
- 0024541941
- Low-frequency dynamics and Raman scattering of crystals, of B-, A-, and Z-DNA, and fibers of C-DNA
- DOI 10.1002/bip.360280210
- Om P. Lamba A.H.-J. Wang G.J. Thomas 1989 Biopolymers 28 667 10.1002/bip.360280210 (Pubitemid 19079244)
- (1989) Biopolymers , vol.28 , Issue.2 , pp. 667-678
- Lamba, O.P.¹ Wang, A.H.-J.² Thomas Jr., G.J.³

34
- 0025083328
- T. Weidlich 1990 J. Biomol. Struct. Dyn. 8 139
- (1990) J. Biomol. Struct. Dyn. , vol.8 , pp. 139
- Weidlich, T.¹

35
- 0024994165
- 10.1002/bip.360300324
- T. Weidlich 1990 Biopolymers 30 477 10.1002/bip.360300324
- (1990) Biopolymers , vol.30 , pp. 477
- Weidlich, T.¹

36
- 77952094119
- L.A. Bulavin 2007 Rep. NAS Ukraine 10 69
- (2007) Rep. NAS Ukraine , vol.10 , pp. 69
- Bulavin, L.A.¹

37
- 34547177764
- Raman intensity and spectra predictions for cylindrical viruses
- DOI 10.1103/PhysRevE.76.011906
- E.C. Dykeman O.F. Sankey K.-T. Tsen 2007 Phys. Rev. E 76 011906 10.1103/PhysRevE.76.011906 2007PhRvE..76a1906D (Pubitemid 47112607)
- (2007) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics , vol.76 , Issue.1 , pp. 011906
- Dykeman, E.C.¹ Sankey, O.F.² Tsen, K.-T.³

38
- 40749090883
- Low frequency mechanical modes of viral capsids: An atomistic approach
- DOI 10.1103/PhysRevLett.100.028101
- E.C. Dykeman O.F. Sankey 2008 Phys. Rev. Lett. 100 028101 10.1103/PhysRevLett.100.028101 2008PhRvL.100b8101D (Pubitemid 351388992)
- (2008) Physical Review Letters , vol.100 , Issue.2 , pp. 028101
- Dykeman, E.C.¹ Sankey, O.F.²

39
- 70350214571
- 10.1103/PhysRevE.80.041909 2009PhRvE.80d1909D
- E.C. Dykeman 2009 Phys. Rev. E 80 041909 10.1103/PhysRevE.80.041909 2009PhRvE..80d1909D
- (2009) Phys. Rev. e , vol.80 , pp. 041909
- Dykeman, E.C.¹

40
- 0004105329
- (Moscow)
- M.V. Volkenshtein, M.A. Eliashevich, B.I. Stepanov, Vibrations of Molecules (Moscow, 1949)
- (1949) Vibrations of Molecules
- Volkenshtein, M.V.¹ Eliashevich, M.A.² Stepanov, B.I.³

41
- 0002318719
- L. Silberstein 1917 Philos. Mag. 33 92
- (1917) Philos. Mag. , vol.33 , pp. 92
- Silberstein, L.¹

42
- 0032417684
- Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets
- DOI 10.1073/pnas.95.26.15194
- H. Rozenberg 1998 Proc. Natl. Acad. Sci. U.S.A. 95 1594 10.1073/pnas.95.26.15194 (Pubitemid 29018675)
- (1998) Proceedings of the National Academy of Sciences of the United States of America , vol.95 , Issue.26 , pp. 15194-15199
- Rozenberg, H.¹ Rabinovich, D.² Frolow, F.³ Hegde, R.S.⁴ Shakked, Z.⁵

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.