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Volumn 41, Issue 3, 2010, Pages 225-231

Current knowledge of microRNA characterization in agricultural animals

Author keywords

MicroRNA; MiRBase; Profiling; SNP

Indexed keywords

MICRORNA;

EID: 77952043820     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2009.01995.x     Document Type: Review
Times cited : (28)

References (60)
  • 1
    • 3142726606 scopus 로고    scopus 로고
    • Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning
    • Ambros V. Lee R.C. (2004) Identification of microRNAs and other tiny noncoding RNAs by cDNA cloning. Methods in Molecular Biology 265, 131 58.
    • (2004) Methods in Molecular Biology , vol.265 , pp. 131-58
    • Ambros, V.1    Lee, R.C.2
  • 2
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • Ambros V., Bartel B., Bartel D.P. et al. (2003) A uniform system for microRNA annotation. RNA 9, 277 9.
    • (2003) RNA , vol.9 , pp. 277-9
    • Ambros, V.1    Bartel, B.2    Bartel, D.P.3
  • 6
    • 37549033548 scopus 로고    scopus 로고
    • Molecular biology. The two faces of miRNA
    • Buchan J.R. Parker R. (2007) Molecular biology. The two faces of miRNA. Science 18, 1877 8.
    • (2007) Science , vol.18 , pp. 1877-8
    • Buchan, J.R.1    Parker, R.2
  • 8
    • 9344235449 scopus 로고    scopus 로고
    • Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
    • Cai X., Hagedorn C.H. Cullen B.R. (2004) Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA 10, 1957 66.
    • (2004) RNA , vol.10 , pp. 1957-66
    • Cai, X.1    Hagedorn, C.H.2    Cullen, B.R.3
  • 9
    • 77952046984 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms concordant with the hornedpolled trait in Holsteins
    • Cargill E.J., Nissing N.J. Grosz M.D. (2008) Single nucleotide polymorphisms concordant with the hornedpolled trait in Holsteins. BMC Research Notes 1, 128.
    • (2008) BMC Research Notes , vol.1 , pp. 128
    • Cargill, E.J.1    Nissing, N.J.2    Grosz, M.D.3
  • 10
    • 60149088848 scopus 로고    scopus 로고
    • Origins and Mechanisms of miRNAs and siRNAs
    • Carthew R.W. Sontheimer E.J. (2009) Origins and Mechanisms of miRNAs and siRNAs. Cell 136, 642 55.
    • (2009) Cell , vol.136 , pp. 642-55
    • Carthew, R.W.1    Sontheimer, E.J.2
  • 11
    • 33745577150 scopus 로고    scopus 로고
    • A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep
    • Clop A., Marcq F., Takeda H. et al. (2006) A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Nature Genetics 38, 813 8.
    • (2006) Nature Genetics , vol.38 , pp. 813-8
    • Clop, A.1    Marcq, F.2    Takeda, H.3
  • 13
    • 61449134042 scopus 로고    scopus 로고
    • Detection of porcine sperm microRNAs using a heterologous microRNA microarray and reverse transcriptase polymerase chain reaction
    • Curry E., Ellis S.E. Pratt S.L. (2008) Detection of porcine sperm microRNAs using a heterologous microRNA microarray and reverse transcriptase polymerase chain reaction. Molecular Reproduction and Development 76, 218 9.
    • (2008) Molecular Reproduction and Development , vol.76 , pp. 218-9
    • Curry, E.1    Ellis, S.E.2    Pratt, S.L.3
  • 17
    • 33748346026 scopus 로고    scopus 로고
    • Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions
    • Didiano D. Hobert O. (2006) Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions. Nature Structural and Molecular Biology 13, 849 51.
    • (2006) Nature Structural and Molecular Biology , vol.13 , pp. 849-51
    • Didiano, D.1    Hobert, O.2
  • 21
  • 23
    • 33847108451 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    • Gu Z., Eleswarapu S. Jiang H. (2007) Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland. FEBS Letters 581, 981 8.
    • (2007) FEBS Letters , vol.581 , pp. 981-8
    • Gu, Z.1    Eleswarapu, S.2    Jiang, H.3
  • 24
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond S.M., Boettcher S., Caudy A.A., Kobayashi R. Hannon G.J. (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293, 1146 50.
    • (2001) Science , vol.293 , pp. 1146-50
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 25
  • 26
    • 62149087471 scopus 로고    scopus 로고
    • Identification of microRNA in the developing chick immune organs
    • Hicks J.A., Tembhurne P.A. Liu H.C. (2009) Identification of microRNA in the developing chick immune organs. Immunogenetics 61, 231 40.
    • (2009) Immunogenetics , vol.61 , pp. 231-40
    • Hicks, J.A.1    Tembhurne, P.A.2    Liu, H.C.3
  • 27
    • 52449084200 scopus 로고    scopus 로고
    • Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
    • Huang T.H., Zhu M.J., Li X.Y. Zhao S.H. (2008) Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development. PLoS ONE 3, e3225.
    • (2008) PLoS ONE , vol.3
    • Huang, T.H.1    Zhu, M.J.2    Li, X.Y.3    Zhao, S.H.4
  • 28
    • 54049090778 scopus 로고    scopus 로고
    • Combinatorial microRNAs: Working together to make a difference
    • Ivanovska I. Cleary M.A. (2008) Combinatorial microRNAs: working together to make a difference. Cell Cycle 7, 3137 42.
    • (2008) Cell Cycle , vol.7 , pp. 3137-42
    • Ivanovska, I.1    Cleary, M.A.2
  • 29
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
    • Ketting R.F., Fischer S.E., Bernstein E., Sijen T., Hannon G.J. Plasterk R.H. (2001) Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes & Development 15, 2654 9.
    • (2001) Genes & Development , vol.15 , pp. 2654-9
    • Ketting, R.F.1    Fischer, S.E.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.6
  • 30
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek A., Grün D., Poy M.N. et al. (2005) Combinatorial microRNA target predictions. Nature Genetics 37, 495 500.
    • (2005) Nature Genetics , vol.37 , pp. 495-500
    • Krek, A.1    Grün, D.2    Poy, M.N.3
  • 31
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee R.C., Feinbaum R.L. Ambros V. (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843 5.
    • (1993) Cell , vol.75 , pp. 843-5
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 32
    • 0141843656 scopus 로고    scopus 로고
    • The nuclear RNase III Drosha initiates microRNA processing
    • Lee Y., Ahn C., Han J. et al. (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425, 415 9.
    • (2003) Nature , vol.425 , pp. 415-9
    • Lee, Y.1    Ahn, C.2    Han, J.3
  • 34
    • 40449141576 scopus 로고    scopus 로고
    • Characterization of a newly developed chicken 44K Agilent microarray
    • Li X., Chiang H.I., Zhu J., Dowd S.E. Zhou H. (2008) Characterization of a newly developed chicken 44K Agilent microarray. BMC Genomics 2008, 60.
    • (2008) BMC Genomics , vol.2008 , pp. 60
    • Li, X.1    Chiang, H.I.2    Zhu, J.3    Dowd, S.E.4    Zhou, H.5
  • 35
    • 67349146291 scopus 로고    scopus 로고
    • Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    • Long J.E. Chen H.X. (2009) Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning. Biochemical Genetics 47, 329 433.
    • (2009) Biochemical Genetics , vol.47 , pp. 329-433
    • Long, J.E.1    Chen, H.X.2
  • 37
    • 57349120157 scopus 로고    scopus 로고
    • Sequence conservation and differential expression of Marek's disease virus microRNAs
    • Morgan R., Anderson A., Bernberg E. et al. (2008) Sequence conservation and differential expression of Marek's disease virus microRNAs. Journal of Virology 82, 12213 20.
    • (2008) Journal of Virology , vol.82 , pp. 12213-20
    • Morgan, R.1    Anderson, A.2    Bernberg, E.3
  • 38
    • 60949097953 scopus 로고    scopus 로고
    • Predicting microRNA targets in time-series microarray experiments via functional data analysis
    • Parker B.J. Wen J. (2009) Predicting microRNA targets in time-series microarray experiments via functional data analysis. BMC Bioinformatics 10 (Suppl. 1 S32.
    • (2009) BMC Bioinformatics , vol.10 , Issue.1
    • Parker, B.J.1    Wen, J.2
  • 43
  • 45
    • 58549117346 scopus 로고    scopus 로고
    • Annotation of 390 bovine miRNA genes by sequence similarity with other species
    • Strozzi F., Mazza R., Malinverni R. Williams J.L. (2009) Annotation of 390 bovine miRNA genes by sequence similarity with other species. Animal Genetics 40, 125.
    • (2009) Animal Genetics , vol.40 , pp. 125
    • Strozzi, F.1    Mazza, R.2    Malinverni, R.3    Williams, J.L.4
  • 46
    • 54549108798 scopus 로고    scopus 로고
    • MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
    • Tay Y., Zhang J., Thomson A.M., Lim B. Rigoutsos I. (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455, 1124 8.
    • (2008) Nature , vol.455 , pp. 1124-8
    • Tay, Y.1    Zhang, J.2    Thomson, A.M.3    Lim, B.4    Rigoutsos, I.5
  • 48
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: MicroRNAs can up-regulate translation
    • Vasudevan S., Tong Y. Steitz J.A. (2007) Switching from repression to activation: microRNAs can up-regulate translation. Science 318, 1931 4.
    • (2007) Science , vol.318 , pp. 1931-4
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 49
    • 67349185411 scopus 로고    scopus 로고
    • MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
    • Waidner L.A., Morgan R.W., Anderson A.S. et al. (2009) MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific. Virology 388, 128 36.
    • (2009) Virology , vol.388 , pp. 128-36
    • Waidner, L.A.1    Morgan, R.W.2    Anderson, A.S.3
  • 50
    • 33645472191 scopus 로고    scopus 로고
    • Systematic identification of microRNA functions by combining target prediction and expression profiling
    • Wang X. Wang X. (2006) Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucleic Acids Research 34, 1646 52.
    • (2006) Nucleic Acids Research , vol.34 , pp. 1646-52
    • Wang, X.1    Wang, X.2
  • 51
    • 42949131237 scopus 로고    scopus 로고
    • Computational methods for microRNA target prediction
    • Watanabe Y., Tomita M. Kanai A. (2007) Computational methods for microRNA target prediction. Methods in Enzymology 427, 65 86.
    • (2007) Methods in Enzymology , vol.427 , pp. 65-86
    • Watanabe, Y.1    Tomita, M.2    Kanai, A.3
  • 52
    • 37349067823 scopus 로고    scopus 로고
    • A subset of skin-expressed microRNAs with possible roles in goat and sheep hair growth based on expression profiling of mammalian microRNAs
    • Wenguang Z., Jianghong W., Jinquan L. Yashizawa M. (2007) A subset of skin-expressed microRNAs with possible roles in goat and sheep hair growth based on expression profiling of mammalian microRNAs. OMICS 11, 385 96.
    • (2007) OMICS , vol.11 , pp. 385-96
    • Wenguang, Z.1    Jianghong, W.2    Jinquan, L.3    Yashizawa, M.4
  • 53
    • 23444460778 scopus 로고    scopus 로고
    • Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing
    • Wernersson R., Schierup M.H., Jørgensen F.G. et al. (2005) Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. BMC Genomics 6, 70.
    • (2005) BMC Genomics , vol.6 , pp. 70
    • Wernersson, R.1    Schierup, M.H.2    Jørgensen, F.G.3
  • 55
    • 71849111303 scopus 로고    scopus 로고
    • A structural perspective of the protein-RNA interactions involved in virus-induced RNA silencing and its suppression
    • Yang J. Yuan Y.A. (2009) A structural perspective of the protein-RNA interactions involved in virus-induced RNA silencing and its suppression. Biochimica Biophysica Acta 1789, 642 52.
    • (2009) Biochimica Biophysica Acta , vol.1789 , pp. 642-52
    • Yang, J.1    Yuan, Y.A.2
  • 56
    • 34250845782 scopus 로고    scopus 로고
    • Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1
    • Yao Y., Zhao Y., Xu H., Smith L.P., Lawrie C.H., Sewer A., Zavolan M. Nair V. (2007) Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1. Journal of Virology 81, 7164 70.
    • (2007) Journal of Virology , vol.81 , pp. 7164-70
    • Yao, Y.1    Zhao, Y.2    Xu, H.3    Smith, L.P.4    Lawrie, C.H.5    Sewer, A.6    Zavolan, M.7    Nair, V.8
  • 57
    • 0347361541 scopus 로고    scopus 로고
    • Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs
    • Yi R., Qin Y., Macara I.G. Cullen B.R. (2003) Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes & Development 17, 3011 6.
    • (2003) Genes & Development , vol.17 , pp. 3011-6
    • Yi, R.1    Qin, Y.2    MacAra, I.G.3    Cullen, B.R.4
  • 59
    • 64549122458 scopus 로고    scopus 로고
    • Intron-mediated RNA interference and microRNA biogenesis
    • Ying S.Y. Lin S.L. (2009) Intron-mediated RNA interference and microRNA biogenesis. Methods in Molecular Biology 487, 387 413.
    • (2009) Methods in Molecular Biology , vol.487 , pp. 387-413
    • Ying, S.Y.1    Lin, S.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.