메뉴 건너뛰기




Volumn 50, Issue 4, 2010, Pages 500-510

Molecular scaffolds with high propensity to form multi-target activity cliffs

Author keywords

[No Author keywords available]

Indexed keywords

BINDERS; LANDFORMS;

EID: 77952000491     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci100059q     Document Type: Article
Times cited : (49)

References (36)
  • 1
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. molecular frameworks
    • Bemis, G. W.; Murcko, M. A. The Properties of Known Drugs. 1. Molecular Frameworks J. Med. Chem. 1996, 39, 2887-2893
    • (1996) J. Med. Chem. , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 3
    • 33750701141 scopus 로고    scopus 로고
    • On scaffolds and hopping in medicinal chemistry
    • Brown, N.; Jacoby, E. On Scaffolds and Hopping in Medicinal Chemistry Mini Rev. Med. Chem. 2006, 6, 1217-1229
    • (2006) Mini Rev. Med. Chem. , vol.6 , pp. 1217-1229
    • Brown, N.1    Jacoby, E.2
  • 4
    • 33846694819 scopus 로고    scopus 로고
    • Scaffold selection and scaffold hopping in lead generation: A medicinal chemistry perspective
    • Zhao, H. Scaffold Selection and Scaffold Hopping in Lead Generation: A Medicinal Chemistry Perspective Drug Discovery Today 2007, 12, 149-155
    • (2007) Drug Discovery Today , vol.12 , pp. 149-155
    • Zhao, H.1
  • 5
    • 75749105013 scopus 로고    scopus 로고
    • Drug and drug candidate building block analysis
    • Wang, J.; Hou, T. Drug and Drug Candidate Building Block Analysis J. Chem. Inf. Model. 2010, 50, 55-67
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 55-67
    • Wang, J.1    Hou, T.2
  • 6
    • 0032058905 scopus 로고    scopus 로고
    • RECAP - Retrosynthetic combinatorial analysis procedure: A powerful new technique for identifying privileged molecular fragments with useful applications in combinatorial chemistry
    • Lewell, X. Q.; Judd, D. B.; Watson, S. P.; Hann, M. M. RECAP - retrosynthetic combinatorial analysis procedure: a powerful new technique for identifying privileged molecular fragments with useful applications in combinatorial chemistry J. Chem. Inf. Comput. Sci. 1998, 38, 511-522
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 511-522
    • Lewell, X.Q.1    Judd, D.B.2    Watson, S.P.3    Hann, M.M.4
  • 7
    • 33746740077 scopus 로고    scopus 로고
    • Quest for the Rings. in silico exploration of ring universe to identify novel bioactive heteroaromatic scaffolds
    • Ertl, P.; Jelfs, S.; Mühlbacher, J.; Schuffenhauer, A.; Selzer, P. Quest for the Rings. In Silico Exploration of Ring Universe To Identify Novel Bioactive Heteroaromatic Scaffolds J. Med. Chem. 2006, 49, 4568-4573
    • (2006) J. Med. Chem. , vol.49 , pp. 4568-4573
    • Ertl, P.1    Jelfs, S.2    Mühlbacher, J.3    Schuffenhauer, A.4    Selzer, P.5
  • 9
    • 33646242741 scopus 로고    scopus 로고
    • Assessing the scaffold diversity of screening libraries
    • Krier, M.; Bret, G.; Rognan, D. Assessing the Scaffold Diversity of Screening Libraries J. Chem. Inf. Model. 2006, 46, 512-524
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 512-524
    • Krier, M.1    Bret, G.2    Rognan, D.3
  • 11
    • 75749154412 scopus 로고    scopus 로고
    • Scaffold distributions in bioactive molecules, clinical trials compounds, and drugs
    • Hu, Y.; Bajorath, J. Scaffold Distributions in Bioactive Molecules, Clinical Trials Compounds, and Drugs ChemMedChem 2010, 5, 187-190
    • (2010) ChemMedChem , vol.5 , pp. 187-190
    • Hu, Y.1    Bajorath, J.2
  • 12
    • 33646258711 scopus 로고    scopus 로고
    • Mining a chemical database for fragment co-occurrence: Discovery of chemical clichés
    • Lameijer, E.; Kok, J. N.; Bäck, T.; Ijzerman, A. P. Mining a Chemical Database for Fragment Co-Occurrence: Discovery of Chemical Clichés J. Chem. Inf. Model. 2007, 46, 553-562
    • (2007) J. Chem. Inf. Model. , vol.46 , pp. 553-562
    • Lameijer, E.1    Kok, J.N.2    Bäck, T.3    Ijzerman, A.P.4
  • 13
    • 42949088496 scopus 로고    scopus 로고
    • Chemical fragments as foundations for understanding target space and activity prediction
    • Sutherland, J. J.; Higgs, R. E.; Watson, I.; Vieth, M. Chemical Fragments as Foundations for Understanding Target Space and Activity Prediction J. Med. Chem. 2008, 51, 2689-2700
    • (2008) J. Med. Chem. , vol.51 , pp. 2689-2700
    • Sutherland, J.J.1    Higgs, R.E.2    Watson, I.3    Vieth, M.4
  • 14
    • 33846871027 scopus 로고    scopus 로고
    • The scaffold tree - Visualization of the scaffold universe by hierarchical scaffold classification
    • Schuffenhauer, A.; Ertl, P.; Roggo, S.; Wetzel, S.; Koch, M. A.; Waldmann, H. The scaffold tree - visualization of the scaffold universe by hierarchical scaffold classification J. Chem. Inf. Model. 2007, 47, 47-58
    • (2007) J. Chem. Inf. Model. , vol.47 , pp. 47-58
    • Schuffenhauer, A.1    Ertl, P.2    Roggo, S.3    Wetzel, S.4    Koch, M.A.5    Waldmann, H.6
  • 16
    • 33845736461 scopus 로고    scopus 로고
    • Drugs in other drugs: A new look at drugs as fragments
    • Siegel, M. G.; Vieth, M. Drugs in Other Drugs: A New Look at Drugs as Fragments Drug Discovery Today 2007, 12, 71-79
    • (2007) Drug Discovery Today , vol.12 , pp. 71-79
    • Siegel, M.G.1    Vieth, M.2
  • 17
    • 35448947271 scopus 로고    scopus 로고
    • Computational techniques in fragment-based drug discovery
    • Villar, H. O.; Hansen, M. R. Computational Techniques in Fragment-Based Drug Discovery Curr. Top. Med. Chem. 2007, 7, 1509-1513
    • (2007) Curr. Top. Med. Chem. , vol.7 , pp. 1509-1513
    • Villar, H.O.1    Hansen, M.R.2
  • 18
    • 46849089254 scopus 로고    scopus 로고
    • Recent developments in fragment-based drug discovery
    • Congreve, M.; Chessari, G.; Tisi, D.; Woodhead, A. J. Recent Developments in Fragment-based Drug Discovery J. Med. Chem. 2008, 51, 3661-3680
    • (2008) J. Med. Chem. , vol.51 , pp. 3661-3680
    • Congreve, M.1    Chessari, G.2    Tisi, D.3    Woodhead, A.J.4
  • 20
    • 0037366605 scopus 로고    scopus 로고
    • The combinatorial synthesis of bicyclic privileged structures or privileged substructures
    • Horton, D. A.; Bourne, G. T.; Smythe, M. L. The Combinatorial Synthesis of Bicyclic Privileged Structures or Privileged Substructures Chem. Rev. 2003, 103, 893-930
    • (2003) Chem. Rev. , vol.103 , pp. 893-930
    • Horton, D.A.1    Bourne, G.T.2    Smythe, M.L.3
  • 21
    • 33644872086 scopus 로고    scopus 로고
    • Privileged substructures as leads in medicinal chemistry
    • Constantino, L.; Barlocco, D. Privileged Substructures as Leads in Medicinal Chemistry Curr. Med. Chem. 2006, 13, 65-85
    • (2006) Curr. Med. Chem. , vol.13 , pp. 65-85
    • Constantino, L.1    Barlocco, D.2
  • 22
    • 33645422011 scopus 로고    scopus 로고
    • Are target-family-privileged substructures truly privileged
    • Schnur, D. M.; Hermsmeier, M. A.; Tebben, A. J. Are Target-Family- Privileged Substructures Truly Privileged J. Med. Chem. 2006, 49, 2000-2009
    • (2006) J. Med. Chem. , vol.49 , pp. 2000-2009
    • Schnur, D.M.1    Hermsmeier, M.A.2    Tebben, A.J.3
  • 23
    • 77249139237 scopus 로고    scopus 로고
    • Systematic analysis of public domain compound potency data identifies selective molecular scaffolds across druggable target families
    • Hu, Y.; Wassermann, A. M.; Lounkine, E.; Bajorath, J. Systematic Analysis of Public Domain Compound Potency Data Identifies Selective Molecular Scaffolds across Druggable Target Families J. Med. Chem. 2010, 53, 752-758
    • (2010) J. Med. Chem. , vol.53 , pp. 752-758
    • Hu, Y.1    Wassermann, A.M.2    Lounkine, E.3    Bajorath, J.4
  • 24
    • 77956634295 scopus 로고    scopus 로고
    • Exploring target-selectivity patterns of molecular scaffolds
    • [Online] DOI: 10.1021/ml900024v
    • Hu, Y.; Bajorath, J. Exploring Target-Selectivity Patterns of Molecular Scaffolds. ACS Med. Chem. Lett. [Online] DOI: 10.1021/ml900024v.
    • ACS Med. Chem. Lett.
    • Hu, Y.1    Bajorath, J.2
  • 25
    • 33846108633 scopus 로고    scopus 로고
    • BindingDB: A web-accessible database of experimentally determined protein-ligand binding affinities
    • Liu, T.; Lin, Y.; Wen, X.; Jorissen, R. N.; Gilson, M. K. BindingDB: a Web-Accessible Database of Experimentally Determined Protein-Ligand Binding Affinities Nucleic Acids Res. 2007, 35, D198-D201
    • (2007) Nucleic Acids Res. , vol.35
    • Liu, T.1    Lin, Y.2    Wen, X.3    Jorissen, R.N.4    Gilson, M.K.5
  • 26
    • 77952005489 scopus 로고    scopus 로고
    • PubChem. (accessed October 1)
    • PubChem. http://pubchem.ncbi.nlm.nih.gov/ (accessed October 1, 2009).
    • (2009)
  • 27
    • 33746931581 scopus 로고    scopus 로고
    • On outliers and activity cliffs - Why QSAR often disappoints
    • Maggiora, G. M. On Outliers and Activity Cliffs-Why QSAR Often Disappoints J. Chem. Inf. Model. 2006, 46, 1535
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 1535
    • Maggiora, G.M.1
  • 29
    • 73449112311 scopus 로고    scopus 로고
    • From structure-activity to structure-selectivity relationships: Quantitative assessment, selectivity cliffs, and key compounds
    • Peltason, L.; Hu, Y.; Bajorath, J. From Structure-Activity to Structure-Selectivity Relationships: Quantitative Assessment, Selectivity Cliffs, and Key Compounds ChemMedChem 2009, 4, 1864-1873
    • (2009) ChemMedChem , vol.4 , pp. 1864-1873
    • Peltason, L.1    Hu, Y.2    Bajorath, J.3
  • 30
    • 77951991149 scopus 로고    scopus 로고
    • ChemblDB. (accessed January 2)
    • ChemblDB. http://www.ebi.ac.uk/chembl/ (accessed January 2, 2010).
    • (2010)
  • 31
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • Weininger, D. SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules J. Chem. Inf. Comput. Sci. 1988, 28, 31-36
    • (1988) J. Chem. Inf. Comput. Sci. , vol.28 , pp. 31-36
    • Weininger, D.1
  • 33
    • 53549123322 scopus 로고    scopus 로고
    • Structure-activity relationship anatomy by network-like similarity graphs and local structure-activity relationship indices
    • Wawer, M.; Peltason, L.; Weskamp, N.; Teckentrup, A.; Bajorath, J. Structure-Activity Relationship Anatomy by Network-Like Similarity Graphs and Local Structure-Activity Relationship Indices J. Med. Chem. 2008, 51, 6075-6084
    • (2008) J. Med. Chem. , vol.51 , pp. 6075-6084
    • Wawer, M.1    Peltason, L.2    Weskamp, N.3    Teckentrup, A.4    Bajorath, J.5
  • 34
    • 2042489375 scopus 로고    scopus 로고
    • Symyx Software: San Ramon, CA
    • MACCS Structural Keys; Symyx Software: San Ramon, CA, 2005.
    • (2005) MACCS Structural Keys
  • 36
    • 54249156879 scopus 로고    scopus 로고
    • Student ed., version 6.1; Accelrys, Inc.: San Diego, CA
    • Scitegic Pipeline Pilot, Student ed., version 6.1; Accelrys, Inc.: San Diego, CA, 2007.
    • (2007) Scitegic Pipeline Pilot


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.