Phylogenetic relationships among Daldinia, Entonaema, and Hypoxylon as inferred from ITS nrDNA analyses of Xylariales

Nova Hedwigia

Volumn 80, Issue 1-2, 2005, Pages 25-43

  Triebel, Dagmar ^a   Peršoh, Derek ^b   Wollweber, Hartmund ^c   Stadler, Marc ^c,d  

^a BAVARIAN NATURAL HISTORY COLLECTIONS   (Germany)

^b UNIVERSITY OF BAYREUTH   (Germany)

^c Mykologische Sektion   (Germany)

^d BAYER PHARMA AG   (Germany)

Author keywords

Daldinia; Entonaema; Hypoxylon; ITS nrDNA analyses; Nodulisporium; Xylariales

Indexed keywords

AMPHISPHAERIACEAE; ANNULOHYPOXYLON COHAERENS; ANNULOHYPOXYLON MULTIFORME; APIOSPORACEAE; DALDINIA; DIATRYPACEAE; ENTOLEUCA; ENTONAEMA; GENICULOSPORIUM; HYPONECTRIACEAE; HYPOXYLON; HYPOXYLON FRAGIFORME; HYPOXYLON FUSCUM; KRETZSCHMARIA; NEMANIA; NODULISPORIUM; ROSELLINIA; XYLARIA; XYLARIACEAE; XYLARIALES;

EID: 23044467069     PISSN: 00295035     EISSN: None     Source Type: Journal    
DOI: 10.1127/0029-5035/2005/0080-0025     Document Type: Review

References (54)

1. COLLADO, J., G. PLATAS & F. PELAÉZ (2001): Identification of an endophytic Nodulisporium sp. from Quercus ilex in central Spain as the anamorph of Biscogniauxia mediterranea by rDNA sequence analysis and effect of different ecological factors on distribution of the fungus. - Mycologia 93: 875-886.
2. ENGEL, P., B. FARTMANN, K. NIKOLEIT & K. REHFELDT (1999): Sequencing Brochure. 4th edn. - MWG-Biotech AG.
3. ERIKSSON, O.E., H.-O. BARAL, R.S. CURRAH, K. HANSEN, C.P. KURTZMAN, G. RAMBOLD & T. LÆSØE (eds.) (2004): Outline of Ascomycota - 2004. - Myconet 10:1-99.
4. FRIEDL, T. (1996): Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure. - Phycologia 35: 456-469.
5. GARGAS, A. & J.W. TAYLOR (1992): Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi. - Mycologia 84: 589-592.
6. GRANMO, A. (1999): Morphotaxonomy and chorology of the genus Hypoxylon (Xylariaceae) in Norway. - Sommerfeltia 26: 1-81.
7. GUO, L.D., K.D. HYDE & E.C.Y. LIEW (2000): Identification of endophytic fungi from Livistona chinensis based on morphology and rDNA sequences. - New Phytol. 147: 617-630.
8. HAWKSWORTH, D.L. (1977): Rhopalostroma, a new genus in the Xylariaceae s.l. - Kew Bull. 31: 421-431.
9. HAWKSWORTH, D.L. & A.J.S. WHALLEY (1985): A new species of Rhopalostroma with a nodulisporium-like anamorph from Thailand. - Trans. Brit. Mycol. Soc. 84: 560-562.
10. HUSS, V.A.R., C. FRANK, E.C. HARTMANN, M. HIRMER, A. KLOBOUCEK, B.M. SEIDEL, P. WENZELER & E. KESSLER (1999): Biochemical taxonomy and molecular phylogeny of the genus Chlorella sensu lato (Chlorophyta). - J. Phycol. 35: 587-598.
11. JOHANNESSON, H., T. LÆSSØE & J. STENLID (2000): Molecular and morphological investigation of the genus Daldinia in Northern Europe. - Mycol. Res. 104: 275-280.
12. JU, Y.-M. & J.D. ROGERS (1996): A revision of the genus Hypoxylon. - Mycologia Memoir no. 20. APS Press, St. Paul, MN., USA.
13. JU, Y.-M. & J.D. ROGERS (2002): The genus Nemania (Xylariaceae). - Nova Hedwigia 74: 75-120.
14. JU, Y.-M., J.D. ROGERS & F. SAN MARTÍN (1997): A revision of the genus Daldinia. - Mycotaxon 61: 243-293
15. JU, Y.-M., J.D. ROGERS, F. SAN MARTÍN & A. GRANMO (1998): The genus Biscogniauxia. - Mycotaxon 66: 1-98.
16. JU, Y.-M., F. SAN MARTÍN GONZÁLEZ & J.D. ROGERS (1993): Three xylariaceous fungi with scolecosporous conidia. - Mycotaxon 47: 219-228.
17. JU, Y.-M., VASILYEVA, L. & ROGERS, J.D. (1999): Daldinia singularis, sp. nov. from Eastern Russia, and notes on some other taxa. - Mycotaxon 71: 405-412.
18. KIRK, P.M., P.F. CANNON, J.A. DAVID & J.A. STALPERS (eds.) (2001): Ainsworth & Bisby's Dictionary of the Fungi. Ninth Edition. - CAB International, Egham UK.
19. LÆSSØE, T. (1994): Index ascomycetum 1. Xylariaceae. - Syst. Ascomycetum 13: 43-112.
20. LÆSSØE, T., J.D. ROGERS & A.J.S. WHALLEY (1989): Camillea, Jongiella and light-spored species of Hypoxylon. - Mycol. Res. 93: 121-155.
21. LEE, S.-L., S. KO & H.-S. JUNG (2000): Phylogenetic analysis of Xylaria based on nuclear ribosomal ITS1-5.8S-ITS2 sequences. - F. E. M. S. Microbiol. Lett. 187: 89-93.
22. MAZZAGLIA, H., N. ANSELMI, S. VICARIO & A. VANNINI (2001): Sequence analysis of the 5.8S rDNA and ITS region in evaluating genetic relationships among some species of Hypoxylon and related genera. - Mycol. Res. 105: 670-675.
23. MÜHLBAUER, A., D. TRIEBEL, D. PERŠOH, H. WOLLWEBER, S. SEIP & M. STADLER (2002): Macrocarpones, novel metabolites from stromata of Hypoxylon macrocarpum, and new evidence on the chemotaxonomy of Hypoxylon species. - Mycol. Progr. 1: 235-248.
24. PERŠOH, D. & G. RAMBOLD (2002): Phacopsis - a lichenicolous genus of the family Parmeliaceae. - Mycol. Progr. 1: 43-56.
25. PETRINI, L.E. (1992): Rosellinia species of the temperate zones. - Sydowia 44: 169-281.
26. PETRINI, L.E. & E. MÜLLER (1986): Haupt- und Nebenfruchtformen europäischer Hypoxylon-Arten (Xylariaceae, Sphaeriales) und verwandter Pilze. - Mycol. Helv. 1: 501-627.
27. PETRINI, L.E., O. PETRINI & T.N. SIEBER (1987): Host specificity of Hypoxylon fuscum: A statistical approach to the problem. - Sydowia 40: 227-234.
28. POLISHOOK, J.D., J.B. ONDEYKA, A.W. DOMBROWSKI, F. PELÁEZ, G. PLATAS & A.M. TERAN (2001): Biogeography and relatedness of Nodulisporium strains producing nodulisporic acid. - Mycologia 93: 1125-1137.
29. QUANG, D.N, T. HASHIMOTO, M. TANAKA, M. BAUMGARTNER, M. STADLER & Y. ASAKAWA (2002): Chemical constituents of the ascomycete Daldinia concentrica. - J. Nat. Prod. (Lloydia) 65: 1869-1874.
30. QUANG D.N., T. HASHIMOTO, M. TANAKA, M. STADLER & Y. ASAKAWA (2004): Cyclic azaphilones daldinins E and F from the ascomycete fungus Hypoxylon fuscum (Xylariaceae). - Phytochemistry, 65: 469-472.
31. ROGERS, J.D. (1982): Entonaema liquescens: description of the anamorph and thoughts on its systematic position. - Mycotaxon 15: 500-506.
32. ROGERS, J.D. (1985): Anamorphs of Xylaria: Taxonomic considerations. - Sydowia 38: 255-262.
33. ROGERS, J.D. (2000): Thoughts and musings about tropical Xylariaceae. - Mycol. Res. 104: 1412-1420.
34. ROGERS, J.D. & Y.-M. JU (1996): Entoleuca mammata comb. nov. for Hypoxylon mammatum and the genus Entoleuca. - Mycotaxon 59: 441-448.
35. ROGERS, J.D. & Y.-M. JU (1998): The genus Kretzschmaria. - Mycotaxon 68: 345-393.
36. ROGERS, J.D., Y.-M. JU & F. SAN MARTÍN (1997): Jumillera and Whalleya, new genera segregated from Biscogniauxia. - Mycotaxon 64: 39-50.
37. ROGERS, J.D., Y.-M. JU, R. WATLING & A.J.S. WHALLEY (1999): A reinterpretation of Daldinia concentrica based upon a recently discovered specimen. - Mycotaxon 72: 507-519.
38. SÁNCHEZ-BALLESTEROS, J., V. GONZÁLEZ, O. SALAZAR, J. ACERO, M.A. PORTAL, M. JULIÁN, V. RUBIO, G.F. BILLS, J.D. POLISHOOK, G. PLATAS, S. MOCHALES & F. PELÁEZ (2000): Phylogenetic study of Hypoxylon and related genera based on ribosomal ITS sequences. - Mycologia 92: 964-977.
39. SEIFERT, K.A., W. GAMS & G. LOUIS-SEIZE (2002): Arthroxylaria elegans, a new coprophilous anamorphic fungus allied with the Xylariaceae, with the notes on the genus Bisporostilbella. - Czech Mycol. 53: 297-307.
40. STADLER, M., M. BAUMGARTNER & H. WOLLWEBER (2001a): Three new Daldinia species with yellow stromatal pigments. - Mycotaxon 80: 179-196.
41. STADLER, M., M. BAUMGARTNER, H. WOLLWEBER, J.D. ROGERS & Y.-M. JU (2001b): Daldinia decipiens sp. nov. and notes on some other European Daldinia species inhabiting Betulaceae. - Mycotaxon 80: 167-177.
42. STADLER, M., M. BAUMGARTNER, T. GROTHE, A. MÜHLBAUER, S. SEIP & H. WOLLWEBER (2001c): Concentricol, a taxonomically significant triterpenoid from Daldinia concentrica. - Phytochemistry 56: 787-793.
43. STADLER, M., M. BAUMGARTNER, K. IDE, A. POPP & H. WOLLWEBER (2002): Importance of ascospore ornamentation in the taxonomy of Daldinia. - Mycol. Progr. 1: 31-42.
44. STADLER, M., Y.-M. JU & J.D. ROGERS (2004a): Chemotaxonomy of Entonaema, Rhopalostroma and other Xylariaceae. - Mycol. Res. 108: 239-256.
45. STADLER, M., H. WOLLWEBER, A. MÜHLBAUER, T. HENKEL, Y. ASAKAWA, T. HASHIMOTO, J.D. ROGERS, Y.-M. JU, H.-G. WETZSTEIN &, H.-V. TICHY (2001d): Secondary metabolite profiles, genetic fingerprints and taxonomy of Daldinia and allies. - Mycotaxon 77: 379-429.
46. STADLER, M., H. WOLLWEBER, A. MÜHLBAUER, Y. ASAKAWA, T. HASHIMOTO, J.D. ROGERS, Y.-M. JU, H.-G. WETZSTEIN & H.-V. TICHY (2001e): Molecular chemotaxonomy of Daldinia and other Xylariaceae. - Mycol. Res. 105: 1191-1205.
47. STADLER, M., H. WOLLWEBER, W. JÄGER, M. BRIEGERT, G. VENTURELLA, J.M. CASTRO & H.-V. TICHY (2004b): Cryptic species related to Daldinia concentrica and D. eschscholzii, with notes on D. bakeri. - Mycol. Res. 108: 257-273.
48. SWOFFORD, D.L. (2001): PAUP*. Phylogenetic analyses Using Parsimony (* and other methods). Version 4.0b8. - Sinauer Associates, Sunderland, MA.
49. WHALLEY, A.J.S. (1996): The xylariaceous way of life. - Mycol. Res. 100: 897-922.
50. WHALLEY, A.J.S & R.L. EDWARDS (1995): Secondary metabolites and systematic arrangement within the Xylariaceae. - Canad. J. Bot. 73, Suppl.1: S802-S810.
51. WHALLEY, A.J.S. & R. WATLING (1980): Daldinia concentrica vs. Daldinia vernicosa. - Trans. Brit. Mycol. Soc. 74: 399-406.
52. WHITE, T.J., T.D. BRUNS, S.B. LEE & J.W. TAYLOR (1990): Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. - In INNIS, M.A., D.H. GELFAND & T. WHITE (eds): PCR protocols, a guide to methods and applications: 315-322. San Diego.
53. WOLLWEBER, H. & STADLER, M. (2001): Zur Kenntnis der Gattung Daldinia in Deutschland und Europa. - Z. Mykol. 67: 3-53.
54. WORAPONG, J., G. STROBEL, G. FORD, J.-Y. LI, G. BAIRD & W.M. HESS (2001): Muscodor albus anam. gen. et sp. nov., an endophyte from Cinnamomum zeylanicum. - Mycotaxon 79: 67-79.