Corchorus yellow vein virus, a New World geminivirus from the Old World

Journal of General Virology

Volumn 87, Issue 4, 2006, Pages 997-1003

  Ha, Cuong ^a   Coombs, Steven ^a   Revill, Peter ^a,c   Harding, Rob ^a   Vu, Man ^b   Dale, James ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^b VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE   (Viet Nam)

^c VICTORIAN INFECTIOUS DISEASES REFERENCE LABORATORY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

DNA A; DNA B;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; CORCHORUS; DNA REPLICATION; GEMINIVIRUS; GENE EXPRESSION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS IDENTIFICATION; YELLOW VEIN VIRUS;

AMERICAS; AMINO ACID SEQUENCE; BASE SEQUENCE; CAPSID PROTEINS; CORCHORUS; DNA REPLICATION; GEMINIVIRIDAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VIETNAM;

BEGOMOVIRUS; CORCHORUS; CORCHORUS CAPSULARIS; GEMINIVIRIDAE;

EID: 33645549644     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81631-0     Document Type: Article

References (26)

1. Arguello-Astorga, G. R., Guevara-Gonzalez, R. G., Herrera-Estrella, L. R. & Rivera-Bustamante, R. F. (1994). Geminivirus replication origins have a group-specific organization of iterative elements: a model for replication. Virology 203, 90-100.
2. Bateson, M. F., Lines, R. E., Revill, P., Chaleeprom, W., He, C. V., Gibbs, A. J. & Dale, J. L. (2002). On the evolution and molecular epidemiology of the potyvirus Papaya ringspot virus. J Gen Virol 83, 2575-2585.
3. Bell, K. E., Dale, J. L., Ha, C. V., Vu, M. T. & Revill, P. A. (2002). Characterisation of Rep-encoding components associated with banana bunchy top nanovirus in Vietnam. Arch Virol 147, 695-707.
4. Brown, J. K., Idris, A. M., Torres-Jerez, I., Banks, G. K. & Wyatt S. D. (2001). The core region of the coat protein gene is highly useful for establishing the provisional identification and classification of begomoviruses. Arch Virol 146, 1581-1598.
5. Chakraborty, S., Pandey, P. K., Banerjee, M. K., Kalloo, G. & Fauquet, C. M. (2003). Tomato leaf curl Gujarat virus, a new Begomovirus species causing a severe leaf curl disease of tomato in Varanasi, India. Phytopathology 93, 1485-1495.
6. Czosnek, H. & Laterrot, H. (1997). A worldwide survey of tomato yellow leaf curl viruses. Arch Virol 142, 1391-1406.
7. Dugdale, B., Beetham, P. R., Becker, D. K., Harding, R. M. & Dale, J. L. (1998). Promoter activity associated with the intergenic regions of banana bunchy top virus DNA-1 to -6 in transgenic tobacco and banana cells. J Gen Virol 79, 2301-2311.
8. Fontes, E. P., Gladfelter, H. J., Schaffer, R. L., Petty, I. T. & Hanley-Bowdoin, L. (1994). Geminivirus replication origins have a modular organization. Plant Cell 6, 405-416.
9. Hanley-Bowdoin, L., Settlage, S. B., Orozco, B. M., Nagar, S. & Robertson, D. (1999). Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. CRC Crit Rev Plant Sci 18, 71-106.
10. Harrison, B. D., Swanson, M. M. & Fargette, D. (2002). Begomovirus coat protein: serology, variation and functions. Physiol Mol Plant Pathol 60, 257-271.
11. Idris, A. M. & Brown, J. K. (2004). Cotton leaf crumple virus is a distinct Western Hemisphere begomovirus species with complex evolutionary relationships indicative of recombination and reassortment. Phytopathology 94, 1068-1074.
12. Laufs, J., Traut, W., Heyraud, F., Matzeit, V., Rogers, S. G., Schell, J. & Gronenborn, B. (1995). In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc Natl Acad Sci U S A 92, 3879-3883.
13. Lyttle, D. J. & Guy, P. L. (2004). First record of Geminiviruses in New Zealand: Abutilon mosaic virus and Honeysuckle yellow vein virus. Aust Plant Pathol 33, 321-322.
14. Orozco, B. M., Gladfelter, H. J., Settlage, S. B., Eagle, P. A., Gentry, R. N. & Hanley-Bowdoin, L. (1998). Multiple cis elements contribute to geminivirus origin function. Virology 242, 346-356.
15. Padidam, M., Sawyer, S. & Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225.
16. Page, R. D. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
17. Paximadis, M., Idris, A. M., Torres-Jerez, I., Villarreal, A., Rey, M. E. & Brown, J. K. (1999). Characterization of tobacco geminiviruses in the Old and New World. Arch Virol 144, 703-717.
18. Polston, J. E., McGovern, R. J. & Brown, L. G. (1999). Introduction of tomato yellow leaf curl virus in Florida and implications for the spread of this and other geminiviruses of tomato. Plant Dis 83, 984-988.
19. Revill, P. A., Ha, C. V., Porchun, S. C., Vu, M. T. & Dale, J. L. (2003). The complete nucleotide sequence of two distinct geminiviruses infecting cucurbits in Vietnam. Arch Virol 148, 1523-1541.
20. Rojas, M. R., Gilbertson, R. L., Russell, D. R. & Maxwell, D. P. (1993). Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77, 340-347.
21. Rybicki, E. P. (1994). A phylogenetic and evolutionary justification for three genera of Geminiviridae. Arch Virol 139, 49-77.
22. Stanley, J. (1995). Analysis of African cassava mosaic virus recombinants suggests strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication. Virology 206, 707-712.
23. Stanley, J., Bisaro, D. M., Briddon, R. W., Brown, J. K., Fauquet, C. M., Harrison, B. D., Rybicki, E. P. & Stenger, D. C. (2005). Geminiviridae. In Virus Taxonomy. VIIIth Report of the International Committee on Taxonomy of Viruses, pp. 301-326. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. London: Elsevier/Academic Press.
24. Stewart, C. N., Jr & Via, L. E. (1993). A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques 14, 748-750.
25. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
26. Wyatt, S. D. & Brown, J. K. (1996). Detection of subgroup III gemini-virus isolates in leaf extracts by degenerate primers and polymerase chain reaction. Phytopathology 86, 1288-1293.