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Volumn 94, Issue 2, 2010, Pages 204-211

Use of quantitative real-time PCR to assess the in vitro survival of specific DNA gene sequences of rumen microbes under simulated abomasal conditions

Author keywords

DNA sequences; Microbial markers; Real time PCR; Rumen microbes

Indexed keywords

BIOLOGICAL MARKER; DNA;

EID: 77951961612     PISSN: 09312439     EISSN: 14390396     Source Type: Journal    
DOI: 10.1111/j.1439-0396.2008.00901.x     Document Type: Article
Times cited : (8)

References (33)
  • 1
    • 77951967362 scopus 로고    scopus 로고
    • Persistence of DNA sequences of rumen microbes in the intestine and their potential as microbial markers in milk-fed, at weaning, and finished lambs in an intensive system
    • 2008, in preparation
    • Belanche A, Balcells J, Yañez-Ruíz D R, Newbold C J, de la Fuente G, Calleja L. Persistence of DNA sequences of rumen microbes in the intestine and their potential as microbial markers in milk-fed, at weaning, and finished lambs in an intensive system. Animal 2008, in preparation
    • Animal
    • Belanche, A.1    Balcells, J.2    Yañez-Ruíz, D.R.3    Newbold, C.J.4    de la Fuente, G.5    Calleja, L.6
  • 2
    • 10044257860 scopus 로고    scopus 로고
    • Quantitative determination of rumen ciliate protozoal biomass with real-time PCR
    • Bergen W G. Quantitative determination of rumen ciliate protozoal biomass with real-time PCR. Journal of Nutrition 2004, 134:3223-3224.
    • (2004) Journal of Nutrition , vol.134 , pp. 3223-3224
    • Bergen, W.G.1
  • 3
    • 0026919883 scopus 로고
    • Markers for quantifying microbial protein synthesis in the rumen
    • Broderick G A, Merchen N R. Markers for quantifying microbial protein synthesis in the rumen. Journal of Dairy Science 1992, 75:2618-2632.
    • (1992) Journal of Dairy Science , vol.75 , pp. 2618-2632
    • Broderick, G.A.1    Merchen, N.R.2
  • 4
    • 0030156659 scopus 로고    scopus 로고
    • Comparison of nitrogen-15 and purines as microbial cultures in continuous cultures
    • Calsamiglia S, Stern M D, Firkins J L. Comparison of nitrogen-15 and purines as microbial cultures in continuous cultures. Journal of Animal Science 1996, 74:1375-1381.
    • (1996) Journal of Animal Science , vol.74 , pp. 1375-1381
    • Calsamiglia, S.1    Stern, M.D.2    Firkins, J.L.3
  • 5
    • 0025489744 scopus 로고
    • Composition of ruminal bacteria harvested from steers as influenced by dietary energy level, feeding frequency, and isolation techniques
    • Cecava M J, Merchen N R, Gay L C, Berger L L. Composition of ruminal bacteria harvested from steers as influenced by dietary energy level, feeding frequency, and isolation techniques. Journal of Dairy Science 1990, 73:2480-2488.
    • (1990) Journal of Dairy Science , vol.73 , pp. 2480-2488
    • Cecava, M.J.1    Merchen, N.R.2    Gay, L.C.3    Berger, L.L.4
  • 8
    • 0001130738 scopus 로고
    • The engulfment and digestion of mixed rumen bacteria and individual bacterial species by single and mixed species of rumen ciliate protozoa grown in vivo
    • Coleman G S, Sandford D C. The engulfment and digestion of mixed rumen bacteria and individual bacterial species by single and mixed species of rumen ciliate protozoa grown in vivo. Journal of Agricultural Science 1979, 92:729-742.
    • (1979) Journal of Agricultural Science , vol.92 , pp. 729-742
    • Coleman, G.S.1    Sandford, D.C.2
  • 12
    • 0030034230 scopus 로고    scopus 로고
    • Caco-2 cell iron uptake from meat and casein digests parallels in vivo studies: use of a novel in vitro method for rapid estimation of iron bioavailability
    • Glahn R P, Wien E M, Van Campen D R, Miller D D. Caco-2 cell iron uptake from meat and casein digests parallels in vivo studies: use of a novel in vitro method for rapid estimation of iron bioavailability. Journal of Nutrition 1996, 126:332-339.
    • (1996) Journal of Nutrition , vol.126 , pp. 332-339
    • Glahn, R.P.1    Wien, E.M.2    Van Campen, D.R.3    Miller, D.D.4
  • 13
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2ΔΔCt method
    • Kenneth J L, Schmittgen T D. Analysis of relative gene expression data using real-time quantitative PCR and the 2ΔΔCt method. Applied Biosystems Communication Methods 2001, 25:402-408.
    • (2001) Applied Biosystems Communication Methods , vol.25 , pp. 402-408
    • Kenneth, J.L.1    Schmittgen, T.D.2
  • 14
    • 0035856590 scopus 로고    scopus 로고
    • Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens
    • Koike S, Kobayashi Y. Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiology Letters 2001, 204:361-366.
    • (2001) FEMS Microbiology Letters , vol.204 , pp. 361-366
    • Koike, S.1    Kobayashi, Y.2
  • 16
    • 0034736252 scopus 로고    scopus 로고
    • Influence of dietary rumen-degradable protein supply on rumen characteristics and carbohydrate fermentation in beef cattle offered high-grain diets
    • Martín-Orue S M, Balcells J, Vicente F, Castrillo C. Influence of dietary rumen-degradable protein supply on rumen characteristics and carbohydrate fermentation in beef cattle offered high-grain diets. Animal Feed Science and Technology 2000, 88:59-77.
    • (2000) Animal Feed Science and Technology , vol.88 , pp. 59-77
    • Martín-Orue, S.M.1    Balcells, J.2    Vicente, F.3    Castrillo, C.4
  • 18
    • 0017344255 scopus 로고
    • Degradation of DNA by nucleases in intestinal tract of rats
    • Maturin L, Curtiss R. Degradation of DNA by nucleases in intestinal tract of rats. Science 1977, 196:216-218.
    • (1977) Science , vol.196 , pp. 216-218
    • Maturin, L.1    Curtiss, R.2
  • 19
    • 0019042761 scopus 로고
    • The degradation of nucleic acids in, and the removal of breakdown products from the small intestines of steers
    • McAllan A B. The degradation of nucleic acids in, and the removal of breakdown products from the small intestines of steers. British Journal of Nutrition 1980, 44:99-112.
    • (1980) British Journal of Nutrition , vol.44 , pp. 99-112
    • McAllan, A.B.1
  • 20
    • 0015832954 scopus 로고
    • Degradation of nucleic acid derivatives by rumen bacteria in vitro
    • McAllan A B, Smith R H. Degradation of nucleic acid derivatives by rumen bacteria in vitro. British Journal of Nutrition 1973, 29:467-474.
    • (1973) British Journal of Nutrition , vol.29 , pp. 467-474
    • McAllan, A.B.1    Smith, R.H.2
  • 21
    • 0021215681 scopus 로고
    • The efficiency of microbial protein synthesis in the rumen and the degradability of feed nitrogen between the mouth and abomasum in steers given different diets
    • McAllan A B, Smith R H. The efficiency of microbial protein synthesis in the rumen and the degradability of feed nitrogen between the mouth and abomasum in steers given different diets. British Journal of Nutrition 1984, 51:77-83.
    • (1984) British Journal of Nutrition , vol.51 , pp. 77-83
    • McAllan, A.B.1    Smith, R.H.2
  • 22
    • 0030025787 scopus 로고    scopus 로고
    • Determination of rumen microbial-nitrogen production in sheep: a comparison of urinary purine excretion with methods using 15N and purine bases as markers of microbial-nitrogen entering the duodenum
    • Perez J F, Balcells J, Guada J A, Castrillo C. Determination of rumen microbial-nitrogen production in sheep: a comparison of urinary purine excretion with methods using 15N and purine bases as markers of microbial-nitrogen entering the duodenum. British Journal of Nutrition 1996, 75:699-709.
    • (1996) British Journal of Nutrition , vol.75 , pp. 699-709
    • Perez, J.F.1    Balcells, J.2    Guada, J.A.3    Castrillo, C.4
  • 24
    • 0004053615 scopus 로고
    • Harper and Row Publishers, NY
    • Raw J. Biochemistry 1983, Harper and Row Publishers, NY
    • (1983) Biochemistry
    • Raw, J.1
  • 26
    • 0028296269 scopus 로고
    • Ingested foreign (phage M13) DNA survives transiently in the gastrointestinal tract and enters the blood stream of mice
    • Schubbert R, Lettmann C, Doerfler W. Ingested foreign (phage M13) DNA survives transiently in the gastrointestinal tract and enters the blood stream of mice. Molecular and General Genetics 1994, 242:495-504.
    • (1994) Molecular and General Genetics , vol.242 , pp. 495-504
    • Schubbert, R.1    Lettmann, C.2    Doerfler, W.3
  • 27
    • 0031029854 scopus 로고    scopus 로고
    • Foreign (M13) DNA ingested by mice reaches peripheral leukocytes, spleen, and liver via the intestinal wall mucosa and can be covalently linked to mouse DNA
    • Schubbert R, Renz D, Schmitz B, Doerfler W. Foreign (M13) DNA ingested by mice reaches peripheral leukocytes, spleen, and liver via the intestinal wall mucosa and can be covalently linked to mouse DNA. Proceedings of the National Academy of Sciences of the United States of America 1997, 94:961-966.
    • (1997) Proceedings of the National Academy of Sciences of the United States of America , vol.94 , pp. 961-966
    • Schubbert, R.1    Renz, D.2    Schmitz, B.3    Doerfler, W.4
  • 28
    • 10044284420 scopus 로고    scopus 로고
    • Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR
    • Sylvester J T, Karnati S K R, Yu Z T, Morrison M, Firkins J L. Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR. Journal of Nutrition 2004, 134:3378-3384.
    • (2004) Journal of Nutrition , vol.134 , pp. 3378-3384
    • Sylvester, J.T.1    Karnati, S.K.R.2    Yu, Z.T.3    Morrison, M.4    Firkins, J.L.5
  • 29
    • 26444519840 scopus 로고    scopus 로고
    • Evaluation of a real-time PCR assay quantifying the ruminal pool size and duodenal flow of protozoal nitrogen
    • Sylvester J T, Karnati S K R, Yu Z, Newbold C J, Firkins J L. Evaluation of a real-time PCR assay quantifying the ruminal pool size and duodenal flow of protozoal nitrogen. Journal of Dairy Science 2005, 88:2083-2095.
    • (2005) Journal of Dairy Science , vol.88 , pp. 2083-2095
    • Sylvester, J.T.1    Karnati, S.K.R.2    Yu, Z.3    Newbold, C.J.4    Firkins, J.L.5
  • 31
    • 0033474368 scopus 로고    scopus 로고
    • Chemical composition of protozoal and bacterial fractions isolated from ruminal contents of dairy cows fed diets differing in nitrogen supplementation
    • Volden H, Mydland L T, Harstad O M. Chemical composition of protozoal and bacterial fractions isolated from ruminal contents of dairy cows fed diets differing in nitrogen supplementation. Acta Agriculturae Scandinavica. Section A, Animal Science 1999, 49:235-244.
    • (1999) Acta Agriculturae Scandinavica. Section A, Animal Science , vol.49 , pp. 235-244
    • Volden, H.1    Mydland, L.T.2    Harstad, O.M.3
  • 32
    • 1042278881 scopus 로고    scopus 로고
    • Persistence of DNA studied in different ex vivo and in vivo rat models simulating the human gut situation
    • Wilcks A, van Hoek A H, Joosten R G, Jacobsen B B, Aarts H J. Persistence of DNA studied in different ex vivo and in vivo rat models simulating the human gut situation. Food and Chemical Toxicology 2004, 42:493-502.
    • (2004) Food and Chemical Toxicology , vol.42 , pp. 493-502
    • Wilcks, A.1    van Hoek, A.H.2    Joosten, R.G.3    Jacobsen, B.B.4    Aarts, H.J.5
  • 33
    • 33947416096 scopus 로고    scopus 로고
    • Contribution of rumen protozoa to duodenal flow of nitrogen, conjugated linoleic acid and vaccenic acid in steers fed silages differing in their water-soluble carbohydrate content
    • Yáñez-Ruiz D R, Scollan N D, Merry R J, Newbold C J. Contribution of rumen protozoa to duodenal flow of nitrogen, conjugated linoleic acid and vaccenic acid in steers fed silages differing in their water-soluble carbohydrate content. British Journal of Nutrition 2006, 96:861-869.
    • (2006) British Journal of Nutrition , vol.96 , pp. 861-869
    • Yáñez-Ruiz, D.R.1    Scollan, N.D.2    Merry, R.J.3    Newbold, C.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.