-
1
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
10.1038/nature05874. 17571346
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. E Birney,, et al. Nature 2007 447 7146 799 816 10.1038/nature05874 17571346
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
Birney, E.1
-
2
-
-
33846169089
-
Eukaryotic regulatory RNAs: An answer to the 'genome complexity' conundrum
-
10.1101/gad.1484207. 17210785
-
Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum. KV Prasanth DL Spector, Genes Dev 2007 21 1 11 42 10.1101/gad.1484207 17210785
-
(2007)
Genes Dev
, vol.21
, Issue.1
, pp. 11-42
-
-
Prasanth, K.V.1
Spector, D.L.2
-
3
-
-
33646782348
-
Non-coding RNA
-
10.1093/hmg/ddl046. 16651366
-
Non-coding RNA. JS Mattick IV Makunin, Hum Mol Genet 2006 15 Spec No 1 17 29 10.1093/hmg/ddl046 16651366
-
(2006)
Hum Mol Genet
, vol.15
, Issue.SPEC. NO 1
, pp. 1817-29
-
-
Mattick, J.S.1
Makunin, I.V.2
-
4
-
-
0036948659
-
Xist RNA and the mechanism of X chromosome inactivation
-
10.1146/annurev.genet.36.042902.092433. 12429693
-
Xist RNA and the mechanism of X chromosome inactivation. K Plath S Mlynarczyk-Evans DA Nusinow B Panning, Annu Rev Genet 2002 36 233 78 10.1146/annurev.genet.36.042902.092433 12429693
-
(2002)
Annu Rev Genet
, vol.36
, pp. 233-78
-
-
Plath, K.1
Mlynarczyk-Evans, S.2
Nusinow, D.A.3
Panning, B.4
-
5
-
-
33747603960
-
The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export
-
10.1038/sj.emboj.7601245. 16874305
-
The imprinted Air ncRNA is an atypical RNAPII transcript that evades splicing and escapes nuclear export. CI Seidl SH Stricker DP Barlow, EMBO J 2006 25 15 3565 75 10.1038/sj.emboj.7601245 16874305
-
(2006)
EMBO J
, vol.25
, Issue.15
, pp. 3565-75
-
-
Seidl, C.I.1
Stricker, S.H.2
Barlow, D.P.3
-
6
-
-
0032509990
-
Location of enhancers is essential for the imprinting of H19 and Igf2 genes
-
10.1038/35655. 9490417
-
Location of enhancers is essential for the imprinting of H19 and Igf2 genes. AL Webber RS Ingram JM Levorse SM Tilghman, Nature 1998 391 6668 711 5 10.1038/35655 9490417
-
(1998)
Nature
, vol.391
, Issue.6668
, pp. 711-5
-
-
Webber, A.L.1
Ingram, R.S.2
Levorse, J.M.3
Tilghman, S.M.4
-
7
-
-
0037075032
-
The non-coding Air RNA is required for silencing autosomal imprinted genes
-
11845212
-
The non-coding Air RNA is required for silencing autosomal imprinted genes. F Sleutels R Zwart DP Barlow, Nature 2002 415 6873 810 3 11845212
-
(2002)
Nature
, vol.415
, Issue.6873
, pp. 810-3
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
8
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
10.1016/j.cell.2007.05.022. 17604720
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. JL Rinn M Kertesz JK Wang SL Squazzo X Xu SA Brugmann LH Goodnough JA Helms PJ Farnham E Segal HY Chang, Cell 2007 129 7 1311 23 10.1016/j.cell.2007.05.022 17604720
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-23
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
9
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
10.1016/S0092-8674(00)80711-4. 10199399
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. RB Lanz NJ McKenna SA Onate U Albrecht J Wong SY Tsai MJ Tsai BW O'Malley, Cell 1999 97 1 17 27 10.1016/S0092-8674(00)80711-4 10199399
-
(1999)
Cell
, vol.97
, Issue.1
, pp. 17-27
-
-
Lanz, R.B.1
McKenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.J.7
O'Malley, B.W.8
-
10
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
10.1038/nature06992. 18509338
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. X Wang S Arai X Song D Reichart K Du G Pascual P Tempst MG Rosenfeld CK Glass R Kurokawa, Nature 2008 454 7200 126 30 10.1038/nature06992 18509338
-
(2008)
Nature
, vol.454
, Issue.7200
, pp. 126-30
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
Pascual, G.6
Tempst, P.7
Rosenfeld, M.G.8
Glass, C.K.9
Kurokawa, R.10
-
11
-
-
0036894753
-
Dendritic BC1 RNA: Functional role in regulation of translation initiation
-
12451124
-
Dendritic BC1 RNA: functional role in regulation of translation initiation. H Wang A Iacoangeli S Popps IA Muslimov H Imataka N Sonenberg IB Lomakin H Tiedge, J Neurosci 2002 22 23 10232 41 12451124
-
(2002)
J Neurosci
, vol.22
, Issue.23
, pp. 10232-41
-
-
Wang, H.1
Iacoangeli, A.2
Popps, S.3
Muslimov, I.A.4
Imataka, H.5
Sonenberg, N.6
Lomakin, I.B.7
Tiedge, H.8
-
12
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
10.1126/science.1115901. 16141075
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. AT Willingham AP Orth S Batalov EC Peters BG Wen P Aza-Blanc JB Hogenesch PG Schultz, Science 2005 309 5740 1570 3 10.1126/science.1115901 16141075
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1570-3
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
Hogenesch, J.B.7
Schultz, P.G.8
-
14
-
-
68149182666
-
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry
-
10.1038/nn.2371. 19620975
-
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry. AM Bond MJW VanGompel EA Sametsky MF Clark JC Savage JF Disterhoft JD Kohtz, Nat Neurosci 2009 12 8 1020 7 10.1038/nn.2371 19620975
-
(2009)
Nat Neurosci
, vol.12
, Issue.8
, pp. 1020-7
-
-
Bond, A.M.1
Vangompel, M.J.W.2
Sametsky, E.A.3
Clark, M.F.4
Savage, J.C.5
Disterhoft, J.F.6
Kohtz, J.D.7
-
15
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
10.1101/gad.1416106. 16705037
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. J Feng C Bi BS Clark R Mady P Shah JD Kohtz, Genes Dev 2006 20 11 1470 84 10.1101/gad.1416106 16705037
-
(2006)
Genes Dev
, vol.20
, Issue.11
, pp. 1470-84
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
16
-
-
15744387853
-
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina
-
10.1016/j.cub.2005.02.027. 15797018
-
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. TL Young T Matsuda CL Cepko, Curr Biol 2005 15 6 501 12 10.1016/j.cub.2005.02.027 15797018
-
(2005)
Curr Biol
, vol.15
, Issue.6
, pp. 501-12
-
-
Young, T.L.1
Matsuda, T.2
Cepko, C.L.3
-
17
-
-
70349093091
-
New meaning in the message: Noncoding RNAs and their role in retinal development
-
19191220
-
New meaning in the message: Noncoding RNAs and their role in retinal development. NA Rapicavoli S Blackshaw, Dev Dyn 2009 19191220
-
(2009)
Dev Dyn
-
-
Rapicavoli, N.A.1
Blackshaw, S.2
-
18
-
-
19344368188
-
Genomic analysis of mouse retinal development
-
10.1371/journal.pbio.0020247. 15226823
-
Genomic analysis of mouse retinal development. S Blackshaw S Harpavat J Trimarchi L Cai H Huang WP Kuo G Weber K Lee RE Fraioli SH Cho R Yung E Asch L Ohno-Machado WH Wong CL Cepko, PLoS Biol 2004 2 9 247 10.1371/journal.pbio. 0020247 15226823
-
(2004)
PLoS Biol
, vol.2
, Issue.9
, pp. 5247
-
-
Blackshaw, S.1
Harpavat, S.2
Trimarchi, J.3
Cai, L.4
Huang, H.5
Kuo, W.P.6
Weber, G.7
Lee, K.8
Fraioli, R.E.9
Cho, S.H.10
Yung, R.11
Asch, E.12
Ohno-Machado, L.13
Wong, W.H.14
Cepko, C.L.15
-
19
-
-
34548291568
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
10.1242/jcs.009357. 17623775
-
The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. M Sone T Hayashi H Tarui K Agata M Takeichi S Nakagawa, J Cell Sci 2007 120 2498 506 10.1242/jcs.009357 17623775
-
(2007)
J Cell Sci
, vol.120
, pp. 2498-506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
Agata, K.4
Takeichi, M.5
Nakagawa, S.6
-
20
-
-
33751277900
-
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction
-
10.1007/s10038-006-0070-9. 17066261
-
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. N Ishii K Ozaki H Sato H Mizuno S Saito A Takahashi Y Miyamoto S Ikegawa N Kamatani M Hori S Saito Y Nakamura T Tanaka, J Hum Genet 2006 51 12 1087 99 10.1007/s10038-006-0070-9 17066261
-
(2006)
J Hum Genet
, vol.51
, Issue.12
, pp. 1087-99
-
-
Ishii, N.1
Ozaki, K.2
Sato, H.3
Mizuno, H.4
Saito, S.5
Takahashi, A.6
Miyamoto, Y.7
Ikegawa, S.8
Kamatani, N.9
Hori, M.10
Saito, S.11
Nakamura, Y.12
Tanaka, T.13
-
21
-
-
4344672685
-
Specificity of the STAR/GSG domain protein Qk1: Implications for the regulation of myelination
-
10.1261/rna.7780504. 15273320
-
Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination. SP Ryder JR Williamson, RNA 2004 10 9 1449 58 10.1261/rna.7780504 15273320
-
(2004)
RNA
, vol.10
, Issue.9
, pp. 1449-58
-
-
Ryder, S.P.1
Williamson, J.R.2
-
22
-
-
26944489263
-
Target RNA motif and target mRNAs of the Quaking STAR protein
-
10.1038/nsmb963. 16041388
-
Target RNA motif and target mRNAs of the Quaking STAR protein. A Galarneau S Richard, Nat Struct Mol Biol 2005 12 8 691 8 10.1038/nsmb963 16041388
-
(2005)
Nat Struct Mol Biol
, vol.12
, Issue.8
, pp. 691-8
-
-
Galarneau, A.1
Richard, S.2
-
23
-
-
0346458703
-
Dominant-negative C/EBP disrupts mitotic clonal expansion and differentiation of 3T3-L1 preadipocytes
-
10.1073/pnas.0307229101. 14688407
-
Dominant-negative C/EBP disrupts mitotic clonal expansion and differentiation of 3T3-L1 preadipocytes. JW Zhang Q Tang C Vinson MD Lane, Proc Natl Acad Sci USA 2004 101 1 43 7 10.1073/pnas.0307229101 14688407
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.1
, pp. 43-7
-
-
Zhang, J.W.1
Tang, Q.2
Vinson, C.3
Lane, M.D.4
-
24
-
-
17644391078
-
MPER1-mediated nuclear export of mCRY1/2 is an important element in establishing circadian rhythm
-
10.1038/sj.embor.7400372. 15791269
-
mPER1-mediated nuclear export of mCRY1/2 is an important element in establishing circadian rhythm. S Loop M Katzer T Pieler, EMBO Rep 2005 6 4 341 7 10.1038/sj.embor.7400372 15791269
-
(2005)
EMBO Rep
, vol.6
, Issue.4
, pp. 341-7
-
-
Loop, S.1
Katzer, M.2
Pieler, T.3
-
25
-
-
47549103094
-
Cell-specific nuclear import of plasmid DNA in smooth muscle requires tissue-specific transcription factors and DNA sequences
-
10.1038/gt.2008.83. 18496575
-
Cell-specific nuclear import of plasmid DNA in smooth muscle requires tissue-specific transcription factors and DNA sequences. AM Miller DA Dean, Gene Ther 2008 15 15 1107 15 10.1038/gt.2008.83 18496575
-
(2008)
Gene Ther
, vol.15
, Issue.15
, pp. 1107-15
-
-
Miller, A.M.1
Dean, D.A.2
-
26
-
-
35748967283
-
PER2 controls circadian periods through nuclear localization in the suprachiasmatic nucleus
-
10.1111/j.1365-2443.2007.01129.x. 17986006
-
PER2 controls circadian periods through nuclear localization in the suprachiasmatic nucleus. K Miyazaki M Wakabayashi S Chikahisa H Sei N Ishida, Genes Cells 2007 12 11 1225 34 10.1111/j.1365-2443.2007.01129.x 17986006
-
(2007)
Genes Cells
, vol.12
, Issue.11
, pp. 1225-34
-
-
Miyazaki, K.1
Wakabayashi, M.2
Chikahisa, S.3
Sei, H.4
Ishida, N.5
-
27
-
-
0035734382
-
Nrl is required for rod photoreceptor development
-
10.1038/ng774. 11694879
-
Nrl is required for rod photoreceptor development. AJ Mears M Kondo PK Swain Y Takada RA Bush TL Saunders PA Sieving A Swaroop, Nat Genet 2001 29 4 447 52 10.1038/ng774 11694879
-
(2001)
Nat Genet
, vol.29
, Issue.4
, pp. 447-52
-
-
Mears, A.J.1
Kondo, M.2
Swain, P.K.3
Takada, Y.4
Bush, R.A.5
Saunders, T.L.6
Sieving, P.A.7
Swaroop, A.8
-
28
-
-
0344442834
-
Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development
-
10.1038/nn1155. 14625556
-
Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development. A Nishida A Furukawa C Koike Y Tano S Aizawa I Matsuo T Furukawa, Nat Neurosci 2003 6 12 1255 63 10.1038/nn1155 14625556
-
(2003)
Nat Neurosci
, vol.6
, Issue.12
, pp. 1255-63
-
-
Nishida, A.1
Furukawa, A.2
Koike, C.3
Tano, Y.4
Aizawa, S.5
Matsuo, I.6
Furukawa, T.7
-
29
-
-
41549112585
-
A comprehensive negative regulatory program controlled by Brn3b to ensure ganglion cell specification from multipotential retinal precursors
-
10.1523/JNEUROSCI.0043-08.2008. 18367606
-
A comprehensive negative regulatory program controlled by Brn3b to ensure ganglion cell specification from multipotential retinal precursors. F Qiu H Jiang M Xiang, J Neurosci 2008 28 13 3392 403 10.1523/JNEUROSCI.0043-08.2008 18367606
-
(2008)
J Neurosci
, vol.28
, Issue.13
, pp. 3392-403
-
-
Qiu, F.1
Jiang, H.2
Xiang, M.3
-
30
-
-
0035815295
-
Pax6 is required for the multipotent state of retinal progenitor cells
-
10.1016/S0092-8674(01)00295-1. 11301001
-
Pax6 is required for the multipotent state of retinal progenitor cells. T Marquardt R Ashery-Padan N Andrejewski R Scardigli F Guillemot P Gruss, Cell 2001 105 1 43 55 10.1016/S0092-8674(01)00295-1 11301001
-
(2001)
Cell
, vol.105
, Issue.1
, pp. 43-55
-
-
Marquardt, T.1
Ashery-Padan, R.2
Andrejewski, N.3
Scardigli, R.4
Guillemot, F.5
Gruss, P.6
-
31
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
10.1126/science.1138341. 17510325
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription. P Kapranov J Cheng D Sijit DA Nix R Duttagupta AT Willingham PF Stadler J Hertel J Hackermueller IL Hofacker I Bell E Cheung J Drenkow E Dumais S Patel G Helt M Ganesh S Ghosh A Piccolboni V Sementchenko H Tammana TR Gingeras, Science 2007 316 5830 1484 8 10.1126/science.1138341 17510325
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1484-8
-
-
Kapranov, P.1
Cheng, J.2
Sijit, D.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermueller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
32
-
-
15544363403
-
Specific and potent RNAi in the nucleus of human cells
-
10.1038/nsmb886. 15643423
-
Specific and potent RNAi in the nucleus of human cells. GB Robb KM Brown J Khurana TM Rana, Nat Struct Mol Biol 2005 12 2 133 7 10.1038/nsmb886 15643423
-
(2005)
Nat Struct Mol Biol
, vol.12
, Issue.2
, pp. 133-7
-
-
Robb, G.B.1
Brown, K.M.2
Khurana, J.3
Rana, T.M.4
-
33
-
-
67651002028
-
Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells
-
10.1261/rna.1657609. 19535462
-
Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells. T Ideue K Hino S Kitao T Yokoi T Hirose, RNA 2009 15 8 1578 87 10.1261/rna.1657609 19535462
-
(2009)
RNA
, vol.15
, Issue.8
, pp. 1578-87
-
-
Ideue, T.1
Hino, K.2
Kitao, S.3
Yokoi, T.4
Hirose, T.5
-
34
-
-
34347406994
-
Expression of the LIM-homeodomain protein Isl1 in the developing and mature mouse retina
-
10.1002/cne.21390. 17480014
-
Expression of the LIM-homeodomain protein Isl1 in the developing and mature mouse retina. Y Elshatory M Deng X Xie L Gan, J Comp Neurol 2007 503 1 182 97 10.1002/cne.21390 17480014
-
(2007)
J Comp Neurol
, vol.503
, Issue.1
, pp. 182-97
-
-
Elshatory, Y.1
Deng, M.2
Xie, X.3
Gan, L.4
-
35
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
10.1101/gr.3715005. 16024819
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. A Siepel G Bejerano JS Pedersen AS Hinrichs M Hou K Rosenbloom H Clawson J Spieth LW Hiller S Richards GM Weinstock RK Wilson RA Gibbs JW Kent W Miller D Haussler, Genome Res 2005 15 8 1034 50 10.1101/gr.3715005 16024819
-
(2005)
Genome Res
, vol.15
, Issue.8
, pp. 1034-50
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hiller, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
Gibbs, R.A.13
Kent, J.W.14
Miller, W.15
Haussler, D.16
-
36
-
-
58549108816
-
Pias3-dependent SUMOylation directs rod photoreceptor development
-
10.1016/j.neuron.2008.12.006. 19186166
-
Pias3-dependent SUMOylation directs rod photoreceptor development. A Onishi G Peng C Hsu U Alexis S Chen S Blackshaw, Neuron 2009 61 2 234 46 10.1016/j.neuron.2008.12.006 19186166
-
(2009)
Neuron
, vol.61
, Issue.2
, pp. 234-46
-
-
Onishi, A.1
Peng, G.2
Hsu, C.3
Alexis, U.4
Chen, S.5
Blackshaw, S.6
-
37
-
-
0347089037
-
Electroporation and RNA interference in the rodent retina in vivo and in vitro
-
10.1073/pnas.2235688100. 14603031
-
Electroporation and RNA interference in the rodent retina in vivo and in vitro. T Matsuda CL Cepko, Proc Natl Acad Sci USA 2004 101 1 16 22 10.1073/pnas.2235688100 14603031
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.1
, pp. 16-22
-
-
Matsuda, T.1
Cepko, C.L.2
|