Electrochemical DNA biosensor for the detection of specific gene related to Trichoderma harzianum species

Bioelectrochemistry

Volumn 79, Issue 1, 2010, Pages 31-36

  Siddiquee, Shafiquzzaman ^a   Yusof, Nor Azah ^a   Salleh, Abu Bakar ^a   Bakar, Fatimah Abu ^a   Heng, Lee Yook ^b  

^a UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^b UNIVERSITI KEBANGSAAN MALAYSIA   (Malaysia)

Author keywords

DNA; Electrochemical labeled probe; Hybridization; Trichoderma harzianum

Indexed keywords

BINDING REACTIONS; CONCENTRATION OF; CONTROL EXPERIMENTS; DNA BIOSENSORS; DNA PROBE; ELECTROACTIVE; ELECTROCHEMICAL BIOSENSOR; ELECTROCHEMICAL DNA BIOSENSORS; GENE SEQUENCES; GOLD ELECTRODES; HYBRIDIZATION; METHYLENE BLUE; PEAK CURRENTS; PROBE HYBRIDIZATION; REDOX CURRENT; SPECIFIC ADSORPTION; TARGET GENES; TRICHODERMA HARZIANUM; VOLTAMMETRIC DETECTION;

ADSORPTION; AMPLIFICATION; BIOSENSORS; DNA; NUCLEIC ACIDS; OLIGONUCLEOTIDES; PROBES; TARGETS;

GENES;

3 MERCAPTOPROPIONIC ACID; FUNGAL DNA; METHYLENE BLUE; OLIGONUCLEOTIDE; SELF ASSEMBLED MONOLAYER; SINGLE STRANDED DNA; THIOL;

ARTICLE; BINDING AFFINITY; BIOSENSOR; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DNA BINDING; DNA HYBRIDIZATION; DNA PROBE; ELECTROCHEMICAL DETECTION; ELECTRODE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENE SEQUENCE; GENE TARGETING; HIGH TEMPERATURE PROCEDURES; HYPOCREA LIXII; NONHUMAN; NUCLEIC ACID AMPLIFICATION; NUCLEIC ACID IMMOBILIZATION; OXIDATION REDUCTION STATE; PROCESS DEVELOPMENT; SENSITIVITY AND SPECIFICITY;

3-MERCAPTOPROPIONIC ACID; BASE SEQUENCE; BIOSENSING TECHNIQUES; DNA PROBES; DNA, FUNGAL; ELECTROCHEMISTRY; ELECTRODES; GENES, FUNGAL; GOLD; NUCLEIC ACID HYBRIDIZATION; SURFACE PROPERTIES; TEMPERATURE; TIME FACTORS; TRICHODERMA;

HYPOCREA LIXII;

EID: 77951880359     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioelechem.2009.10.004     Document Type: Article

References (44)

1. Van Belkum A. Molecular diagnostics in medical microbiology: yesterday, today and tomorrow. Curr. Opin. Pharmacol. 3 (2003) 1-5
2. Huang F.C., Liao C.S., and Lee G.B. An integrated microfluidic chip for DNA/RNA amplification, electrophoresis separation and on-line optical detection. Electrophoresis 27 (2006) 3297-3305
3. Heid C.A., Stevens J., Livak K.J., and Williams P.M. Real time quantitative PCR. Genome Res. 6 (1996) 986-994
4. Peccoud J., and Jacob C. Theoretical uncertainty of measurements using quantitative polymerase chain reaction. Biophys. J. 71 (1996) 101-108
5. Wilke W.W., Sutton L.D., and Jones R.N. Automation of polymerase chain reaction tests to achieve acceptable contamination rates. Clin. Chem. 41 (1995) 622-623
6. Horng J.T., Wub L.C., Liu B.J., Kuo J.L., Kuo W.H., and Zhang J.J. An expert system to classify microarray gene expression data using gene selection by decision tree. Expert Systems with Applications 36 (2009) 9072-9081
7. Furlong E.E.M., Anderson E.C., Null B., White K.P., and Scott M.P. Patterns of gene expression during Drosophila mesoderm development. Science 293 (2001) 1629-1633
8. Lipshutz R.J., Fodor S.P.A., Gingeras T.R., and Lockhart D.J. High density synthetic oligonucleotide arrays. Nat. Genet. 21 (1999) 20-24
9. Jobs M., Fredriksson S., Brookes A.J., and Landegren U. Effect of oligonucleotide truncation on single-nucleotide distinction by solid-phase hybridization. Anal. Chem. 74 (2002) 199-202
10. Peterson A.W., Heaton R.J., and Georgiadis R. Kinetic control of hybridization in surface immobilized DNA monolayer films. J. Am. Chem. Soc. 122 (2000) 7837-7838
11. Cattrall R.W. Chemical sensors; chemistry primers (1997), Oxford University Press, Oxford, UK
12. Mikkelsen S.K. Electrochemical biosensors for DNA sequence detection. Electroanalysis 8 (1996) 15-19
13. Yang M., McGovern M.E., and Thompson M. Genosensor technology and the detection of interfacial nucleic acid chemistry. Anal. Chim. Acta. 346 (1997) 259-275
14. Lucarelli F., Marrazza G., Turner A.P.F., and Mascini M. Carbon and gold electrodes as electrochemical transducers for DNA hybridisation sensors. Biosens. Bioelectrons 19 (2004) 515-530
15. Herne T.M., and Tarlov M.J. Characterization of DNA probes immobilized on gold surfaces. J. Am. Chem. Soc. 119 (1997) 8916-8920
16. Kühnle A. Self-assembly of organic molecules at metal surfaces. Current Opinion in Colloid & Interface Science 14 (2009) 157-168
17. Chiorcea Paquim A.M., Diculescu V.C., Oretskaya T.S., and Oliveira Brett A.M. AFM and electroanalytical studies of synthetic oligonucleotide hybridization. Biosens. Bioelectron. 20 (2004) 933-944
18. Kerman K., Ozhan D., Kara P., Meric B., Gooding J.J., and Ozsoz M. Voltammetric determination of DNA hybridisation using methylene blue and self-assembled alkanethiol monolayer on gold electrode. Anal. Chim. Acta 462 (2002) 39-47
19. Palecek E. Past, present and future of nucleic acids electrochemistry. Talanta 56 (2002) 809-819
20. Boon E.M., Ceres D.M., Drummond T.G., Hill M.G., and Barton J.K. Mutation detection by electrocatalysis at DNA-modified electrodes. Nat. Biotechnol. 18 (2000) 1096-1100
21. Wang J., Palecek E., Nielsen P.E., Rivas G., Cai X., Shiraishi H., Doutha N., Luo D.B., and Farias P.A.M. Peptide nucleic acid probes for sequence-specific DNA biosensors. J. Am. Chem. Soc. 118 (1996) 7667-7670
22. Hashimoto K., Ito K., and Ishimori Y. Sequence-specific gene detection with a gold electrode modified with DNA probes and an electrochemically active dye. Anal. Chem. 66 (1994) 3830-3833
23. Millan K.M., Saraullo A., and Mikkelsen S.R. Voltammetric DNA biosensor for cystic fibrosis based on a modified carbon paste electrode. Anal. Chem. 66 (1994) 2943-2948
24. Erdem A., Kerman K., Meric D., Akarca U.S., and Ozsoz M. DNA electrochemical biosensor for the detection of short DNA sequences related to the hepatitis B virus. Electroanalysis 11 8 (1999) 586-588
25. Erdem A., and Ozsoz M. Interaction of the anticancer drug epirubicin with DNA. Anal. Chim. Acta 437 (2001) 107-114
26. Yan F., Erdem A., Meric B., Kerman K., Ozsoz M., and Sadik O.A. Electrochemical DNA biosensor for the detection of specific gene related to Microcystis species. Electrochem. Commun. 3 (2001) 224-228
27. Erdem A., Kerman K., Meric B., Akarca U.S., and Ozsoz M. Novel hybridisation indicator methylene blue for the electrochemical detection of short DNA sequences related to the hepatitis B virus. Anal. Chim. Acta 422 (2000) 139-149
28. Rohs R., and Sklenar H. Methylene blue binding to DNA with alternating AT base sequence: minor groove binding is favored by intercalation. J. Biomol. Struct. Dyn. 21 5 (2004) 699-711
29. Kelley O.S., and Barton K.J. Electrochemistry of methylene blue bound to a DNA-modified electrode. Bioconj. Chem. 8 (1997) 31-37
30. Kelley O.S., Boon E.M., Barton K.J., Jakson N.M., and Hill M.G. Single-base mismatch detection based on charge transduction through DNA. Nucleic Acids Res. 27 24 (1999) 4830-4837
31. Kelley O.S., Jakson N.M., Hill M.G., and Barton K.J. Long-range electron transfer through DNA films. Angewandte Chemie 38 7 (1999) 941-945
32. Tani A., Thomson A.J., and Butt J.N. Methylene blue as an electrochemical discriminator of single or double-stranded oligonucleotides immobilised on gold substrates. Analyst 126 (2001) 1756-1759
33. Yang W., Ozsoz M., Hibbert D.B., and Gooding J.J. Evidence for the direct interaction between methylene blue and guanine bases using DNA-modified carbon paste electrodes. Electroanalysis 14 18 (2002) 1299-1302
34. Rohs R., Sklenar H., Lavery R., and Röder B. Methylene blue binding to DNA with alternating GC base sequence: a modeling study. J. Am. Chem. Soc. 122 (2000) 2860
35. Enescu M., Levy, and Gheorge V. Molecular dynamics simulation of methylene blue-guanine complex in water. J. Physic. Chem. B 104 (2000) 1073
36. Katz E., and Solov'ev A.A. Chemical modification of platinum and gold electrodes by naphthoquinones using amines containing sulfhydryl or disulphide groups. J. Electroanal. Chem. 291 (1990) 171-186
37. Mannelli I., Minunni M., Tombelli S., and Mascini M. Quartz crystal microbalance (QCM) affinity biosensor for genetically modified organisms (GMOs) detection. Biosens. Bioelectrons 18 (2003) 129-140
38. Raeder U., and Broda P. Rapid preparation of DNA from filamentous fungi. Lett. Appl. Microbiol. 1 (1985) 17-20
39. Loaiza O.A., Campuzano S., Pedrero M., and Pingarron J.M. DNA sensor based on an Escherichia coli lac Z gene probe immobilization at self-assembled monolayers-modified gold electrodes. Talanta 73 (2007) 838-844
40. Gu J., Lu X., and Ju H. DNA sensor for recognition of native yeast DNA sequence with methylene blue as an electrochemical hybridization indicator. Electroanalysis 14 (2002) 949-954
41. Bang G.S., Cho S., and Kim B.G. A novel electrochemical detection method for aptamer biosensors. Biosens. Bioelectron. 21 6 (2005) 863-870
42. Bissett J. A revision of the genus Trichoderma. III. Sect. Pachybasium. Can. J. Bot. 69 (1991) 2373-2417
43. Chaverri P., and Samuels G.J. Hypocrea lixii, the teleomorph of Trichoderma harzianum. Mycol. Progr. 1 (2002) 283-286
44. Samuels G.J., Dodd S.L., Game W., Castlebury L.A., and Petrini O. Trichoderma species associated with the green mold epidemic of commercially grown Agaricus bisporus. Mycologia 94 (2002) 146-170